Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.95■□□□□ 0.46
LSM1O15116 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 AF186192.3-201ENST00000583427 947 ntBASIC17.95■□□□□ 0.46
LSM1O15116 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.95■□□□□ 0.46
LSM1O15116 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LSM1O15116 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LSM1O15116 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LSM1O15116 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.95■□□□□ 0.46
LSM1O15116 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LSM1O15116 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LSM1O15116 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
LSM1O15116 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.94■□□□□ 0.46
LSM1O15116 RPPH1-201ENST00000516869 333 ntBASIC17.94■□□□□ 0.46
LSM1O15116 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 MIR4651-201ENST00000582622 73 ntBASIC17.94■□□□□ 0.46
LSM1O15116 AC130371.2-201ENST00000619443 611 ntBASIC17.94■□□□□ 0.46
LSM1O15116 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.94■□□□□ 0.46
LSM1O15116 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LSM1O15116 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
LSM1O15116 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LSM1O15116 AIRN-201ENST00000601203 4374 ntBASIC17.93■□□□□ 0.46
LSM1O15116 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.93■□□□□ 0.46
LSM1O15116 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.93■□□□□ 0.46
LSM1O15116 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
LSM1O15116 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LSM1O15116 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 AC011506.1-201ENST00000474329 610 ntBASIC17.93■□□□□ 0.46
LSM1O15116 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.93■□□□□ 0.46
LSM1O15116 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.93■□□□□ 0.46
LSM1O15116 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LSM1O15116 RARRES2P10-201ENST00000564312 460 ntBASIC17.93■□□□□ 0.46
LSM1O15116 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.93■□□□□ 0.46
LSM1O15116 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LSM1O15116 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.93■□□□□ 0.46
LSM1O15116 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.93■□□□□ 0.46
LSM1O15116 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LSM1O15116 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
LSM1O15116 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.93■□□□□ 0.46
LSM1O15116 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 AL356309.3-201ENST00000624132 1934 ntBASIC17.92■□□□□ 0.46
LSM1O15116 AC135776.1-201ENST00000319817 2481 ntBASIC17.92■□□□□ 0.46
LSM1O15116 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 FAM207BP-201ENST00000447172 505 ntBASIC17.92■□□□□ 0.46
LSM1O15116 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
LSM1O15116 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 CD99P1-205ENST00000527459 561 ntBASIC17.92■□□□□ 0.46
LSM1O15116 AC073195.1-201ENST00000607241 877 ntBASIC17.92■□□□□ 0.46
LSM1O15116 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.92■□□□□ 0.46
LSM1O15116 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LSM1O15116 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms