RNA–Protein interactions for RNA: ENST00000264828.3

COL5A3-201, Transcript of collagen type V alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL5A3, Length 6,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3-201ENST00000264828 DCAF8L2P0C7V8 631 aa30.73■■■□□ 2.51
COL5A3-201ENST00000264828 NISCHQ9Y2I1 1504 aa29.61■■■□□ 2.33
COL5A3-201ENST00000264828 SUPT5HO00267 1087 aaKnown RBP29.38■■■□□ 2.29
COL5A3-201ENST00000264828 EHMT2Q96KQ7 1210 aa28.98■■■□□ 2.23
COL5A3-201ENST00000264828 PELP1Q8IZL8 1130 aaKnown RBP28.75■■■□□ 2.19
COL5A3-201ENST00000264828 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
COL5A3-201ENST00000264828 APLP2Q06481 763 aa28.08■■■□□ 2.09
COL5A3-201ENST00000264828 TTBK1Q5TCY1 1321 aaPredicted RBP28.05■■■□□ 2.08
COL5A3-201ENST00000264828 FAM9AQ8IZU1 332 aaPredicted RBP27.88■■■□□ 2.05
COL5A3-201ENST00000264828 PCGF6Q9BYE7 350 aa27.87■■■□□ 2.05
COL5A3-201ENST00000264828 ERICH6Q7L0X2 663 aa27.84■■■□□ 2.05
COL5A3-201ENST00000264828 CENPBP07199 599 aaPredicted RBP27.6■■■□□ 2.01
COL5A3-201ENST00000264828 RANGAP1P46060 587 aaPredicted RBP27.51■■□□□ 1.99
COL5A3-201ENST00000264828 CCER1Q8TC90 406 aaPredicted RBP27.46■■□□□ 1.99
COL5A3-201ENST00000264828 YTHDC1Q96MU7 727 aaKnown RBP27.27■■□□□ 1.96
COL5A3-201ENST00000264828 ZEB1P37275 1124 aaPredicted RBP27.25■■□□□ 1.95
COL5A3-201ENST00000264828 ATP1B4Q9UN42 357 aaPredicted RBP27.2■■□□□ 1.94
COL5A3-201ENST00000264828 NEFLP07196 543 aa27.07■■□□□ 1.92
COL5A3-201ENST00000264828 TRIM41Q8WV44 630 aa27.02■■□□□ 1.92
COL5A3-201ENST00000264828 UBTFP17480 764 aaKnown RBP26.85■■□□□ 1.89
COL5A3-201ENST00000264828 MYT1Q01538 1121 aa26.85■■□□□ 1.89
COL5A3-201ENST00000264828 PPARGC1BQ86YN6 1023 aaKnown RBP26.82■■□□□ 1.88
COL5A3-201ENST00000264828 DAXXQ9UER7 740 aaPredicted RBP26.45■■□□□ 1.83
COL5A3-201ENST00000264828 POLR3GLQ9BT43 218 aa26.4■■□□□ 1.82
COL5A3-201ENST00000264828 TRIM26Q12899 539 aaPredicted RBP26.35■■□□□ 1.81
COL5A3-201ENST00000264828 ITGAEP38570 1179 aa26.32■■□□□ 1.8
COL5A3-201ENST00000264828 HRCP23327 699 aa26.31■■□□□ 1.8
COL5A3-201ENST00000264828 CNGB1Q14028 1251 aaPredicted RBP26.28■■□□□ 1.8
COL5A3-201ENST00000264828 MYT1LQ9UL68 1186 aa26.09■■□□□ 1.77
COL5A3-201ENST00000264828 HNRNPUL2Q1KMD3 747 aaKnown RBP26.06■■□□□ 1.76
COL5A3-201ENST00000264828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.02■■□□□ 1.76
COL5A3-201ENST00000264828 LOC105371045A0A1W2PR82 267 aa26■■□□□ 1.75
COL5A3-201ENST00000264828 RTL5Q5HYW3 569 aaPredicted RBP25.88■■□□□ 1.73
COL5A3-201ENST00000264828 ZNF316A6NFI3 1004 aaPredicted RBP25.87■■□□□ 1.73
COL5A3-201ENST00000264828 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
COL5A3-201ENST00000264828 SLC4A1APQ9BWU0 796 aaKnown RBP25.84■■□□□ 1.73
COL5A3-201ENST00000264828 CLSPNQ9HAW4 1339 aa25.8■■□□□ 1.72
COL5A3-201ENST00000264828 DIEXFQ68CQ4 756 aaKnown RBP25.76■■□□□ 1.71
COL5A3-201ENST00000264828 ABCC9O60706 1549 aa25.73■■□□□ 1.71
COL5A3-201ENST00000264828 BCANQ96GW7 911 aa25.66■■□□□ 1.7
COL5A3-201ENST00000264828 PABPN1Q86U42 306 aaKnown RBP eCLIP25.56■■□□□ 1.68
COL5A3-201ENST00000264828 GTF3C3Q9Y5Q9 886 aa25.46■■□□□ 1.67
COL5A3-201ENST00000264828 FAM50AQ14320 339 aaKnown RBP25.46■■□□□ 1.67
COL5A3-201ENST00000264828 NEUROD1Q13562 356 aa25.43■■□□□ 1.66
COL5A3-201ENST00000264828 TRIM52Q96A61 297 aa25.38■■□□□ 1.65
COL5A3-201ENST00000264828 CDK11AQ9UQ88 783 aaPredicted RBP25.29■■□□□ 1.64
COL5A3-201ENST00000264828 BCL11AQ9H165 835 aa25.24■■□□□ 1.63
COL5A3-201ENST00000264828 ZNF326Q5BKZ1 582 aaKnown RBP25.23■■□□□ 1.63
COL5A3-201ENST00000264828 ANP32CO43423 234 aa25.21■■□□□ 1.63
COL5A3-201ENST00000264828 ZBTB47Q9UFB7 747 aaPredicted RBP25.12■■□□□ 1.61
COL5A3-201ENST00000264828 CANXP27824 592 aaKnown RBP25.06■■□□□ 1.6
COL5A3-201ENST00000264828 SLC24A1O60721 1099 aa25.02■■□□□ 1.6
COL5A3-201ENST00000264828 NPM2Q86SE8 214 aaKnown RBP24.96■■□□□ 1.59
COL5A3-201ENST00000264828 FBLN2P98095 1184 aa24.92■■□□□ 1.58
COL5A3-201ENST00000264828 ANP32AP39687 249 aaKnown RBP24.9■■□□□ 1.58
COL5A3-201ENST00000264828 ACIN1Q9UKV3 1341 aaKnown RBP24.9■■□□□ 1.58
COL5A3-201ENST00000264828 SCRIBQ14160 1630 aa24.88■■□□□ 1.57
COL5A3-201ENST00000264828 EIF5BO60841 1220 aaKnown RBP24.8■■□□□ 1.56
COL5A3-201ENST00000264828 ARID3CA6NKF2 412 aa24.71■■□□□ 1.55
COL5A3-201ENST00000264828 NEFMP07197 916 aa24.69■■□□□ 1.54
COL5A3-201ENST00000264828 FKBP8Q14318 412 aa24.69■■□□□ 1.54
COL5A3-201ENST00000264828 P3H3Q8IVL6 736 aa24.65■■□□□ 1.54
COL5A3-201ENST00000264828 ANP32BQ92688 251 aaKnown RBP24.56■■□□□ 1.52
COL5A3-201ENST00000264828 HSP90AA1P07900 732 aaKnown RBP24.54■■□□□ 1.52
COL5A3-201ENST00000264828 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
COL5A3-201ENST00000264828 ZNF777Q9ULD5 760 aaPredicted RBP24.51■■□□□ 1.51
COL5A3-201ENST00000264828 NBR1Q14596 966 aa24.49■■□□□ 1.51
COL5A3-201ENST00000264828 CCDC180Q9P1Z9 1646 aa24.49■■□□□ 1.51
COL5A3-201ENST00000264828 HNRNPUQ00839 825 aaKnown RBP eCLIP24.47■■□□□ 1.51
COL5A3-201ENST00000264828 SALL2Q9Y467 1007 aaPredicted RBP24.46■■□□□ 1.51
COL5A3-201ENST00000264828 FAM9BQ8IZU0 186 aa24.45■■□□□ 1.51
COL5A3-201ENST00000264828 ARXQ96QS3 562 aa24.45■■□□□ 1.51
COL5A3-201ENST00000264828 CSRNP3Q8WYN3 585 aa24.45■■□□□ 1.5
COL5A3-201ENST00000264828 UPF2Q9HAU5 1272 aaKnown RBP24.38■■□□□ 1.49
COL5A3-201ENST00000264828 DDX10Q13206 875 aaKnown RBP24.36■■□□□ 1.49
COL5A3-201ENST00000264828 TONSLQ96HA7 1378 aa24.31■■□□□ 1.48
COL5A3-201ENST00000264828 GLIPR1L2Q4G1C9 344 aa24.28■■□□□ 1.48
COL5A3-201ENST00000264828 CHGAP10645 457 aaKnown RBP24.28■■□□□ 1.48
COL5A3-201ENST00000264828 CCDC136Q96JN2 1154 aa24.27■■□□□ 1.48
COL5A3-201ENST00000264828 IRX6P78412 446 aaPredicted RBP24.23■■□□□ 1.47
COL5A3-201ENST00000264828 PLPPR3Q6T4P5 718 aa24.18■■□□□ 1.46
COL5A3-201ENST00000264828 RB1CC1Q8TDY2 1594 aa24.15■■□□□ 1.46
COL5A3-201ENST00000264828 TMC1Q8TDI8 760 aa24.14■■□□□ 1.45
COL5A3-201ENST00000264828 STAG3Q9UJ98 1225 aa24.12■■□□□ 1.45
COL5A3-201ENST00000264828 SCAF1Q9H7N4 1312 aaKnown RBP24.1■■□□□ 1.45
COL5A3-201ENST00000264828 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.1■■□□□ 1.45
COL5A3-201ENST00000264828 ESF1Q9H501 851 aaKnown RBP24.07■■□□□ 1.44
COL5A3-201ENST00000264828 CHIC2Q9UKJ5 165 aa24.06■■□□□ 1.44
COL5A3-201ENST00000264828 WDR43Q15061 677 aaKnown RBP eCLIP24.05■■□□□ 1.44
COL5A3-201ENST00000264828 MRS2Q9HD23 443 aa24.05■■□□□ 1.44
COL5A3-201ENST00000264828 HIRIP3Q9BW71 556 aaPredicted RBP24.03■■□□□ 1.44
COL5A3-201ENST00000264828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.02■■□□□ 1.44
COL5A3-201ENST00000264828 MIER1Q8N108 512 aa24.01■■□□□ 1.43
COL5A3-201ENST00000264828 NPM1P06748 294 aaKnown RBP eCLIP23.99■■□□□ 1.43
COL5A3-201ENST00000264828 KDM2AQ9Y2K7 1162 aa23.98■■□□□ 1.43
COL5A3-201ENST00000264828 SENP3-EIF4A1A0A087X0R7 540 aa23.87■■□□□ 1.41
COL5A3-201ENST00000264828 DCAF1Q9Y4B6 1507 aa23.87■■□□□ 1.41
COL5A3-201ENST00000264828 MYH16Q9H6N6 1097 aa23.86■■□□□ 1.41
COL5A3-201ENST00000264828 CHMP7Q8WUX9 453 aaPredicted RBP23.85■■□□□ 1.41
COL5A3-201ENST00000264828 SENP3Q9H4L4 574 aaPredicted RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms