Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
COPB1P53618 NIFKP9-201ENST00000419265 221 ntBASIC20.55■□□□□ 0.88
COPB1P53618 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.55■□□□□ 0.88
COPB1P53618 AC133681.1-201ENST00000465482 601 ntBASIC20.55■□□□□ 0.88
COPB1P53618 PRSS44-201ENST00000515154 1146 ntBASIC20.55■□□□□ 0.88
COPB1P53618 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.55■□□□□ 0.88
COPB1P53618 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.55■□□□□ 0.88
COPB1P53618 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.55■□□□□ 0.88
COPB1P53618 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COPB1P53618 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.55■□□□□ 0.88
COPB1P53618 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 PCDHB18P-201ENST00000524813 2368 ntBASIC20.54■□□□□ 0.88
COPB1P53618 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COPB1P53618 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 AC091390.4-202ENST00000476426 537 ntBASIC20.54■□□□□ 0.88
COPB1P53618 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.54■□□□□ 0.88
COPB1P53618 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COPB1P53618 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.54■□□□□ 0.88
COPB1P53618 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COPB1P53618 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COPB1P53618 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COPB1P53618 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COPB1P53618 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COPB1P53618 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 AL357033.4-201ENST00000617703 1807 ntBASIC20.53■□□□□ 0.88
COPB1P53618 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 AC110285.5-201ENST00000611501 352 ntBASIC20.53■□□□□ 0.88
COPB1P53618 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COPB1P53618 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
COPB1P53618 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COPB1P53618 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COPB1P53618 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.52■□□□□ 0.88
COPB1P53618 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.52■□□□□ 0.88
COPB1P53618 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.52■□□□□ 0.88
COPB1P53618 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.52■□□□□ 0.88
COPB1P53618 ESRRAP1-201ENST00000400596 1257 ntBASIC20.52■□□□□ 0.88
COPB1P53618 RPS2P4-201ENST00000476944 856 ntBASIC20.52■□□□□ 0.88
COPB1P53618 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COPB1P53618 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.51■□□□□ 0.87
COPB1P53618 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.51■□□□□ 0.87
COPB1P53618 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 RN7SL471P-201ENST00000580476 299 ntBASIC20.51■□□□□ 0.87
COPB1P53618 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.51■□□□□ 0.87
COPB1P53618 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COPB1P53618 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms