RNA–Protein interactions for RNA: ENST00000549417.5

LIN7A-202, Transcript of lin-7 homolog A, crumbs cell polarity complex component, humanhuman

TSL 1 (best)

Gene LIN7A, Length 905 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7A-202ENST00000549417 NISCHQ9Y2I1 1504 aa17.72■□□□□ 0.43
LIN7A-202ENST00000549417 ABCC9O60706 1549 aa16.83■□□□□ 0.28
LIN7A-202ENST00000549417 AEBP2Q6ZN18 517 aaPredicted RBP16.52■□□□□ 0.24
LIN7A-202ENST00000549417 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
LIN7A-202ENST00000549417 CCDC180Q9P1Z9 1646 aa16.12■□□□□ 0.17
LIN7A-202ENST00000549417 CHIC1Q5VXU3 224 aa15.82■□□□□ 0.12
LIN7A-202ENST00000549417 RB1CC1Q8TDY2 1594 aa15.66■□□□□ 0.1
LIN7A-202ENST00000549417 PABPN1Q86U42 306 aaKnown RBP eCLIP15.62■□□□□ 0.09
LIN7A-202ENST00000549417 NACADO15069 1562 aa15.38■□□□□ 0.05
LIN7A-202ENST00000549417 DCAF8L2P0C7V8 631 aa15.38■□□□□ 0.05
LIN7A-202ENST00000549417 UNC13AQ9UPW8 1703 aa15.37■□□□□ 0.05
LIN7A-202ENST00000549417 DNAJC5Q9H3Z4 198 aa15.37■□□□□ 0.05
LIN7A-202ENST00000549417 BICRAQ9NZM4 1560 aa15.27■□□□□ 0.03
LIN7A-202ENST00000549417 CECR2Q9BXF3 1484 aa15.19■□□□□ 0.02
LIN7A-202ENST00000549417 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
LIN7A-202ENST00000549417 EIF4G1Q04637 1599 aaKnown RBP14.94□□□□□ -0.02
LIN7A-202ENST00000549417 MYO15BQ96JP2 1530 aa14.9□□□□□ -0.02
LIN7A-202ENST00000549417 SHROOM4Q9ULL8 1493 aa14.86□□□□□ -0.03
LIN7A-202ENST00000549417 SCRIBQ14160 1630 aa14.78□□□□□ -0.04
LIN7A-202ENST00000549417 CUX2O14529 1486 aa14.65□□□□□ -0.06
LIN7A-202ENST00000549417 TRIM41Q8WV44 630 aa14.57□□□□□ -0.08
LIN7A-202ENST00000549417 ERCC6Q03468 1493 aa14.56□□□□□ -0.08
LIN7A-202ENST00000549417 ZCCHC6Q5VYS8 1495 aaKnown RBP14.56□□□□□ -0.08
LIN7A-202ENST00000549417 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
LIN7A-202ENST00000549417 NESP48681 1621 aa14.3□□□□□ -0.12
LIN7A-202ENST00000549417 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
LIN7A-202ENST00000549417 SENP3Q9H4L4 574 aaPredicted RBP14.21□□□□□ -0.13
LIN7A-202ENST00000549417 THOC2Q8NI27 1593 aaKnown RBP14.21□□□□□ -0.14
LIN7A-202ENST00000549417 SMARCA2P51531 1590 aa14.15□□□□□ -0.14
LIN7A-202ENST00000549417 ATAD2BQ9ULI0 1458 aa14.12□□□□□ -0.15
LIN7A-202ENST00000549417 KIF21AQ7Z4S6 1674 aa14.07□□□□□ -0.16
LIN7A-202ENST00000549417 HMGXB3Q12766 1538 aa14.05□□□□□ -0.16
LIN7A-202ENST00000549417 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
LIN7A-202ENST00000549417 PHF23Q9BUL5 403 aaPredicted RBP13.99□□□□□ -0.17
LIN7A-202ENST00000549417 BAZ1BQ9UIG0 1483 aaKnown RBP13.98□□□□□ -0.17
LIN7A-202ENST00000549417 SMARCA4P51532 1647 aa13.97□□□□□ -0.17
LIN7A-202ENST00000549417 BAZ1AQ9NRL2 1556 aaPredicted RBP13.97□□□□□ -0.17
LIN7A-202ENST00000549417 PDS5BQ9NTI5 1447 aa13.96□□□□□ -0.18
LIN7A-202ENST00000549417 OSCARQ8IYS5 282 aa13.93□□□□□ -0.18
LIN7A-202ENST00000549417 MRC2Q9UBG0 1479 aa13.89□□□□□ -0.19
LIN7A-202ENST00000549417 WDR62O43379 1518 aa13.85□□□□□ -0.19
LIN7A-202ENST00000549417 RIMBP3CA6NJZ7 1639 aa13.84□□□□□ -0.19
LIN7A-202ENST00000549417 RIMBP3BA6NNM3 1639 aa13.84□□□□□ -0.19
LIN7A-202ENST00000549417 RIMBP3Q9UFD9 1639 aa13.84□□□□□ -0.19
LIN7A-202ENST00000549417 CADPSQ9ULU8 1353 aa13.79□□□□□ -0.2
LIN7A-202ENST00000549417 TRHP20396 242 aaPredicted RBP13.78□□□□□ -0.2
LIN7A-202ENST00000549417 PEG3Q9GZU2 1588 aa13.77□□□□□ -0.21
LIN7A-202ENST00000549417 CEP164Q9UPV0 1460 aa13.72□□□□□ -0.21
LIN7A-202ENST00000549417 ARHGEF11O15085 1522 aa13.71□□□□□ -0.21
LIN7A-202ENST00000549417 CYB5RLQ6IPT4 315 aa13.71□□□□□ -0.21
LIN7A-202ENST00000549417 MROH2BQ7Z745 1585 aa13.7□□□□□ -0.22
LIN7A-202ENST00000549417 FANCD2Q9BXW9 1451 aa13.66□□□□□ -0.22
LIN7A-202ENST00000549417 URB2Q14146 1524 aaKnown RBP13.6□□□□□ -0.23
LIN7A-202ENST00000549417 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
LIN7A-202ENST00000549417 ZNF608Q9ULD9 1512 aaPredicted RBP13.55□□□□□ -0.24
LIN7A-202ENST00000549417 WIZO95785 1651 aa13.53□□□□□ -0.24
LIN7A-202ENST00000549417 CFTRP13569 1480 aa13.49□□□□□ -0.25
LIN7A-202ENST00000549417 CHD1O14646 1710 aa13.46□□□□□ -0.25
LIN7A-202ENST00000549417 IFT140Q96RY7 1462 aa13.44□□□□□ -0.26
LIN7A-202ENST00000549417 FBLN2P98095 1184 aa13.44□□□□□ -0.26
LIN7A-202ENST00000549417 EIF4G3O43432 1585 aaKnown RBP13.41□□□□□ -0.26
LIN7A-202ENST00000549417 RSF1Q96T23 1441 aaPredicted RBP13.37□□□□□ -0.27
LIN7A-202ENST00000549417 AQRO60306 1485 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIN7A-202ENST00000549417 TOPBP1Q92547 1522 aa13.33□□□□□ -0.28
LIN7A-202ENST00000549417 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
LIN7A-202ENST00000549417 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
LIN7A-202ENST00000549417 TOP2AP11388 1531 aaKnown RBP13.25□□□□□ -0.29
LIN7A-202ENST00000549417 TARBP1Q13395 1621 aaKnown RBP13.24□□□□□ -0.29
LIN7A-202ENST00000549417 CLASP1Q7Z460 1538 aa13.23□□□□□ -0.29
LIN7A-202ENST00000549417 DNMBPQ6XZF7 1577 aa13.21□□□□□ -0.29
LIN7A-202ENST00000549417 TDRD9Q8NDG6 1382 aaKnown RBP13.19□□□□□ -0.3
LIN7A-202ENST00000549417 SNAPC4Q5SXM2 1469 aa13.18□□□□□ -0.3
LIN7A-202ENST00000549417 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
LIN7A-202ENST00000549417 ABCC8Q09428 1581 aa13.18□□□□□ -0.3
LIN7A-202ENST00000549417 RAD54L2Q9Y4B4 1467 aa13.17□□□□□ -0.3
LIN7A-202ENST00000549417 SYNJ1O43426 1573 aa13.17□□□□□ -0.3
LIN7A-202ENST00000549417 GAPVD1Q14C86 1478 aa13.16□□□□□ -0.3
LIN7A-202ENST00000549417 POLA1P09884 1462 aaPredicted RBP13.16□□□□□ -0.3
LIN7A-202ENST00000549417 FOXD1Q16676 465 aa13.15□□□□□ -0.3
LIN7A-202ENST00000549417 CCDC88BA6NC98 1476 aa13.14□□□□□ -0.31
LIN7A-202ENST00000549417 SOGA1O94964 1423 aa13.09□□□□□ -0.31
LIN7A-202ENST00000549417 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
LIN7A-202ENST00000549417 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
LIN7A-202ENST00000549417 KDM4FA0A1W2PPD8 638 aa13.06□□□□□ -0.32
LIN7A-202ENST00000549417 KIF13AQ9H1H9 1805 aa13.05□□□□□ -0.32
LIN7A-202ENST00000549417 SYNJ2O15056 1496 aa13.04□□□□□ -0.32
LIN7A-202ENST00000549417 GRIN2BQ13224 1484 aa13.02□□□□□ -0.33
LIN7A-202ENST00000549417 FGD5Q6ZNL6 1462 aa13□□□□□ -0.33
LIN7A-202ENST00000549417 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
LIN7A-202ENST00000549417 PBRM1Q86U86 1689 aa12.96□□□□□ -0.33
LIN7A-202ENST00000549417 FAM69CQ0P6D2 419 aa12.94□□□□□ -0.34
LIN7A-202ENST00000549417 CEP170Q5SW79 1584 aa12.94□□□□□ -0.34
LIN7A-202ENST00000549417 CUX1P39880 1505 aa12.9□□□□□ -0.34
LIN7A-202ENST00000549417 KDM6BO15054 1643 aa12.88□□□□□ -0.35
LIN7A-202ENST00000549417 TSPOAP1O95153 1857 aa12.87□□□□□ -0.35
LIN7A-202ENST00000549417 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
LIN7A-202ENST00000549417 ABCC10Q5T3U5 1492 aa12.86□□□□□ -0.35
LIN7A-202ENST00000549417 DIP2BQ9P265 1576 aa12.83□□□□□ -0.36
LIN7A-202ENST00000549417 SHROOM2Q13796 1616 aa12.83□□□□□ -0.36
LIN7A-202ENST00000549417 NUP160Q12769 1436 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms