RNA–Protein interactions for RNA: ENST00000510676.6

PTCD2-208, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 5

Gene PTCD2, Length 1,001 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-208ENST00000510676 NISCHQ9Y2I1 1504 aa28.44■■■□□ 2.14
PTCD2-208ENST00000510676 ABCC9O60706 1549 aa26.82■■□□□ 1.88
PTCD2-208ENST00000510676 DNAJC5BQ9UF47 199 aa26.12■■□□□ 1.77
PTCD2-208ENST00000510676 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
PTCD2-208ENST00000510676 RB1CC1Q8TDY2 1594 aa25.15■■□□□ 1.62
PTCD2-208ENST00000510676 AEBP2Q6ZN18 517 aaPredicted RBP24.82■■□□□ 1.56
PTCD2-208ENST00000510676 PABPN1Q86U42 306 aaKnown RBP eCLIP24.8■■□□□ 1.56
PTCD2-208ENST00000510676 NACADO15069 1562 aa24.78■■□□□ 1.56
PTCD2-208ENST00000510676 DNAJC5Q9H3Z4 198 aa24.74■■□□□ 1.55
PTCD2-208ENST00000510676 UNC13AQ9UPW8 1703 aa24.52■■□□□ 1.52
PTCD2-208ENST00000510676 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
PTCD2-208ENST00000510676 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
PTCD2-208ENST00000510676 DCAF8L2P0C7V8 631 aa24.22■■□□□ 1.47
PTCD2-208ENST00000510676 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
PTCD2-208ENST00000510676 MYO15BQ96JP2 1530 aa24.21■■□□□ 1.47
PTCD2-208ENST00000510676 SHROOM4Q9ULL8 1493 aa24.16■■□□□ 1.46
PTCD2-208ENST00000510676 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.43
PTCD2-208ENST00000510676 CUX2O14529 1486 aa23.62■■□□□ 1.37
PTCD2-208ENST00000510676 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
PTCD2-208ENST00000510676 DCAF1Q9Y4B6 1507 aa23.51■■□□□ 1.35
PTCD2-208ENST00000510676 SCRIBQ14160 1630 aa23.48■■□□□ 1.35
PTCD2-208ENST00000510676 ZCCHC6Q5VYS8 1495 aaKnown RBP23.37■■□□□ 1.33
PTCD2-208ENST00000510676 ERCC6Q03468 1493 aa23.23■■□□□ 1.31
PTCD2-208ENST00000510676 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
PTCD2-208ENST00000510676 NCAPD3P42695 1498 aa22.94■■□□□ 1.26
PTCD2-208ENST00000510676 THOC2Q8NI27 1593 aaKnown RBP22.79■■□□□ 1.24
PTCD2-208ENST00000510676 NESP48681 1621 aa22.78■■□□□ 1.24
PTCD2-208ENST00000510676 ATAD2BQ9ULI0 1458 aa22.68■■□□□ 1.22
PTCD2-208ENST00000510676 HMGXB3Q12766 1538 aa22.65■■□□□ 1.22
PTCD2-208ENST00000510676 SMARCA2P51531 1590 aa22.55■■□□□ 1.2
PTCD2-208ENST00000510676 LAMC3Q9Y6N6 1575 aa22.51■■□□□ 1.19
PTCD2-208ENST00000510676 PDS5BQ9NTI5 1447 aa22.42■■□□□ 1.18
PTCD2-208ENST00000510676 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
PTCD2-208ENST00000510676 SMARCA4P51532 1647 aa22.36■■□□□ 1.17
PTCD2-208ENST00000510676 BAZ1BQ9UIG0 1483 aaKnown RBP22.35■■□□□ 1.17
PTCD2-208ENST00000510676 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
PTCD2-208ENST00000510676 OSCARQ8IYS5 282 aa22.33■■□□□ 1.17
PTCD2-208ENST00000510676 WDR62O43379 1518 aa22.28■■□□□ 1.16
PTCD2-208ENST00000510676 MRC2Q9UBG0 1479 aa22.28■■□□□ 1.16
PTCD2-208ENST00000510676 PEG3Q9GZU2 1588 aa22.25■■□□□ 1.15
PTCD2-208ENST00000510676 CADPSQ9ULU8 1353 aa22.14■■□□□ 1.14
PTCD2-208ENST00000510676 RIMBP3CA6NJZ7 1639 aa22.12■■□□□ 1.13
PTCD2-208ENST00000510676 RIMBP3BA6NNM3 1639 aa22.12■■□□□ 1.13
PTCD2-208ENST00000510676 RIMBP3Q9UFD9 1639 aa22.12■■□□□ 1.13
PTCD2-208ENST00000510676 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
PTCD2-208ENST00000510676 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
PTCD2-208ENST00000510676 MROH2BQ7Z745 1585 aa21.87■■□□□ 1.09
PTCD2-208ENST00000510676 FANCD2Q9BXW9 1451 aa21.86■■□□□ 1.09
PTCD2-208ENST00000510676 TRHP20396 242 aaPredicted RBP21.84■■□□□ 1.09
PTCD2-208ENST00000510676 CYB5RLQ6IPT4 315 aa21.82■■□□□ 1.08
PTCD2-208ENST00000510676 URB2Q14146 1524 aaKnown RBP21.75■■□□□ 1.07
PTCD2-208ENST00000510676 CFTRP13569 1480 aa21.71■■□□□ 1.07
PTCD2-208ENST00000510676 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
PTCD2-208ENST00000510676 ZNF608Q9ULD9 1512 aaPredicted RBP21.63■■□□□ 1.05
PTCD2-208ENST00000510676 IFT140Q96RY7 1462 aa21.59■■□□□ 1.05
PTCD2-208ENST00000510676 RSF1Q96T23 1441 aaPredicted RBP21.59■■□□□ 1.05
PTCD2-208ENST00000510676 WIZO95785 1651 aa21.5■■□□□ 1.03
PTCD2-208ENST00000510676 EIF4G3O43432 1585 aaKnown RBP21.44■■□□□ 1.02
PTCD2-208ENST00000510676 CHD1O14646 1710 aa21.42■■□□□ 1.02
PTCD2-208ENST00000510676 TOPBP1Q92547 1522 aa21.34■■□□□ 1.01
PTCD2-208ENST00000510676 AQRO60306 1485 aaKnown RBP eCLIP21.3■■□□□ 1
PTCD2-208ENST00000510676 PRDM2Q13029 1718 aa21.29■■□□□ 1
PTCD2-208ENST00000510676 CLASP1Q7Z460 1538 aa21.27■■□□□ 1
PTCD2-208ENST00000510676 FBLN2P98095 1184 aa21.26■□□□□ 0.99
PTCD2-208ENST00000510676 ABCC8Q09428 1581 aa21.26■□□□□ 0.99
PTCD2-208ENST00000510676 TARBP1Q13395 1621 aaKnown RBP21.25■□□□□ 0.99
PTCD2-208ENST00000510676 TOP2AP11388 1531 aaKnown RBP21.23■□□□□ 0.99
PTCD2-208ENST00000510676 ILDR1Q86SU0 546 aaPredicted RBP21.22■□□□□ 0.99
PTCD2-208ENST00000510676 DNMBPQ6XZF7 1577 aa21.17■□□□□ 0.98
PTCD2-208ENST00000510676 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
PTCD2-208ENST00000510676 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
PTCD2-208ENST00000510676 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.97
PTCD2-208ENST00000510676 POLA1P09884 1462 aaPredicted RBP21.07■□□□□ 0.96
PTCD2-208ENST00000510676 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
PTCD2-208ENST00000510676 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
PTCD2-208ENST00000510676 TDRD9Q8NDG6 1382 aaKnown RBP21■□□□□ 0.95
PTCD2-208ENST00000510676 CHMP7Q8WUX9 453 aaPredicted RBP21■□□□□ 0.95
PTCD2-208ENST00000510676 CCDC88BA6NC98 1476 aa21■□□□□ 0.95
PTCD2-208ENST00000510676 WDR97A6NE52 1622 aa21■□□□□ 0.95
PTCD2-208ENST00000510676 RAD54L2Q9Y4B4 1467 aa20.96■□□□□ 0.95
PTCD2-208ENST00000510676 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
PTCD2-208ENST00000510676 SOGA1O94964 1423 aa20.93■□□□□ 0.94
PTCD2-208ENST00000510676 KDM4FA0A1W2PPD8 638 aa20.89■□□□□ 0.93
PTCD2-208ENST00000510676 GRIN2BQ13224 1484 aa20.88■□□□□ 0.93
PTCD2-208ENST00000510676 PHF23Q9BUL5 403 aaPredicted RBP20.87■□□□□ 0.93
PTCD2-208ENST00000510676 KIF13AQ9H1H9 1805 aa20.84■□□□□ 0.93
PTCD2-208ENST00000510676 ERCC6L2Q5T890 1561 aa20.8■□□□□ 0.92
PTCD2-208ENST00000510676 FGD5Q6ZNL6 1462 aa20.76■□□□□ 0.91
PTCD2-208ENST00000510676 CEP170Q5SW79 1584 aa20.69■□□□□ 0.9
PTCD2-208ENST00000510676 ABCC10Q5T3U5 1492 aa20.67■□□□□ 0.9
PTCD2-208ENST00000510676 PBRM1Q86U86 1689 aa20.64■□□□□ 0.9
PTCD2-208ENST00000510676 NUP160Q12769 1436 aa20.63■□□□□ 0.89
PTCD2-208ENST00000510676 SHROOM2Q13796 1616 aa20.63■□□□□ 0.89
PTCD2-208ENST00000510676 GRIN2AQ12879 1464 aa20.62■□□□□ 0.89
PTCD2-208ENST00000510676 FAM69CQ0P6D2 419 aa20.61■□□□□ 0.89
PTCD2-208ENST00000510676 CUX1P39880 1505 aa20.61■□□□□ 0.89
PTCD2-208ENST00000510676 KDM6BO15054 1643 aa20.58■□□□□ 0.89
PTCD2-208ENST00000510676 MAPKBP1O60336 1514 aa20.56■□□□□ 0.88
PTCD2-208ENST00000510676 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
PTCD2-208ENST00000510676 DIP2BQ9P265 1576 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms