RNA–Protein interactions for RNA: ENST00000509206.1

RNF4-211, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-211ENST00000509206 AEBP2Q6ZN18 517 aaPredicted RBP11.25□□□□□ -0.61
RNF4-211ENST00000509206 CHIC1Q5VXU3 224 aa10.94□□□□□ -0.66
RNF4-211ENST00000509206 NISCHQ9Y2I1 1504 aa9.76□□□□□ -0.85
RNF4-211ENST00000509206 SENP3Q9H4L4 574 aaPredicted RBP9.64□□□□□ -0.87
RNF4-211ENST00000509206 PHF23Q9BUL5 403 aaPredicted RBP9.57□□□□□ -0.88
RNF4-211ENST00000509206 ABCC9O60706 1549 aa9.4□□□□□ -0.91
RNF4-211ENST00000509206 DNAJC5BQ9UF47 199 aa9.17□□□□□ -0.94
RNF4-211ENST00000509206 FOXD1Q16676 465 aa8.91□□□□□ -0.98
RNF4-211ENST00000509206 PLPPR3Q6T4P5 718 aa8.88□□□□□ -0.99
RNF4-211ENST00000509206 CCDC180Q9P1Z9 1646 aa8.85□□□□□ -0.99
RNF4-211ENST00000509206 PABPN1Q86U42 306 aaKnown RBP eCLIP8.77□□□□□ -1.01
RNF4-211ENST00000509206 DNAJC5Q9H3Z4 198 aa8.77□□□□□ -1.01
RNF4-211ENST00000509206 RB1CC1Q8TDY2 1594 aa8.72□□□□□ -1.01
RNF4-211ENST00000509206 DCAF8L2P0C7V8 631 aa8.7□□□□□ -1.02
RNF4-211ENST00000509206 NACADO15069 1562 aa8.54□□□□□ -1.04
RNF4-211ENST00000509206 ADRA2BP18089 450 aa8.51□□□□□ -1.05
RNF4-211ENST00000509206 CECR2Q9BXF3 1484 aa8.51□□□□□ -1.05
RNF4-211ENST00000509206 PPP6R1Q9UPN7 881 aa8.48□□□□□ -1.05
RNF4-211ENST00000509206 PIAS4Q8N2W9 510 aaPredicted RBP8.43□□□□□ -1.06
RNF4-211ENST00000509206 CC2D2AQ9P2K1 1620 aa8.4□□□□□ -1.06
RNF4-211ENST00000509206 BICRAQ9NZM4 1560 aa8.39□□□□□ -1.07
RNF4-211ENST00000509206 UNC13AQ9UPW8 1703 aa8.37□□□□□ -1.07
RNF4-211ENST00000509206 TRIM41Q8WV44 630 aa8.32□□□□□ -1.08
RNF4-211ENST00000509206 MSH5O43196 834 aa8.3□□□□□ -1.08
RNF4-211ENST00000509206 EIF4G1Q04637 1599 aaKnown RBP8.27□□□□□ -1.09
RNF4-211ENST00000509206 SHROOM4Q9ULL8 1493 aa8.27□□□□□ -1.09
RNF4-211ENST00000509206 MYO15BQ96JP2 1530 aa8.24□□□□□ -1.09
RNF4-211ENST00000509206 CUX2O14529 1486 aa8.23□□□□□ -1.09
RNF4-211ENST00000509206 ERCC6Q03468 1493 aa8.19□□□□□ -1.1
RNF4-211ENST00000509206 SCRIBQ14160 1630 aa8.15□□□□□ -1.1
RNF4-211ENST00000509206 DCAF1Q9Y4B6 1507 aa7.99□□□□□ -1.13
RNF4-211ENST00000509206 ZCCHC6Q5VYS8 1495 aaKnown RBP7.96□□□□□ -1.13
RNF4-211ENST00000509206 OSCARQ8IYS5 282 aa7.93□□□□□ -1.14
RNF4-211ENST00000509206 NCAPD3P42695 1498 aa7.91□□□□□ -1.14
RNF4-211ENST00000509206 NESP48681 1621 aa7.91□□□□□ -1.14
RNF4-211ENST00000509206 TRHP20396 242 aaPredicted RBP7.89□□□□□ -1.15
RNF4-211ENST00000509206 SMARCA2P51531 1590 aa7.84□□□□□ -1.15
RNF4-211ENST00000509206 SCAF1Q9H7N4 1312 aaKnown RBP7.84□□□□□ -1.15
RNF4-211ENST00000509206 PDS5BQ9NTI5 1447 aa7.84□□□□□ -1.15
RNF4-211ENST00000509206 ATAD2BQ9ULI0 1458 aa7.83□□□□□ -1.16
RNF4-211ENST00000509206 THOC2Q8NI27 1593 aaKnown RBP7.83□□□□□ -1.16
RNF4-211ENST00000509206 PPP4R3CPQ6ZMV5 832 aa7.8□□□□□ -1.16
RNF4-211ENST00000509206 KCNA4P22459 653 aa7.78□□□□□ -1.16
RNF4-211ENST00000509206 CYB5RLQ6IPT4 315 aa7.78□□□□□ -1.16
RNF4-211ENST00000509206 LAMC3Q9Y6N6 1575 aa7.77□□□□□ -1.17
RNF4-211ENST00000509206 BAZ1BQ9UIG0 1483 aaKnown RBP7.77□□□□□ -1.17
RNF4-211ENST00000509206 BAZ1AQ9NRL2 1556 aaPredicted RBP7.76□□□□□ -1.17
RNF4-211ENST00000509206 HMGXB3Q12766 1538 aa7.76□□□□□ -1.17
RNF4-211ENST00000509206 MRC2Q9UBG0 1479 aa7.74□□□□□ -1.17
RNF4-211ENST00000509206 MAPK8IP2Q13387 824 aaPredicted RBP7.73□□□□□ -1.17
RNF4-211ENST00000509206 KIF21AQ7Z4S6 1674 aa7.73□□□□□ -1.17
RNF4-211ENST00000509206 CADPSQ9ULU8 1353 aa7.71□□□□□ -1.18
RNF4-211ENST00000509206 POTEDQ86YR6 584 aa7.7□□□□□ -1.18
RNF4-211ENST00000509206 RIMBP3CA6NJZ7 1639 aa7.7□□□□□ -1.18
RNF4-211ENST00000509206 RIMBP3BA6NNM3 1639 aa7.7□□□□□ -1.18
RNF4-211ENST00000509206 RIMBP3Q9UFD9 1639 aa7.7□□□□□ -1.18
RNF4-211ENST00000509206 WDR62O43379 1518 aa7.67□□□□□ -1.18
RNF4-211ENST00000509206 SMARCA4P51532 1647 aa7.67□□□□□ -1.18
RNF4-211ENST00000509206 ARHGEF11O15085 1522 aa7.66□□□□□ -1.18
RNF4-211ENST00000509206 DMRT2Q9Y5R5 561 aa7.65□□□□□ -1.18
RNF4-211ENST00000509206 CEP164Q9UPV0 1460 aa7.64□□□□□ -1.19
RNF4-211ENST00000509206 FBLN2P98095 1184 aa7.62□□□□□ -1.19
RNF4-211ENST00000509206 NCBP3Q53F19 620 aaKnown RBP7.62□□□□□ -1.19
RNF4-211ENST00000509206 ILDR1Q86SU0 546 aaPredicted RBP7.61□□□□□ -1.19
RNF4-211ENST00000509206 CNKSR2Q8WXI2 1034 aa7.61□□□□□ -1.19
RNF4-211ENST00000509206 FANCD2Q9BXW9 1451 aa7.59□□□□□ -1.19
RNF4-211ENST00000509206 EHMT2Q96KQ7 1210 aa7.58□□□□□ -1.2
RNF4-211ENST00000509206 PEG3Q9GZU2 1588 aa7.55□□□□□ -1.2
RNF4-211ENST00000509206 ARAP1Q96P48 1450 aa7.54□□□□□ -1.2
RNF4-211ENST00000509206 MROH2BQ7Z745 1585 aa7.51□□□□□ -1.21
RNF4-211ENST00000509206 URB2Q14146 1524 aaKnown RBP7.51□□□□□ -1.21
RNF4-211ENST00000509206 ZNF608Q9ULD9 1512 aaPredicted RBP7.51□□□□□ -1.21
RNF4-211ENST00000509206 IFT140Q96RY7 1462 aa7.5□□□□□ -1.21
RNF4-211ENST00000509206 RSF1Q96T23 1441 aaPredicted RBP7.5□□□□□ -1.21
RNF4-211ENST00000509206 SLC4A1APQ9BWU0 796 aaKnown RBP7.47□□□□□ -1.21
RNF4-211ENST00000509206 RNF216Q9NWF9 866 aaPredicted RBP7.47□□□□□ -1.21
RNF4-211ENST00000509206 CFTRP13569 1480 aa7.47□□□□□ -1.21
RNF4-211ENST00000509206 CHMP7Q8WUX9 453 aaPredicted RBP7.46□□□□□ -1.22
RNF4-211ENST00000509206 NPM3O75607 178 aaKnown RBP7.45□□□□□ -1.22
RNF4-211ENST00000509206 HOXD11P31277 338 aaPredicted RBP7.44□□□□□ -1.22
RNF4-211ENST00000509206 AQRO60306 1485 aaKnown RBP eCLIP7.43□□□□□ -1.221e-7■■■■■ 35.4
RNF4-211ENST00000509206 DCAF8L1A6NGE4 600 aa7.42□□□□□ -1.22
RNF4-211ENST00000509206 CHD1O14646 1710 aa7.4□□□□□ -1.23
RNF4-211ENST00000509206 EIF4G3O43432 1585 aaKnown RBP7.39□□□□□ -1.23
RNF4-211ENST00000509206 WIZO95785 1651 aa7.38□□□□□ -1.23
RNF4-211ENST00000509206 ABCC8Q09428 1581 aa7.38□□□□□ -1.23
RNF4-211ENST00000509206 TOPBP1Q92547 1522 aa7.37□□□□□ -1.23
RNF4-211ENST00000509206 GAPVD1Q14C86 1478 aa7.36□□□□□ -1.23
RNF4-211ENST00000509206 KDM4FA0A1W2PPD8 638 aa7.36□□□□□ -1.23
RNF4-211ENST00000509206 TDRD9Q8NDG6 1382 aaKnown RBP7.35□□□□□ -1.23
RNF4-211ENST00000509206 CSRNP3Q8WYN3 585 aa7.35□□□□□ -1.23
RNF4-211ENST00000509206 SYNJ1O43426 1573 aa7.34□□□□□ -1.23
RNF4-211ENST00000509206 FAM69CQ0P6D2 419 aa7.34□□□□□ -1.23
RNF4-211ENST00000509206 NPM1P06748 294 aaKnown RBP eCLIP7.33□□□□□ -1.24
RNF4-211ENST00000509206 SNAPC4Q5SXM2 1469 aa7.31□□□□□ -1.24
RNF4-211ENST00000509206 SOGA1O94964 1423 aa7.31□□□□□ -1.24
RNF4-211ENST00000509206 CLASP1Q7Z460 1538 aa7.31□□□□□ -1.24
RNF4-211ENST00000509206 FBXO41Q8TF61 875 aa7.3□□□□□ -1.24
RNF4-211ENST00000509206 DNMBPQ6XZF7 1577 aa7.29□□□□□ -1.24
RNF4-211ENST00000509206 RAD54L2Q9Y4B4 1467 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms