RNA–Protein interactions for RNA: ENST00000497377.5

HLA-B-254, Transcript of major histocompatibility complex, class I, B, humanhuman

Gene HLA-B, Length 917 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-B-254ENST00000497377 AEBP2Q6ZN18 517 aaPredicted RBP29.71■■■□□ 2.35
HLA-B-254ENST00000497377 CHIC1Q5VXU3 224 aa28.32■■■□□ 2.12
HLA-B-254ENST00000497377 NISCHQ9Y2I1 1504 aa27.78■■■□□ 2.04
HLA-B-254ENST00000497377 SENP3Q9H4L4 574 aaPredicted RBP25.4■■□□□ 1.66
HLA-B-254ENST00000497377 PHF23Q9BUL5 403 aaPredicted RBP25.09■■□□□ 1.61
HLA-B-254ENST00000497377 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
HLA-B-254ENST00000497377 ABCC9O60706 1549 aa24.1■■□□□ 1.45
HLA-B-254ENST00000497377 FOXD1Q16676 465 aa23.64■■□□□ 1.37
HLA-B-254ENST00000497377 RB1CC1Q8TDY2 1594 aa23.27■■□□□ 1.32
HLA-B-254ENST00000497377 NACADO15069 1562 aa23.25■■□□□ 1.31
HLA-B-254ENST00000497377 MYO15BQ96JP2 1530 aa23.15■■□□□ 1.3
HLA-B-254ENST00000497377 ZCCHC6Q5VYS8 1495 aaKnown RBP23.15■■□□□ 1.3
HLA-B-254ENST00000497377 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
HLA-B-254ENST00000497377 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
HLA-B-254ENST00000497377 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
HLA-B-254ENST00000497377 UNC13AQ9UPW8 1703 aa22.7■■□□□ 1.22
HLA-B-254ENST00000497377 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
HLA-B-254ENST00000497377 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
HLA-B-254ENST00000497377 PABPN1Q86U42 306 aaKnown RBP eCLIP22.49■■□□□ 1.19
HLA-B-254ENST00000497377 SHROOM4Q9ULL8 1493 aa22.38■■□□□ 1.17
HLA-B-254ENST00000497377 PIAS4Q8N2W9 510 aaPredicted RBP22.15■■□□□ 1.14
HLA-B-254ENST00000497377 PPP6R1Q9UPN7 881 aa22.15■■□□□ 1.14
HLA-B-254ENST00000497377 MSH5O43196 834 aa22.13■■□□□ 1.13
HLA-B-254ENST00000497377 ADRA2BP18089 450 aa22.13■■□□□ 1.13
HLA-B-254ENST00000497377 DNAJC5BQ9UF47 199 aa22.05■■□□□ 1.12
HLA-B-254ENST00000497377 EIF4G1Q04637 1599 aaKnown RBP21.93■■□□□ 1.1
HLA-B-254ENST00000497377 CC2D2AQ9P2K1 1620 aa21.83■■□□□ 1.08
HLA-B-254ENST00000497377 CECR2Q9BXF3 1484 aa21.67■■□□□ 1.06
HLA-B-254ENST00000497377 BAZ1AQ9NRL2 1556 aaPredicted RBP21.56■■□□□ 1.04
HLA-B-254ENST00000497377 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
HLA-B-254ENST00000497377 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
HLA-B-254ENST00000497377 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
HLA-B-254ENST00000497377 POTEDQ86YR6 584 aa21.42■■□□□ 1.02
HLA-B-254ENST00000497377 ATAD2BQ9ULI0 1458 aa21.42■■□□□ 1.02
HLA-B-254ENST00000497377 MROH2BQ7Z745 1585 aa21.38■■□□□ 1.01
HLA-B-254ENST00000497377 PEG3Q9GZU2 1588 aa21.37■■□□□ 1.01
HLA-B-254ENST00000497377 HMGXB3Q12766 1538 aa21.34■■□□□ 1.01
HLA-B-254ENST00000497377 BAZ1BQ9UIG0 1483 aaKnown RBP21.26■□□□□ 0.99
HLA-B-254ENST00000497377 RSF1Q96T23 1441 aaPredicted RBP21.15■□□□□ 0.98
HLA-B-254ENST00000497377 WIZO95785 1651 aa21.15■□□□□ 0.98
HLA-B-254ENST00000497377 TOP2AP11388 1531 aaKnown RBP20.96■□□□□ 0.95
HLA-B-254ENST00000497377 LAMC3Q9Y6N6 1575 aa20.89■□□□□ 0.93
HLA-B-254ENST00000497377 NESP48681 1621 aa20.84■□□□□ 0.93
HLA-B-254ENST00000497377 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
HLA-B-254ENST00000497377 CADPSQ9ULU8 1353 aa20.8■□□□□ 0.92
HLA-B-254ENST00000497377 PDS5BQ9NTI5 1447 aa20.74■□□□□ 0.91
HLA-B-254ENST00000497377 CCDC88BA6NC98 1476 aa20.69■□□□□ 0.9
HLA-B-254ENST00000497377 CFTRP13569 1480 aa20.69■□□□□ 0.9
HLA-B-254ENST00000497377 KIF21AQ7Z4S6 1674 aa20.63■□□□□ 0.89
HLA-B-254ENST00000497377 CUX2O14529 1486 aa20.62■□□□□ 0.89
HLA-B-254ENST00000497377 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.89
HLA-B-254ENST00000497377 THOC2Q8NI27 1593 aaKnown RBP20.57■□□□□ 0.88
HLA-B-254ENST00000497377 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
HLA-B-254ENST00000497377 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
HLA-B-254ENST00000497377 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
HLA-B-254ENST00000497377 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
HLA-B-254ENST00000497377 WDR62O43379 1518 aa20.43■□□□□ 0.86
HLA-B-254ENST00000497377 SCAF1Q9H7N4 1312 aaKnown RBP20.33■□□□□ 0.85
HLA-B-254ENST00000497377 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
HLA-B-254ENST00000497377 MAPK8IP2Q13387 824 aaPredicted RBP20.3■□□□□ 0.84
HLA-B-254ENST00000497377 ABCC8Q09428 1581 aa20.29■□□□□ 0.84
HLA-B-254ENST00000497377 TOPBP1Q92547 1522 aa20.22■□□□□ 0.83
HLA-B-254ENST00000497377 DNMBPQ6XZF7 1577 aa20.22■□□□□ 0.83
HLA-B-254ENST00000497377 DMRT2Q9Y5R5 561 aa20.13■□□□□ 0.81
HLA-B-254ENST00000497377 IFT140Q96RY7 1462 aa20.12■□□□□ 0.81
HLA-B-254ENST00000497377 CUX1P39880 1505 aa20.07■□□□□ 0.8
HLA-B-254ENST00000497377 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
HLA-B-254ENST00000497377 TARBP1Q13395 1621 aaKnown RBP20.01■□□□□ 0.79
HLA-B-254ENST00000497377 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
HLA-B-254ENST00000497377 SOGA1O94964 1423 aa19.97■□□□□ 0.79
HLA-B-254ENST00000497377 WRNQ14191 1432 aaPredicted RBP eCLIP19.96■□□□□ 0.79
HLA-B-254ENST00000497377 ZNF608Q9ULD9 1512 aaPredicted RBP19.96■□□□□ 0.79
HLA-B-254ENST00000497377 TOP2BQ02880 1626 aa19.93■□□□□ 0.78
HLA-B-254ENST00000497377 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
HLA-B-254ENST00000497377 RAD54L2Q9Y4B4 1467 aa19.92■□□□□ 0.78
HLA-B-254ENST00000497377 EIF4G3O43432 1585 aaKnown RBP19.92■□□□□ 0.78
HLA-B-254ENST00000497377 WDR97A6NE52 1622 aa19.92■□□□□ 0.78
HLA-B-254ENST00000497377 PPP4R3CPQ6ZMV5 832 aa19.92■□□□□ 0.78
HLA-B-254ENST00000497377 DNAJC5Q9H3Z4 198 aa19.92■□□□□ 0.78
HLA-B-254ENST00000497377 SYNJ1O43426 1573 aa19.88■□□□□ 0.77
HLA-B-254ENST00000497377 AQRO60306 1485 aaKnown RBP eCLIP19.86■□□□□ 0.77
HLA-B-254ENST00000497377 ABCA10Q8WWZ4 1543 aa19.84■□□□□ 0.77
HLA-B-254ENST00000497377 TDRD9Q8NDG6 1382 aaKnown RBP19.82■□□□□ 0.76
HLA-B-254ENST00000497377 GRIN2BQ13224 1484 aa19.76■□□□□ 0.75
HLA-B-254ENST00000497377 GAPVD1Q14C86 1478 aa19.75■□□□□ 0.75
HLA-B-254ENST00000497377 ABCA5Q8WWZ7 1642 aa19.75■□□□□ 0.75
HLA-B-254ENST00000497377 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
HLA-B-254ENST00000497377 MAGI1Q96QZ7 1491 aaPredicted RBP19.73■□□□□ 0.75
HLA-B-254ENST00000497377 PBRM1Q86U86 1689 aa19.71■□□□□ 0.75
HLA-B-254ENST00000497377 SNAPC4Q5SXM2 1469 aa19.69■□□□□ 0.74
HLA-B-254ENST00000497377 CHD1O14646 1710 aa19.66■□□□□ 0.74
HLA-B-254ENST00000497377 SYNJ2O15056 1496 aa19.62■□□□□ 0.73
HLA-B-254ENST00000497377 ERICH3Q5RHP9 1530 aa19.61■□□□□ 0.73
HLA-B-254ENST00000497377 FBLN2P98095 1184 aa19.61■□□□□ 0.73
HLA-B-254ENST00000497377 CHMP7Q8WUX9 453 aaPredicted RBP19.6■□□□□ 0.73
HLA-B-254ENST00000497377 KIF27Q86VH2 1401 aa19.56■□□□□ 0.72
HLA-B-254ENST00000497377 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
HLA-B-254ENST00000497377 FHAD1B1AJZ9 1412 aa19.54■□□□□ 0.72
HLA-B-254ENST00000497377 CNKSR2Q8WXI2 1034 aa19.53■□□□□ 0.72
HLA-B-254ENST00000497377 GRIN2AQ12879 1464 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms