RNA–Protein interactions for RNA: ENST00000489333.1

GABRE-210, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 2

Gene GABRE, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-210ENST00000489333 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
GABRE-210ENST00000489333 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
GABRE-210ENST00000489333 NISCHQ9Y2I1 1504 aa18.88■□□□□ 0.61
GABRE-210ENST00000489333 PHF23Q9BUL5 403 aaPredicted RBP17.41■□□□□ 0.38
GABRE-210ENST00000489333 SENP3Q9H4L4 574 aaPredicted RBP17.28■□□□□ 0.36
GABRE-210ENST00000489333 ABCC9O60706 1549 aa17.05■□□□□ 0.32
GABRE-210ENST00000489333 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
GABRE-210ENST00000489333 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
GABRE-210ENST00000489333 FOXD1Q16676 465 aa16.13■□□□□ 0.17
GABRE-210ENST00000489333 NACADO15069 1562 aa16.04■□□□□ 0.16
GABRE-210ENST00000489333 DCAF8L2P0C7V8 631 aa16.01■□□□□ 0.15
GABRE-210ENST00000489333 DNAJC5BQ9UF47 199 aa15.97■□□□□ 0.15
GABRE-210ENST00000489333 UNC13AQ9UPW8 1703 aa15.91■□□□□ 0.14
GABRE-210ENST00000489333 PLPPR3Q6T4P5 718 aa15.9■□□□□ 0.14
GABRE-210ENST00000489333 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
GABRE-210ENST00000489333 MYO15BQ96JP2 1530 aa15.75■□□□□ 0.11
GABRE-210ENST00000489333 BICRAQ9NZM4 1560 aa15.7■□□□□ 0.1
GABRE-210ENST00000489333 ZCCHC6Q5VYS8 1495 aaKnown RBP15.65■□□□□ 0.1
GABRE-210ENST00000489333 DCAF1Q9Y4B6 1507 aa15.56■□□□□ 0.08
GABRE-210ENST00000489333 SCRIBQ14160 1630 aa15.53■□□□□ 0.08
GABRE-210ENST00000489333 SHROOM4Q9ULL8 1493 aa15.45■□□□□ 0.06
GABRE-210ENST00000489333 PPP6R1Q9UPN7 881 aa15.42■□□□□ 0.06
GABRE-210ENST00000489333 CC2D2AQ9P2K1 1620 aa15.4■□□□□ 0.06
GABRE-210ENST00000489333 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
GABRE-210ENST00000489333 EIF4G1Q04637 1599 aaKnown RBP15.34■□□□□ 0.05
GABRE-210ENST00000489333 ADRA2BP18089 450 aa15.34■□□□□ 0.05
GABRE-210ENST00000489333 PIAS4Q8N2W9 510 aaPredicted RBP15.08■□□□□ 0
GABRE-210ENST00000489333 MSH5O43196 834 aa14.86□□□□□ -0.03
GABRE-210ENST00000489333 NCAPD3P42695 1498 aa14.78□□□□□ -0.04
GABRE-210ENST00000489333 SMARCA4P51532 1647 aa14.77□□□□□ -0.04
GABRE-210ENST00000489333 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
GABRE-210ENST00000489333 ERCC6Q03468 1493 aa14.73□□□□□ -0.05
GABRE-210ENST00000489333 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
GABRE-210ENST00000489333 HMGXB3Q12766 1538 aa14.7□□□□□ -0.06
GABRE-210ENST00000489333 DNAJC5Q9H3Z4 198 aa14.68□□□□□ -0.06
GABRE-210ENST00000489333 CUX2O14529 1486 aa14.67□□□□□ -0.06
GABRE-210ENST00000489333 BAZ1AQ9NRL2 1556 aaPredicted RBP14.67□□□□□ -0.06
GABRE-210ENST00000489333 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
GABRE-210ENST00000489333 NESP48681 1621 aa14.63□□□□□ -0.07
GABRE-210ENST00000489333 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
GABRE-210ENST00000489333 SUPT5HO00267 1087 aaKnown RBP14.57□□□□□ -0.08
GABRE-210ENST00000489333 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
GABRE-210ENST00000489333 THOC2Q8NI27 1593 aaKnown RBP14.5□□□□□ -0.09
GABRE-210ENST00000489333 LAMC3Q9Y6N6 1575 aa14.5□□□□□ -0.09
GABRE-210ENST00000489333 KIF21AQ7Z4S6 1674 aa14.49□□□□□ -0.09
GABRE-210ENST00000489333 WIZO95785 1651 aa14.43□□□□□ -0.1
GABRE-210ENST00000489333 PDS5BQ9NTI5 1447 aa14.4□□□□□ -0.1
GABRE-210ENST00000489333 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
GABRE-210ENST00000489333 MRC2Q9UBG0 1479 aa14.3□□□□□ -0.12
GABRE-210ENST00000489333 WDR62O43379 1518 aa14.26□□□□□ -0.13
GABRE-210ENST00000489333 CEP164Q9UPV0 1460 aa14.24□□□□□ -0.13
GABRE-210ENST00000489333 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
GABRE-210ENST00000489333 TOP2AP11388 1531 aaKnown RBP14.21□□□□□ -0.13
GABRE-210ENST00000489333 FANCD2Q9BXW9 1451 aa14.21□□□□□ -0.13
GABRE-210ENST00000489333 CFTRP13569 1480 aa14.17□□□□□ -0.14
GABRE-210ENST00000489333 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
GABRE-210ENST00000489333 TRIM41Q8WV44 630 aa14.11□□□□□ -0.15
GABRE-210ENST00000489333 URB2Q14146 1524 aaKnown RBP14.1□□□□□ -0.15
GABRE-210ENST00000489333 CCDC88BA6NC98 1476 aa14.04□□□□□ -0.16
GABRE-210ENST00000489333 PPP4R3CPQ6ZMV5 832 aa14.01□□□□□ -0.17
GABRE-210ENST00000489333 MAPK8IP2Q13387 824 aaPredicted RBP14□□□□□ -0.17
GABRE-210ENST00000489333 OSCARQ8IYS5 282 aa13.98□□□□□ -0.17
GABRE-210ENST00000489333 TOPBP1Q92547 1522 aa13.95□□□□□ -0.18
GABRE-210ENST00000489333 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
GABRE-210ENST00000489333 IFT140Q96RY7 1462 aa13.94□□□□□ -0.18
GABRE-210ENST00000489333 ZNF608Q9ULD9 1512 aaPredicted RBP13.94□□□□□ -0.18
GABRE-210ENST00000489333 POTEDQ86YR6 584 aa13.92□□□□□ -0.18
GABRE-210ENST00000489333 DNMBPQ6XZF7 1577 aa13.9□□□□□ -0.18
GABRE-210ENST00000489333 EIF4G3O43432 1585 aaKnown RBP13.89□□□□□ -0.19
GABRE-210ENST00000489333 ABCC8Q09428 1581 aa13.88□□□□□ -0.19
GABRE-210ENST00000489333 RIMBP3CA6NJZ7 1639 aa13.87□□□□□ -0.19
GABRE-210ENST00000489333 RIMBP3BA6NNM3 1639 aa13.87□□□□□ -0.19
GABRE-210ENST00000489333 RIMBP3Q9UFD9 1639 aa13.87□□□□□ -0.19
GABRE-210ENST00000489333 HRCP23327 699 aa13.84□□□□□ -0.19
GABRE-210ENST00000489333 CHD1O14646 1710 aa13.84□□□□□ -0.19
GABRE-210ENST00000489333 TARBP1Q13395 1621 aaKnown RBP13.82□□□□□ -0.2
GABRE-210ENST00000489333 DMRT2Q9Y5R5 561 aa13.81□□□□□ -0.2
GABRE-210ENST00000489333 AQRO60306 1485 aaKnown RBP eCLIP13.8□□□□□ -0.2
GABRE-210ENST00000489333 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
GABRE-210ENST00000489333 ARHGEF11O15085 1522 aa13.8□□□□□ -0.2
GABRE-210ENST00000489333 RAD54L2Q9Y4B4 1467 aa13.76□□□□□ -0.21
GABRE-210ENST00000489333 FBLN2P98095 1184 aa13.75□□□□□ -0.21
GABRE-210ENST00000489333 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
GABRE-210ENST00000489333 FGD5Q6ZNL6 1462 aa13.72□□□□□ -0.21
GABRE-210ENST00000489333 SOGA1O94964 1423 aa13.72□□□□□ -0.21
GABRE-210ENST00000489333 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.22
GABRE-210ENST00000489333 CYB5RLQ6IPT4 315 aa13.69□□□□□ -0.22
GABRE-210ENST00000489333 CUX1P39880 1505 aa13.69□□□□□ -0.22
GABRE-210ENST00000489333 PCGF6Q9BYE7 350 aa13.68□□□□□ -0.22
GABRE-210ENST00000489333 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
GABRE-210ENST00000489333 WDR97A6NE52 1622 aa13.67□□□□□ -0.22
GABRE-210ENST00000489333 CNKSR2Q8WXI2 1034 aa13.65□□□□□ -0.22
GABRE-210ENST00000489333 ARAP1Q96P48 1450 aa13.65□□□□□ -0.22
GABRE-210ENST00000489333 PBRM1Q86U86 1689 aa13.64□□□□□ -0.23
GABRE-210ENST00000489333 LOC105371045A0A1W2PR82 267 aa13.64□□□□□ -0.23
GABRE-210ENST00000489333 ZEB1P37275 1124 aaPredicted RBP13.64□□□□□ -0.23
GABRE-210ENST00000489333 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
GABRE-210ENST00000489333 SYNJ1O43426 1573 aa13.61□□□□□ -0.23
GABRE-210ENST00000489333 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
GABRE-210ENST00000489333 MAGI1Q96QZ7 1491 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms