RNA–Protein interactions for RNA: ENST00000460547.6

YIPF3-205, Transcript of Yip1 domain family member 3, humanhuman

TSL 1 (best)

Gene YIPF3, Length 1,674 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-205ENST00000460547 NISCHQ9Y2I1 1504 aa37.89■■■■□ 3.66
YIPF3-205ENST00000460547 CCDC180Q9P1Z9 1646 aa33.64■■■□□ 2.98
YIPF3-205ENST00000460547 ABCC9O60706 1549 aa33.16■■■□□ 2.9
YIPF3-205ENST00000460547 DCAF8L2P0C7V8 631 aa31.94■■■□□ 2.7
YIPF3-205ENST00000460547 RB1CC1Q8TDY2 1594 aa31.8■■■□□ 2.68
YIPF3-205ENST00000460547 NACADO15069 1562 aa31.73■■■□□ 2.67
YIPF3-205ENST00000460547 ZCCHC6Q5VYS8 1495 aaKnown RBP31.5■■■□□ 2.63
YIPF3-205ENST00000460547 MYO15BQ96JP2 1530 aa31.48■■■□□ 2.63
YIPF3-205ENST00000460547 DCAF1Q9Y4B6 1507 aa31.3■■■□□ 2.6
YIPF3-205ENST00000460547 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
YIPF3-205ENST00000460547 UNC13AQ9UPW8 1703 aa30.94■■■□□ 2.54
YIPF3-205ENST00000460547 BICRAQ9NZM4 1560 aa30.78■■■□□ 2.52
YIPF3-205ENST00000460547 SCRIBQ14160 1630 aa30.75■■■□□ 2.51
YIPF3-205ENST00000460547 SHROOM4Q9ULL8 1493 aa30.56■■■□□ 2.48
YIPF3-205ENST00000460547 DNAJC5BQ9UF47 199 aa30.55■■■□□ 2.48
YIPF3-205ENST00000460547 EIF4G1Q04637 1599 aaKnown RBP30.02■■■□□ 2.4
YIPF3-205ENST00000460547 CC2D2AQ9P2K1 1620 aa29.93■■■□□ 2.38
YIPF3-205ENST00000460547 CECR2Q9BXF3 1484 aa29.81■■■□□ 2.36
YIPF3-205ENST00000460547 SUPT5HO00267 1087 aaKnown RBP29.62■■■□□ 2.33
YIPF3-205ENST00000460547 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
YIPF3-205ENST00000460547 BAZ1AQ9NRL2 1556 aaPredicted RBP29.37■■■□□ 2.29
YIPF3-205ENST00000460547 NCAPD3P42695 1498 aa29.31■■■□□ 2.28
YIPF3-205ENST00000460547 ATAD2BQ9ULI0 1458 aa29.31■■■□□ 2.28
YIPF3-205ENST00000460547 SMARCA2P51531 1590 aa29.26■■■□□ 2.27
YIPF3-205ENST00000460547 MROH2BQ7Z745 1585 aa29.19■■■□□ 2.26
YIPF3-205ENST00000460547 HMGXB3Q12766 1538 aa29.1■■■□□ 2.25
YIPF3-205ENST00000460547 BAZ1BQ9UIG0 1483 aaKnown RBP29.08■■■□□ 2.25
YIPF3-205ENST00000460547 PEG3Q9GZU2 1588 aa29.07■■■□□ 2.24
YIPF3-205ENST00000460547 RSF1Q96T23 1441 aaPredicted RBP29.04■■■□□ 2.24
YIPF3-205ENST00000460547 WIZO95785 1651 aa28.85■■■□□ 2.21
YIPF3-205ENST00000460547 CHIC1Q5VXU3 224 aa28.69■■■□□ 2.18
YIPF3-205ENST00000460547 NESP48681 1621 aa28.63■■■□□ 2.17
YIPF3-205ENST00000460547 ERCC6Q03468 1493 aa28.63■■■□□ 2.17
YIPF3-205ENST00000460547 TOP2AP11388 1531 aaKnown RBP28.54■■■□□ 2.16
YIPF3-205ENST00000460547 LAMC3Q9Y6N6 1575 aa28.52■■■□□ 2.16
YIPF3-205ENST00000460547 CADPSQ9ULU8 1353 aa28.49■■■□□ 2.15
YIPF3-205ENST00000460547 PDS5BQ9NTI5 1447 aa28.43■■■□□ 2.14
YIPF3-205ENST00000460547 CUX2O14529 1486 aa28.3■■■□□ 2.12
YIPF3-205ENST00000460547 CFTRP13569 1480 aa28.26■■■□□ 2.11
YIPF3-205ENST00000460547 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
YIPF3-205ENST00000460547 KIF21AQ7Z4S6 1674 aa28.21■■■□□ 2.11
YIPF3-205ENST00000460547 THOC2Q8NI27 1593 aaKnown RBP28.14■■■□□ 2.09
YIPF3-205ENST00000460547 FANCD2Q9BXW9 1451 aa28.14■■■□□ 2.09
YIPF3-205ENST00000460547 CEP164Q9UPV0 1460 aa28.11■■■□□ 2.09
YIPF3-205ENST00000460547 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
YIPF3-205ENST00000460547 WDR62O43379 1518 aa27.94■■■□□ 2.06
YIPF3-205ENST00000460547 PRDM2Q13029 1718 aa27.88■■■□□ 2.05
YIPF3-205ENST00000460547 TRIM41Q8WV44 630 aa27.85■■■□□ 2.05
YIPF3-205ENST00000460547 URB2Q14146 1524 aaKnown RBP27.82■■■□□ 2.04
YIPF3-205ENST00000460547 ABCC8Q09428 1581 aa27.69■■■□□ 2.02
YIPF3-205ENST00000460547 TOPBP1Q92547 1522 aa27.65■■■□□ 2.02
YIPF3-205ENST00000460547 DNAJC5Q9H3Z4 198 aa27.65■■■□□ 2.02
YIPF3-205ENST00000460547 DNMBPQ6XZF7 1577 aa27.59■■■□□ 2.01
YIPF3-205ENST00000460547 LOC105371045A0A1W2PR82 267 aa27.54■■■□□ 2
YIPF3-205ENST00000460547 IFT140Q96RY7 1462 aa27.53■■■□□ 2
YIPF3-205ENST00000460547 POLA1P09884 1462 aaPredicted RBP27.41■■□□□ 1.98
YIPF3-205ENST00000460547 ZNF608Q9ULD9 1512 aaPredicted RBP27.39■■□□□ 1.98
YIPF3-205ENST00000460547 CUX1P39880 1505 aa27.38■■□□□ 1.97
YIPF3-205ENST00000460547 SOGA1O94964 1423 aa27.37■■□□□ 1.97
YIPF3-205ENST00000460547 FGD5Q6ZNL6 1462 aa27.33■■□□□ 1.97
YIPF3-205ENST00000460547 RAD54L2Q9Y4B4 1467 aa27.33■■□□□ 1.96
YIPF3-205ENST00000460547 WRNQ14191 1432 aaPredicted RBP eCLIP27.31■■□□□ 1.96
YIPF3-205ENST00000460547 TARBP1Q13395 1621 aaKnown RBP27.3■■□□□ 1.96
YIPF3-205ENST00000460547 FAM9AQ8IZU1 332 aaPredicted RBP27.3■■□□□ 1.96
YIPF3-205ENST00000460547 AQRO60306 1485 aaKnown RBP eCLIP27.27■■□□□ 1.962e-8■■■□□ 18.4
YIPF3-205ENST00000460547 OSCARQ8IYS5 282 aa27.24■■□□□ 1.95
YIPF3-205ENST00000460547 TDRD9Q8NDG6 1382 aaKnown RBP27.24■■□□□ 1.95
YIPF3-205ENST00000460547 EEA1Q15075 1411 aa27.24■■□□□ 1.95
YIPF3-205ENST00000460547 EIF4G3O43432 1585 aaKnown RBP27.22■■□□□ 1.95
YIPF3-205ENST00000460547 SYNJ1O43426 1573 aa27.19■■□□□ 1.94
YIPF3-205ENST00000460547 TOP2BQ02880 1626 aa27.11■■□□□ 1.93
YIPF3-205ENST00000460547 FBLN2P98095 1184 aa27.09■■□□□ 1.93
YIPF3-205ENST00000460547 WDR97A6NE52 1622 aa27.09■■□□□ 1.93
YIPF3-205ENST00000460547 BIVM-ERCC5R4GMW8 1640 aa27.07■■□□□ 1.92
YIPF3-205ENST00000460547 ABCA10Q8WWZ4 1543 aa27.05■■□□□ 1.92
YIPF3-205ENST00000460547 GRIN2BQ13224 1484 aa27.02■■□□□ 1.92
YIPF3-205ENST00000460547 GAPVD1Q14C86 1478 aa27.02■■□□□ 1.92
YIPF3-205ENST00000460547 SNAPC4Q5SXM2 1469 aa26.98■■□□□ 1.91
YIPF3-205ENST00000460547 CHMP7Q8WUX9 453 aaPredicted RBP26.98■■□□□ 1.91
YIPF3-205ENST00000460547 RUSC2Q8N2Y8 1516 aa26.95■■□□□ 1.91
YIPF3-205ENST00000460547 MAGI1Q96QZ7 1491 aaPredicted RBP26.94■■□□□ 1.9
YIPF3-205ENST00000460547 CSRNP3Q8WYN3 585 aa26.93■■□□□ 1.9
YIPF3-205ENST00000460547 ABCA5Q8WWZ7 1642 aa26.89■■□□□ 1.9
YIPF3-205ENST00000460547 CHD1O14646 1710 aa26.88■■□□□ 1.89
YIPF3-205ENST00000460547 SYNJ2O15056 1496 aa26.85■■□□□ 1.89
YIPF3-205ENST00000460547 KIF21BO75037 1637 aa26.85■■□□□ 1.89
YIPF3-205ENST00000460547 TNIKQ9UKE5 1360 aa26.85■■□□□ 1.89
YIPF3-205ENST00000460547 GOLGA3Q08378 1498 aa26.85■■□□□ 1.89
YIPF3-205ENST00000460547 PBRM1Q86U86 1689 aa26.84■■□□□ 1.89
YIPF3-205ENST00000460547 EHMT2Q96KQ7 1210 aa26.82■■□□□ 1.88
YIPF3-205ENST00000460547 PCGF6Q9BYE7 350 aa26.79■■□□□ 1.88
YIPF3-205ENST00000460547 TRIM26Q12899 539 aaPredicted RBP26.74■■□□□ 1.87
YIPF3-205ENST00000460547 CEP162Q5TB80 1403 aa26.73■■□□□ 1.87
YIPF3-205ENST00000460547 ERICH3Q5RHP9 1530 aa26.73■■□□□ 1.87
YIPF3-205ENST00000460547 FHAD1B1AJZ9 1412 aa26.7■■□□□ 1.87
YIPF3-205ENST00000460547 KIF27Q86VH2 1401 aa26.69■■□□□ 1.86
YIPF3-205ENST00000460547 ARHGEF11O15085 1522 aa26.67■■□□□ 1.86
YIPF3-205ENST00000460547 ADAMTS12P58397 1594 aa26.66■■□□□ 1.86
YIPF3-205ENST00000460547 GRIN2AQ12879 1464 aa26.65■■□□□ 1.86
YIPF3-205ENST00000460547 RIMBP3CA6NJZ7 1639 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms