RNA–Protein interactions for RNA: ENST00000447079.4

CDK12-202, Transcript of cyclin dependent kinase 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDK12, Length 8,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK12-202ENST00000447079 NISCHQ9Y2I1 1504 aa12.38□□□□□ -0.43
CDK12-202ENST00000447079 DCAF8L2P0C7V8 631 aa12.08□□□□□ -0.48
CDK12-202ENST00000447079 SUPT5HO00267 1087 aaKnown RBP11.4□□□□□ -0.58
CDK12-202ENST00000447079 SHROOM4Q9ULL8 1493 aa11.3□□□□□ -0.6
CDK12-202ENST00000447079 FAM9AQ8IZU1 332 aaPredicted RBP11.14□□□□□ -0.63
CDK12-202ENST00000447079 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
CDK12-202ENST00000447079 MYT1Q01538 1121 aa11.07□□□□□ -0.64
CDK12-202ENST00000447079 APLP2Q06481 763 aa11.06□□□□□ -0.64
CDK12-202ENST00000447079 EHMT2Q96KQ7 1210 aa10.76□□□□□ -0.69
CDK12-202ENST00000447079 TRIM41Q8WV44 630 aa10.76□□□□□ -0.69
CDK12-202ENST00000447079 ZEB1P37275 1124 aaPredicted RBP10.69□□□□□ -0.7
CDK12-202ENST00000447079 CCDC180Q9P1Z9 1646 aa10.68□□□□□ -0.7
CDK12-202ENST00000447079 CENPBP07199 599 aaPredicted RBP10.66□□□□□ -0.7
CDK12-202ENST00000447079 UBTFP17480 764 aaKnown RBP10.59□□□□□ -0.71
CDK12-202ENST00000447079 ERICH6Q7L0X2 663 aa10.57□□□□□ -0.72
CDK12-202ENST00000447079 CCER1Q8TC90 406 aaPredicted RBP10.56□□□□□ -0.72
CDK12-202ENST00000447079 ATP1B4Q9UN42 357 aaPredicted RBP10.51□□□□□ -0.73
CDK12-202ENST00000447079 PCGF6Q9BYE7 350 aa10.5□□□□□ -0.73
CDK12-202ENST00000447079 ABCC9O60706 1549 aa10.46□□□□□ -0.73
CDK12-202ENST00000447079 RANGAP1P46060 587 aaPredicted RBP10.45□□□□□ -0.74
CDK12-202ENST00000447079 TTBK1Q5TCY1 1321 aaPredicted RBP10.43□□□□□ -0.74
CDK12-202ENST00000447079 TRIM26Q12899 539 aaPredicted RBP10.33□□□□□ -0.76
CDK12-202ENST00000447079 NEFLP07196 543 aa10.27□□□□□ -0.77
CDK12-202ENST00000447079 ZCCHC6Q5VYS8 1495 aaKnown RBP10.27□□□□□ -0.77
CDK12-202ENST00000447079 SCRIBQ14160 1630 aa10.26□□□□□ -0.77
CDK12-202ENST00000447079 RB1CC1Q8TDY2 1594 aa10.23□□□□□ -0.77
CDK12-202ENST00000447079 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.23□□□□□ -0.77
CDK12-202ENST00000447079 HNRNPUL2Q1KMD3 747 aaKnown RBP10.23□□□□□ -0.77
CDK12-202ENST00000447079 HRCP23327 699 aa10.23□□□□□ -0.77
CDK12-202ENST00000447079 CHIC1Q5VXU3 224 aa10.21□□□□□ -0.78
CDK12-202ENST00000447079 MYT1LQ9UL68 1186 aa10.19□□□□□ -0.78
CDK12-202ENST00000447079 PABPN1Q86U42 306 aaKnown RBP eCLIP10.16□□□□□ -0.78
CDK12-202ENST00000447079 NACADO15069 1562 aa10.16□□□□□ -0.78
CDK12-202ENST00000447079 YTHDC1Q96MU7 727 aaKnown RBP10.14□□□□□ -0.79
CDK12-202ENST00000447079 ITGAEP38570 1179 aa10.06□□□□□ -0.8
CDK12-202ENST00000447079 PPARGC1BQ86YN6 1023 aaKnown RBP10.04□□□□□ -0.8
CDK12-202ENST00000447079 LOC105371045A0A1W2PR82 267 aa10.02□□□□□ -0.8
CDK12-202ENST00000447079 FAM50AQ14320 339 aaKnown RBP9.98□□□□□ -0.81
CDK12-202ENST00000447079 DCAF1Q9Y4B6 1507 aa9.98□□□□□ -0.81
CDK12-202ENST00000447079 DAXXQ9UER7 740 aaPredicted RBP9.97□□□□□ -0.81
CDK12-202ENST00000447079 RTL5Q5HYW3 569 aaPredicted RBP9.94□□□□□ -0.82
CDK12-202ENST00000447079 CDK11AQ9UQ88 783 aaPredicted RBP9.94□□□□□ -0.82
CDK12-202ENST00000447079 POLR3GLQ9BT43 218 aa9.94□□□□□ -0.82
CDK12-202ENST00000447079 TRIM52Q96A61 297 aa9.91□□□□□ -0.82
CDK12-202ENST00000447079 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.83
CDK12-202ENST00000447079 FBLN2P98095 1184 aa9.89□□□□□ -0.83
CDK12-202ENST00000447079 SLC4A1APQ9BWU0 796 aaKnown RBP9.86□□□□□ -0.83
CDK12-202ENST00000447079 BAZ1AQ9NRL2 1556 aaPredicted RBP9.86□□□□□ -0.83
CDK12-202ENST00000447079 EEA1Q15075 1411 aa9.85□□□□□ -0.83
CDK12-202ENST00000447079 BAZ1BQ9UIG0 1483 aaKnown RBP9.83□□□□□ -0.84
CDK12-202ENST00000447079 DIEXFQ68CQ4 756 aaKnown RBP9.83□□□□□ -0.84
CDK12-202ENST00000447079 ACIN1Q9UKV3 1341 aaKnown RBP9.82□□□□□ -0.84
CDK12-202ENST00000447079 GTF3C3Q9Y5Q9 886 aa9.81□□□□□ -0.84
CDK12-202ENST00000447079 ANP32CO43423 234 aa9.78□□□□□ -0.84
CDK12-202ENST00000447079 NEUROD1Q13562 356 aa9.76□□□□□ -0.85
CDK12-202ENST00000447079 NPM1P06748 294 aaKnown RBP eCLIP9.75□□□□□ -0.85
CDK12-202ENST00000447079 MYO15BQ96JP2 1530 aa9.75□□□□□ -0.85
CDK12-202ENST00000447079 NEFMP07197 916 aa9.74□□□□□ -0.85
CDK12-202ENST00000447079 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
CDK12-202ENST00000447079 SMARCA2P51531 1590 aa9.73□□□□□ -0.85
CDK12-202ENST00000447079 GOLGA3Q08378 1498 aa9.72□□□□□ -0.85
CDK12-202ENST00000447079 ESF1Q9H501 851 aaKnown RBP9.72□□□□□ -0.85
CDK12-202ENST00000447079 RSF1Q96T23 1441 aaPredicted RBP9.7□□□□□ -0.86
CDK12-202ENST00000447079 CLSPNQ9HAW4 1339 aa9.7□□□□□ -0.86
CDK12-202ENST00000447079 ZBTB47Q9UFB7 747 aaPredicted RBP9.69□□□□□ -0.86
CDK12-202ENST00000447079 P3H3Q8IVL6 736 aa9.69□□□□□ -0.86
CDK12-202ENST00000447079 ZNF326Q5BKZ1 582 aaKnown RBP9.68□□□□□ -0.86
CDK12-202ENST00000447079 KIF27Q86VH2 1401 aa9.68□□□□□ -0.86
CDK12-202ENST00000447079 TONSLQ96HA7 1378 aa9.67□□□□□ -0.86
CDK12-202ENST00000447079 WRNQ14191 1432 aaPredicted RBP eCLIP9.66□□□□□ -0.86
CDK12-202ENST00000447079 ZNF777Q9ULD5 760 aaPredicted RBP9.66□□□□□ -0.86
CDK12-202ENST00000447079 CEP164Q9UPV0 1460 aa9.66□□□□□ -0.86
CDK12-202ENST00000447079 CLIP1P30622 1438 aa9.66□□□□□ -0.86
CDK12-202ENST00000447079 CNGB1Q14028 1251 aaPredicted RBP9.66□□□□□ -0.86
CDK12-202ENST00000447079 CHMP7Q8WUX9 453 aaPredicted RBP9.66□□□□□ -0.86
CDK12-202ENST00000447079 MTUS2Q5JR59 1369 aa9.66□□□□□ -0.86
CDK12-202ENST00000447079 BCANQ96GW7 911 aa9.65□□□□□ -0.86
CDK12-202ENST00000447079 GLIPR1L2Q4G1C9 344 aa9.65□□□□□ -0.86
CDK12-202ENST00000447079 ERCC6Q03468 1493 aa9.64□□□□□ -0.87
CDK12-202ENST00000447079 TSPY4P0CV99 314 aa9.6□□□□□ -0.87
CDK12-202ENST00000447079 TSPY10P0CW01 314 aa9.6□□□□□ -0.87
CDK12-202ENST00000447079 STAG3Q9UJ98 1225 aa9.6□□□□□ -0.87
CDK12-202ENST00000447079 CANXP27824 592 aaKnown RBP9.6□□□□□ -0.87
CDK12-202ENST00000447079 ARID3CA6NKF2 412 aa9.58□□□□□ -0.88
CDK12-202ENST00000447079 FHAD1B1AJZ9 1412 aa9.57□□□□□ -0.88
CDK12-202ENST00000447079 EIF5BO60841 1220 aaKnown RBP9.56□□□□□ -0.88
CDK12-202ENST00000447079 CEP162Q5TB80 1403 aa9.55□□□□□ -0.88
CDK12-202ENST00000447079 TOP2AP11388 1531 aaKnown RBP9.55□□□□□ -0.88
CDK12-202ENST00000447079 TNIKQ9UKE5 1360 aa9.53□□□□□ -0.88
CDK12-202ENST00000447079 ANP32AP39687 249 aaKnown RBP9.53□□□□□ -0.88
CDK12-202ENST00000447079 SMARCA4P51532 1647 aa9.51□□□□□ -0.89
CDK12-202ENST00000447079 PLEKHD1A6NEE1 506 aa9.51□□□□□ -0.89
CDK12-202ENST00000447079 PDS5BQ9NTI5 1447 aa9.5□□□□□ -0.89
CDK12-202ENST00000447079 WIZO95785 1651 aa9.5□□□□□ -0.89
CDK12-202ENST00000447079 SLC24A1O60721 1099 aa9.49□□□□□ -0.89
CDK12-202ENST00000447079 CHGAP10645 457 aaKnown RBP9.48□□□□□ -0.89
CDK12-202ENST00000447079 MROH2BQ7Z745 1585 aa9.46□□□□□ -0.9
CDK12-202ENST00000447079 CECR2Q9BXF3 1484 aa9.45□□□□□ -0.9
CDK12-202ENST00000447079 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.45□□□□□ -0.9
CDK12-202ENST00000447079 SCAF1Q9H7N4 1312 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms