RNA–Protein interactions for RNA: ENST00000436949.5

SEMA3A-204, Transcript of semaphorin 3A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SEMA3A, Length 2,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-204ENST00000436949 NISCHQ9Y2I1 1504 aa13.42□□□□□ -0.26
SEMA3A-204ENST00000436949 CCDC180Q9P1Z9 1646 aa12.36□□□□□ -0.43
SEMA3A-204ENST00000436949 ABCC9O60706 1549 aa12.34□□□□□ -0.43
SEMA3A-204ENST00000436949 RB1CC1Q8TDY2 1594 aa11.83□□□□□ -0.52
SEMA3A-204ENST00000436949 DNAJC5BQ9UF47 199 aa11.79□□□□□ -0.52
SEMA3A-204ENST00000436949 SHROOM4Q9ULL8 1493 aa11.73□□□□□ -0.53
SEMA3A-204ENST00000436949 NACADO15069 1562 aa11.71□□□□□ -0.53
SEMA3A-204ENST00000436949 SUPT5HO00267 1087 aaKnown RBP11.58□□□□□ -0.56
SEMA3A-204ENST00000436949 MYO15BQ96JP2 1530 aa11.57□□□□□ -0.56
SEMA3A-204ENST00000436949 UNC13AQ9UPW8 1703 aa11.49□□□□□ -0.57
SEMA3A-204ENST00000436949 BICRAQ9NZM4 1560 aa11.44□□□□□ -0.58
SEMA3A-204ENST00000436949 PABPN1Q86U42 306 aaKnown RBP eCLIP11.3□□□□□ -0.6
SEMA3A-204ENST00000436949 DCAF1Q9Y4B6 1507 aa11.26□□□□□ -0.61
SEMA3A-204ENST00000436949 DCAF8L2P0C7V8 631 aa11.25□□□□□ -0.61
SEMA3A-204ENST00000436949 CC2D2AQ9P2K1 1620 aa11.25□□□□□ -0.61
SEMA3A-204ENST00000436949 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
SEMA3A-204ENST00000436949 CHIC1Q5VXU3 224 aa11.24□□□□□ -0.61
SEMA3A-204ENST00000436949 ZCCHC6Q5VYS8 1495 aaKnown RBP11.24□□□□□ -0.61
SEMA3A-204ENST00000436949 DNAJC5Q9H3Z4 198 aa11.23□□□□□ -0.61
SEMA3A-204ENST00000436949 HRCP23327 699 aa11.2□□□□□ -0.62
SEMA3A-204ENST00000436949 EIF4G1Q04637 1599 aaKnown RBP11.18□□□□□ -0.62
SEMA3A-204ENST00000436949 PCGF6Q9BYE7 350 aa11.17□□□□□ -0.62
SEMA3A-204ENST00000436949 PPARGC1BQ86YN6 1023 aaKnown RBP11.11□□□□□ -0.63
SEMA3A-204ENST00000436949 LOC105371045A0A1W2PR82 267 aa11.04□□□□□ -0.64
SEMA3A-204ENST00000436949 CUX2O14529 1486 aa11.03□□□□□ -0.64
SEMA3A-204ENST00000436949 SCRIBQ14160 1630 aa10.96□□□□□ -0.65
SEMA3A-204ENST00000436949 TRIM26Q12899 539 aaPredicted RBP10.79□□□□□ -0.68
SEMA3A-204ENST00000436949 NCAPD3P42695 1498 aa10.77□□□□□ -0.69
SEMA3A-204ENST00000436949 EHMT2Q96KQ7 1210 aa10.75□□□□□ -0.69
SEMA3A-204ENST00000436949 FAM9AQ8IZU1 332 aaPredicted RBP10.73□□□□□ -0.69
SEMA3A-204ENST00000436949 ERCC6Q03468 1493 aa10.73□□□□□ -0.69
SEMA3A-204ENST00000436949 HMGXB3Q12766 1538 aa10.72□□□□□ -0.69
SEMA3A-204ENST00000436949 TRIM41Q8WV44 630 aa10.68□□□□□ -0.7
SEMA3A-204ENST00000436949 SMARCA2P51531 1590 aa10.66□□□□□ -0.7
SEMA3A-204ENST00000436949 THOC2Q8NI27 1593 aaKnown RBP10.66□□□□□ -0.7
SEMA3A-204ENST00000436949 RSF1Q96T23 1441 aaPredicted RBP10.64□□□□□ -0.71
SEMA3A-204ENST00000436949 ATAD2BQ9ULI0 1458 aa10.62□□□□□ -0.71
SEMA3A-204ENST00000436949 LAMC3Q9Y6N6 1575 aa10.61□□□□□ -0.71
SEMA3A-204ENST00000436949 PEG3Q9GZU2 1588 aa10.57□□□□□ -0.72
SEMA3A-204ENST00000436949 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
SEMA3A-204ENST00000436949 ZEB1P37275 1124 aaPredicted RBP10.54□□□□□ -0.72
SEMA3A-204ENST00000436949 SCAF1Q9H7N4 1312 aaKnown RBP10.51□□□□□ -0.73
SEMA3A-204ENST00000436949 NESP48681 1621 aa10.49□□□□□ -0.73
SEMA3A-204ENST00000436949 PDS5BQ9NTI5 1447 aa10.49□□□□□ -0.73
SEMA3A-204ENST00000436949 BAZ1AQ9NRL2 1556 aaPredicted RBP10.48□□□□□ -0.73
SEMA3A-204ENST00000436949 BAZ1BQ9UIG0 1483 aaKnown RBP10.48□□□□□ -0.73
SEMA3A-204ENST00000436949 KIF21AQ7Z4S6 1674 aa10.46□□□□□ -0.74
SEMA3A-204ENST00000436949 WDR62O43379 1518 aa10.46□□□□□ -0.74
SEMA3A-204ENST00000436949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.45□□□□□ -0.74
SEMA3A-204ENST00000436949 AEBP2Q6ZN18 517 aaPredicted RBP10.43□□□□□ -0.74
SEMA3A-204ENST00000436949 MRC2Q9UBG0 1479 aa10.43□□□□□ -0.74
SEMA3A-204ENST00000436949 TTBK1Q5TCY1 1321 aaPredicted RBP10.43□□□□□ -0.74
SEMA3A-204ENST00000436949 MROH2BQ7Z745 1585 aa10.4□□□□□ -0.74
SEMA3A-204ENST00000436949 CCER1Q8TC90 406 aaPredicted RBP10.38□□□□□ -0.75
SEMA3A-204ENST00000436949 WIZO95785 1651 aa10.35□□□□□ -0.75
SEMA3A-204ENST00000436949 CADPSQ9ULU8 1353 aa10.34□□□□□ -0.75
SEMA3A-204ENST00000436949 NEUROD1Q13562 356 aa10.31□□□□□ -0.76
SEMA3A-204ENST00000436949 PELP1Q8IZL8 1130 aaKnown RBP10.29□□□□□ -0.76
SEMA3A-204ENST00000436949 CEP164Q9UPV0 1460 aa10.28□□□□□ -0.76
SEMA3A-204ENST00000436949 ACIN1Q9UKV3 1341 aaKnown RBP10.28□□□□□ -0.76
SEMA3A-204ENST00000436949 OSCARQ8IYS5 282 aa10.26□□□□□ -0.77
SEMA3A-204ENST00000436949 DIEXFQ68CQ4 756 aaKnown RBP10.25□□□□□ -0.77
SEMA3A-204ENST00000436949 RIMBP3CA6NJZ7 1639 aa10.24□□□□□ -0.77
SEMA3A-204ENST00000436949 RIMBP3BA6NNM3 1639 aa10.24□□□□□ -0.77
SEMA3A-204ENST00000436949 RIMBP3Q9UFD9 1639 aa10.24□□□□□ -0.77
SEMA3A-204ENST00000436949 ABCC8Q09428 1581 aa10.24□□□□□ -0.77
SEMA3A-204ENST00000436949 CCDC88BA6NC98 1476 aa10.23□□□□□ -0.77
SEMA3A-204ENST00000436949 GTF3C3Q9Y5Q9 886 aa10.22□□□□□ -0.77
SEMA3A-204ENST00000436949 FANCD2Q9BXW9 1451 aa10.21□□□□□ -0.78
SEMA3A-204ENST00000436949 SOGA1O94964 1423 aa10.2□□□□□ -0.78
SEMA3A-204ENST00000436949 CFTRP13569 1480 aa10.2□□□□□ -0.78
SEMA3A-204ENST00000436949 PRDM2Q13029 1718 aa10.18□□□□□ -0.78
SEMA3A-204ENST00000436949 CEP162Q5TB80 1403 aa10.18□□□□□ -0.78
SEMA3A-204ENST00000436949 UBTFP17480 764 aaKnown RBP10.17□□□□□ -0.78
SEMA3A-204ENST00000436949 ARHGEF11O15085 1522 aa10.17□□□□□ -0.78
SEMA3A-204ENST00000436949 RUSC2Q8N2Y8 1516 aa10.16□□□□□ -0.78
SEMA3A-204ENST00000436949 URB2Q14146 1524 aaKnown RBP10.15□□□□□ -0.79
SEMA3A-204ENST00000436949 IFT140Q96RY7 1462 aa10.14□□□□□ -0.79
SEMA3A-204ENST00000436949 YTHDC1Q96MU7 727 aaKnown RBP10.14□□□□□ -0.79
SEMA3A-204ENST00000436949 CENPBP07199 599 aaPredicted RBP10.13□□□□□ -0.79
SEMA3A-204ENST00000436949 WRNQ14191 1432 aaPredicted RBP eCLIP10.13□□□□□ -0.79
SEMA3A-204ENST00000436949 CSRNP3Q8WYN3 585 aa10.12□□□□□ -0.79
SEMA3A-204ENST00000436949 HNRNPUL2Q1KMD3 747 aaKnown RBP10.11□□□□□ -0.79
SEMA3A-204ENST00000436949 TNIKQ9UKE5 1360 aa10.1□□□□□ -0.79
SEMA3A-204ENST00000436949 TOP2AP11388 1531 aaKnown RBP10.1□□□□□ -0.79
SEMA3A-204ENST00000436949 ZNF316A6NFI3 1004 aaPredicted RBP10.1□□□□□ -0.79
SEMA3A-204ENST00000436949 RANGAP1P46060 587 aaPredicted RBP10.07□□□□□ -0.8
SEMA3A-204ENST00000436949 WDR97A6NE52 1622 aa10.06□□□□□ -0.8
SEMA3A-204ENST00000436949 MIER1Q8N108 512 aa10.06□□□□□ -0.8
SEMA3A-204ENST00000436949 ARAP1Q96P48 1450 aa10.04□□□□□ -0.8
SEMA3A-204ENST00000436949 EIF4G3O43432 1585 aaKnown RBP10.03□□□□□ -0.8
SEMA3A-204ENST00000436949 CHD1O14646 1710 aa10□□□□□ -0.81
SEMA3A-204ENST00000436949 DNMBPQ6XZF7 1577 aa10□□□□□ -0.81
SEMA3A-204ENST00000436949 GOLGA3Q08378 1498 aa10□□□□□ -0.81
SEMA3A-204ENST00000436949 TOPBP1Q92547 1522 aa10□□□□□ -0.81
SEMA3A-204ENST00000436949 ZNF608Q9ULD9 1512 aaPredicted RBP10□□□□□ -0.81
SEMA3A-204ENST00000436949 TARBP1Q13395 1621 aaKnown RBP9.98□□□□□ -0.81
SEMA3A-204ENST00000436949 EEA1Q15075 1411 aa9.98□□□□□ -0.81
SEMA3A-204ENST00000436949 CLASP1Q7Z460 1538 aa9.97□□□□□ -0.81
SEMA3A-204ENST00000436949 CLIP1P30622 1438 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms