RNA–Protein interactions for RNA: ENST00000409129.2

NIF3L1-203, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 5

Gene NIF3L1, Length 813 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-203ENST00000409129 NISCHQ9Y2I1 1504 aa22.93■■□□□ 1.26
NIF3L1-203ENST00000409129 AEBP2Q6ZN18 517 aaPredicted RBP21.57■■□□□ 1.04
NIF3L1-203ENST00000409129 ABCC9O60706 1549 aa21.49■■□□□ 1.03
NIF3L1-203ENST00000409129 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
NIF3L1-203ENST00000409129 CCDC180Q9P1Z9 1646 aa20.87■□□□□ 0.93
NIF3L1-203ENST00000409129 DNAJC5BQ9UF47 199 aa20.7■□□□□ 0.9
NIF3L1-203ENST00000409129 RB1CC1Q8TDY2 1594 aa20.11■□□□□ 0.81
NIF3L1-203ENST00000409129 UNC13AQ9UPW8 1703 aa19.92■□□□□ 0.78
NIF3L1-203ENST00000409129 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
NIF3L1-203ENST00000409129 NACADO15069 1562 aa19.79■□□□□ 0.76
NIF3L1-203ENST00000409129 BICRAQ9NZM4 1560 aa19.66■□□□□ 0.74
NIF3L1-203ENST00000409129 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.72
NIF3L1-203ENST00000409129 CC2D2AQ9P2K1 1620 aa19.4■□□□□ 0.7
NIF3L1-203ENST00000409129 CECR2Q9BXF3 1484 aa19.36■□□□□ 0.69
NIF3L1-203ENST00000409129 DNAJC5Q9H3Z4 198 aa19.33■□□□□ 0.68
NIF3L1-203ENST00000409129 MYO15BQ96JP2 1530 aa19.24■□□□□ 0.67
NIF3L1-203ENST00000409129 EIF4G1Q04637 1599 aaKnown RBP19.17■□□□□ 0.66
NIF3L1-203ENST00000409129 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
NIF3L1-203ENST00000409129 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
NIF3L1-203ENST00000409129 ZCCHC6Q5VYS8 1495 aaKnown RBP18.98■□□□□ 0.63
NIF3L1-203ENST00000409129 DCAF1Q9Y4B6 1507 aa18.94■□□□□ 0.62
NIF3L1-203ENST00000409129 PHF23Q9BUL5 403 aaPredicted RBP18.72■□□□□ 0.59
NIF3L1-203ENST00000409129 SENP3Q9H4L4 574 aaPredicted RBP18.7■□□□□ 0.58
NIF3L1-203ENST00000409129 CUX2O14529 1486 aa18.65■□□□□ 0.58
NIF3L1-203ENST00000409129 ERCC6Q03468 1493 aa18.52■□□□□ 0.56
NIF3L1-203ENST00000409129 NESP48681 1621 aa18.32■□□□□ 0.52
NIF3L1-203ENST00000409129 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
NIF3L1-203ENST00000409129 THOC2Q8NI27 1593 aaKnown RBP18.27■□□□□ 0.52
NIF3L1-203ENST00000409129 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
NIF3L1-203ENST00000409129 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
NIF3L1-203ENST00000409129 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
NIF3L1-203ENST00000409129 SMARCA2P51531 1590 aa18.13■□□□□ 0.49
NIF3L1-203ENST00000409129 HMGXB3Q12766 1538 aa18.11■□□□□ 0.49
NIF3L1-203ENST00000409129 SMARCA4P51532 1647 aa18.07■□□□□ 0.48
NIF3L1-203ENST00000409129 LAMC3Q9Y6N6 1575 aa17.99■□□□□ 0.47
NIF3L1-203ENST00000409129 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
NIF3L1-203ENST00000409129 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
NIF3L1-203ENST00000409129 PDS5BQ9NTI5 1447 aa17.82■□□□□ 0.44
NIF3L1-203ENST00000409129 PEG3Q9GZU2 1588 aa17.82■□□□□ 0.44
NIF3L1-203ENST00000409129 WDR62O43379 1518 aa17.8■□□□□ 0.44
NIF3L1-203ENST00000409129 MRC2Q9UBG0 1479 aa17.79■□□□□ 0.44
NIF3L1-203ENST00000409129 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
NIF3L1-203ENST00000409129 RIMBP3CA6NJZ7 1639 aa17.69■□□□□ 0.42
NIF3L1-203ENST00000409129 RIMBP3BA6NNM3 1639 aa17.69■□□□□ 0.42
NIF3L1-203ENST00000409129 RIMBP3Q9UFD9 1639 aa17.69■□□□□ 0.42
NIF3L1-203ENST00000409129 CADPSQ9ULU8 1353 aa17.66■□□□□ 0.42
NIF3L1-203ENST00000409129 OSCARQ8IYS5 282 aa17.65■□□□□ 0.42
NIF3L1-203ENST00000409129 CEP164Q9UPV0 1460 aa17.59■□□□□ 0.41
NIF3L1-203ENST00000409129 WIZO95785 1651 aa17.54■□□□□ 0.4
NIF3L1-203ENST00000409129 FANCD2Q9BXW9 1451 aa17.52■□□□□ 0.4
NIF3L1-203ENST00000409129 ARHGEF11O15085 1522 aa17.51■□□□□ 0.39
NIF3L1-203ENST00000409129 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
NIF3L1-203ENST00000409129 ZNF608Q9ULD9 1512 aaPredicted RBP17.37■□□□□ 0.37
NIF3L1-203ENST00000409129 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
NIF3L1-203ENST00000409129 CYB5RLQ6IPT4 315 aa17.36■□□□□ 0.37
NIF3L1-203ENST00000409129 CFTRP13569 1480 aa17.36■□□□□ 0.37
NIF3L1-203ENST00000409129 CHD1O14646 1710 aa17.35■□□□□ 0.37
NIF3L1-203ENST00000409129 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
NIF3L1-203ENST00000409129 FOXD1Q16676 465 aa17.34■□□□□ 0.37
NIF3L1-203ENST00000409129 ARAP1Q96P48 1450 aa17.31■□□□□ 0.36
NIF3L1-203ENST00000409129 RSF1Q96T23 1441 aaPredicted RBP17.31■□□□□ 0.36
NIF3L1-203ENST00000409129 EIF4G3O43432 1585 aaKnown RBP17.28■□□□□ 0.36
NIF3L1-203ENST00000409129 PLPPR3Q6T4P5 718 aa17.23■□□□□ 0.35
NIF3L1-203ENST00000409129 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
NIF3L1-203ENST00000409129 TOP2AP11388 1531 aaKnown RBP17.22■□□□□ 0.35
NIF3L1-203ENST00000409129 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
NIF3L1-203ENST00000409129 AQRO60306 1485 aaKnown RBP eCLIP17.1■□□□□ 0.33
NIF3L1-203ENST00000409129 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
NIF3L1-203ENST00000409129 CCDC88BA6NC98 1476 aa17.06■□□□□ 0.32
NIF3L1-203ENST00000409129 FBLN2P98095 1184 aa17.06■□□□□ 0.32
NIF3L1-203ENST00000409129 DNMBPQ6XZF7 1577 aa17.03■□□□□ 0.32
NIF3L1-203ENST00000409129 CLASP1Q7Z460 1538 aa17.01■□□□□ 0.31
NIF3L1-203ENST00000409129 ABCC8Q09428 1581 aa16.94■□□□□ 0.3
NIF3L1-203ENST00000409129 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
NIF3L1-203ENST00000409129 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
NIF3L1-203ENST00000409129 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
NIF3L1-203ENST00000409129 SYNJ1O43426 1573 aa16.89■□□□□ 0.3
NIF3L1-203ENST00000409129 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
NIF3L1-203ENST00000409129 POTEDQ86YR6 584 aa16.86■□□□□ 0.29
NIF3L1-203ENST00000409129 GAPVD1Q14C86 1478 aa16.82■□□□□ 0.28
NIF3L1-203ENST00000409129 KIF13AQ9H1H9 1805 aa16.81■□□□□ 0.28
NIF3L1-203ENST00000409129 PBRM1Q86U86 1689 aa16.8■□□□□ 0.28
NIF3L1-203ENST00000409129 ERCC6L2Q5T890 1561 aa16.79■□□□□ 0.28
NIF3L1-203ENST00000409129 SOGA1O94964 1423 aa16.79■□□□□ 0.28
NIF3L1-203ENST00000409129 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
NIF3L1-203ENST00000409129 MAGI1Q96QZ7 1491 aaPredicted RBP16.77■□□□□ 0.28
NIF3L1-203ENST00000409129 WDR97A6NE52 1622 aa16.77■□□□□ 0.27
NIF3L1-203ENST00000409129 FGD5Q6ZNL6 1462 aa16.75■□□□□ 0.27
NIF3L1-203ENST00000409129 SYNJ2O15056 1496 aa16.73■□□□□ 0.27
NIF3L1-203ENST00000409129 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
NIF3L1-203ENST00000409129 CUX1P39880 1505 aa16.67■□□□□ 0.26
NIF3L1-203ENST00000409129 ILDR1Q86SU0 546 aaPredicted RBP16.67■□□□□ 0.26
NIF3L1-203ENST00000409129 CEP170Q5SW79 1584 aa16.62■□□□□ 0.25
NIF3L1-203ENST00000409129 ABCA5Q8WWZ7 1642 aa16.6■□□□□ 0.25
NIF3L1-203ENST00000409129 MSH5O43196 834 aa16.59■□□□□ 0.25
NIF3L1-203ENST00000409129 SHROOM2Q13796 1616 aa16.56■□□□□ 0.24
NIF3L1-203ENST00000409129 SUPT5HO00267 1087 aaKnown RBP16.56■□□□□ 0.24
NIF3L1-203ENST00000409129 KDM4FA0A1W2PPD8 638 aa16.54■□□□□ 0.24
NIF3L1-203ENST00000409129 TSPOAP1O95153 1857 aa16.54■□□□□ 0.24
NIF3L1-203ENST00000409129 GRIN2AQ12879 1464 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms