RNA–Protein interactions for RNA: ENST00000406453.3

SLC29A4-203, Transcript of solute carrier family 29 member 4, humanhuman

TSL 1 (best) BASIC

Gene SLC29A4, Length 2,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC29A4-203ENST00000406453 PCBP1Q15365 356 aaKnown RBP eCLIP15.4■□□□□ 0.064e-8■■■■■ 56.8
SLC29A4-203ENST00000406453 RPS11P62280 158 aaKnown RBP eCLIP13.12□□□□□ -0.316e-6■■■■■ 42.4
SLC29A4-203ENST00000406453 GPKOWQ92917 476 aaPredicted RBP eCLIP16.87■□□□□ 0.294e-7■■■■■ 40.8
SLC29A4-203ENST00000406453 RPS3P23396 243 aaKnown RBP eCLIP14.4□□□□□ -0.19e-30■■■■■ 39.7
SLC29A4-203ENST00000406453 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.15■□□□□ 0.021e-7■■■■■ 36.7
SLC29A4-203ENST00000406453 AQRO60306 1485 aaKnown RBP eCLIP22.6■■□□□ 1.215e-7■■■■■ 31.4
SLC29A4-203ENST00000406453 PRPF4O43172 522 aaKnown RBP eCLIP14.91□□□□□ -0.029e-9■■■■□ 26.5
SLC29A4-203ENST00000406453 NKRFO15226 690 aaKnown RBP eCLIP16.39■□□□□ 0.212e-6■■■■□ 24
SLC29A4-203ENST00000406453 SF3A3Q12874 501 aaKnown RBP eCLIP15.11■□□□□ 0.014e-6■■■■□ 22.2
SLC29A4-203ENST00000406453 UPF1Q92900 1129 aaKnown RBP eCLIP16.54■□□□□ 0.241e-6■■■■□ 20.8
SLC29A4-203ENST00000406453 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.23■□□□□ 0.032e-6■■■■□ 20.6
SLC29A4-203ENST00000406453 GTF2F1P35269 517 aaKnown RBP eCLIP16.06■□□□□ 0.163e-6■■■■□ 20
SLC29A4-203ENST00000406453 DDX3XO00571 662 aaKnown RBP eCLIP15.86■□□□□ 0.131e-6■■■■□ 19.6
SLC29A4-203ENST00000406453 EFTUD2Q15029 972 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■■■□□ 18.4
SLC29A4-203ENST00000406453 DKC1O60832 514 aaKnown RBP eCLIP15.9■□□□□ 0.148e-7■■■□□ 17.2
SLC29A4-203ENST00000406453 AKAP1Q92667 903 aaKnown RBP eCLIP12.67□□□□□ -0.385e-6■■■□□ 17
SLC29A4-203ENST00000406453 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.88□□□□□ -0.351e-7■■■□□ 16.5
SLC29A4-203ENST00000406453 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.23■□□□□ 0.038e-8■■■□□ 14.8
SLC29A4-203ENST00000406453 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.61□□□□□ -0.559e-7■■□□□ 14.5
SLC29A4-203ENST00000406453 RBFOX2O43251 390 aaKnown RBP eCLIP11.89□□□□□ -0.517e-7■■□□□ 13.8
SLC29A4-203ENST00000406453 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.24□□□□□ -0.139e-6■■□□□ 11.8
SLC29A4-203ENST00000406453 PCBP2Q15366 365 aaKnown RBP eCLIP14.33□□□□□ -0.125e-7■■□□□ 11.8
SLC29A4-203ENST00000406453 PPIGQ13427 754 aaKnown RBP eCLIP14.71□□□□□ -0.068e-9■□□□□ 9.9
SLC29A4-203ENST00000406453 PABPN1Q86U42 306 aaKnown RBP eCLIP25.21■■□□□ 1.633e-7■□□□□ 9.8
SLC29A4-203ENST00000406453 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.26■□□□□ 0.191e-6■□□□□ 9.1
SLC29A4-203ENST00000406453 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.59■□□□□ 0.097e-7■□□□□ 8.9
Retrieved 26 of 26 RNA–protein pairs in 16.2 ms