RNA–Protein interactions for RNA: ENST00000380747.5

HMGN1-202, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3 BASIC

Gene HMGN1, Length 709 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-202ENST00000380747 AEBP2Q6ZN18 517 aaPredicted RBP23.07■■□□□ 1.28
HMGN1-202ENST00000380747 CHIC1Q5VXU3 224 aa22.87■■□□□ 1.25
HMGN1-202ENST00000380747 NISCHQ9Y2I1 1504 aa22.27■■□□□ 1.16
HMGN1-202ENST00000380747 PHF23Q9BUL5 403 aaPredicted RBP20.18■□□□□ 0.82
HMGN1-202ENST00000380747 ABCC9O60706 1549 aa20.15■□□□□ 0.82
HMGN1-202ENST00000380747 CCDC180Q9P1Z9 1646 aa19.95■□□□□ 0.78
HMGN1-202ENST00000380747 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
HMGN1-202ENST00000380747 DNAJC5BQ9UF47 199 aa19.18■□□□□ 0.66
HMGN1-202ENST00000380747 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
HMGN1-202ENST00000380747 NACADO15069 1562 aa18.95■□□□□ 0.62
HMGN1-202ENST00000380747 PLPPR3Q6T4P5 718 aa18.73■□□□□ 0.59
HMGN1-202ENST00000380747 DCAF8L2P0C7V8 631 aa18.71■□□□□ 0.59
HMGN1-202ENST00000380747 PABPN1Q86U42 306 aaKnown RBP eCLIP18.69■□□□□ 0.58
HMGN1-202ENST00000380747 MYO15BQ96JP2 1530 aa18.67■□□□□ 0.58
HMGN1-202ENST00000380747 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
HMGN1-202ENST00000380747 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
HMGN1-202ENST00000380747 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
HMGN1-202ENST00000380747 SHROOM4Q9ULL8 1493 aa18.41■□□□□ 0.54
HMGN1-202ENST00000380747 DCAF1Q9Y4B6 1507 aa18.39■□□□□ 0.53
HMGN1-202ENST00000380747 CECR2Q9BXF3 1484 aa18.23■□□□□ 0.51
HMGN1-202ENST00000380747 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.51
HMGN1-202ENST00000380747 EIF4G1Q04637 1599 aaKnown RBP18.13■□□□□ 0.49
HMGN1-202ENST00000380747 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
HMGN1-202ENST00000380747 FOXD1Q16676 465 aa18.06■□□□□ 0.48
HMGN1-202ENST00000380747 DNAJC5Q9H3Z4 198 aa17.89■□□□□ 0.45
HMGN1-202ENST00000380747 ADRA2BP18089 450 aa17.71■□□□□ 0.43
HMGN1-202ENST00000380747 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
HMGN1-202ENST00000380747 CUX2O14529 1486 aa17.59■□□□□ 0.41
HMGN1-202ENST00000380747 NCAPD3P42695 1498 aa17.51■□□□□ 0.39
HMGN1-202ENST00000380747 ERCC6Q03468 1493 aa17.44■□□□□ 0.38
HMGN1-202ENST00000380747 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
HMGN1-202ENST00000380747 HMGXB3Q12766 1538 aa17.35■□□□□ 0.37
HMGN1-202ENST00000380747 SMARCA2P51531 1590 aa17.33■□□□□ 0.37
HMGN1-202ENST00000380747 SMARCA4P51532 1647 aa17.27■□□□□ 0.36
HMGN1-202ENST00000380747 BAZ1AQ9NRL2 1556 aaPredicted RBP17.26■□□□□ 0.35
HMGN1-202ENST00000380747 NESP48681 1621 aa17.22■□□□□ 0.35
HMGN1-202ENST00000380747 MROH2BQ7Z745 1585 aa17.18■□□□□ 0.34
HMGN1-202ENST00000380747 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
HMGN1-202ENST00000380747 PEG3Q9GZU2 1588 aa17.17■□□□□ 0.34
HMGN1-202ENST00000380747 THOC2Q8NI27 1593 aaKnown RBP17.15■□□□□ 0.34
HMGN1-202ENST00000380747 LAMC3Q9Y6N6 1575 aa17.14■□□□□ 0.33
HMGN1-202ENST00000380747 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
HMGN1-202ENST00000380747 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
HMGN1-202ENST00000380747 WIZO95785 1651 aa16.98■□□□□ 0.31
HMGN1-202ENST00000380747 KIF21AQ7Z4S6 1674 aa16.98■□□□□ 0.31
HMGN1-202ENST00000380747 RSF1Q96T23 1441 aaPredicted RBP16.98■□□□□ 0.31
HMGN1-202ENST00000380747 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
HMGN1-202ENST00000380747 MRC2Q9UBG0 1479 aa16.91■□□□□ 0.3
HMGN1-202ENST00000380747 WDR62O43379 1518 aa16.89■□□□□ 0.29
HMGN1-202ENST00000380747 TRIM41Q8WV44 630 aa16.86■□□□□ 0.29
HMGN1-202ENST00000380747 TOP2AP11388 1531 aaKnown RBP16.8■□□□□ 0.28
HMGN1-202ENST00000380747 CEP164Q9UPV0 1460 aa16.77■□□□□ 0.28
HMGN1-202ENST00000380747 FANCD2Q9BXW9 1451 aa16.72■□□□□ 0.27
HMGN1-202ENST00000380747 CFTRP13569 1480 aa16.7■□□□□ 0.26
HMGN1-202ENST00000380747 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
HMGN1-202ENST00000380747 SUPT5HO00267 1087 aaKnown RBP16.65■□□□□ 0.26
HMGN1-202ENST00000380747 KCNA4P22459 653 aa16.64■□□□□ 0.25
HMGN1-202ENST00000380747 CCDC88BA6NC98 1476 aa16.62■□□□□ 0.25
HMGN1-202ENST00000380747 URB2Q14146 1524 aaKnown RBP16.6■□□□□ 0.25
HMGN1-202ENST00000380747 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
HMGN1-202ENST00000380747 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
HMGN1-202ENST00000380747 MSH5O43196 834 aa16.47■□□□□ 0.23
HMGN1-202ENST00000380747 RIMBP3CA6NJZ7 1639 aa16.47■□□□□ 0.23
HMGN1-202ENST00000380747 RIMBP3BA6NNM3 1639 aa16.47■□□□□ 0.23
HMGN1-202ENST00000380747 RIMBP3Q9UFD9 1639 aa16.47■□□□□ 0.23
HMGN1-202ENST00000380747 PRDM2Q13029 1718 aa16.43■□□□□ 0.22
HMGN1-202ENST00000380747 ARHGEF11O15085 1522 aa16.42■□□□□ 0.22
HMGN1-202ENST00000380747 ZNF608Q9ULD9 1512 aaPredicted RBP16.41■□□□□ 0.22
HMGN1-202ENST00000380747 TOPBP1Q92547 1522 aa16.37■□□□□ 0.21
HMGN1-202ENST00000380747 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
HMGN1-202ENST00000380747 EIF4G3O43432 1585 aaKnown RBP16.32■□□□□ 0.2
HMGN1-202ENST00000380747 DNMBPQ6XZF7 1577 aa16.29■□□□□ 0.2
HMGN1-202ENST00000380747 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.2
HMGN1-202ENST00000380747 TARBP1Q13395 1621 aaKnown RBP16.25■□□□□ 0.19
HMGN1-202ENST00000380747 ARAP1Q96P48 1450 aa16.24■□□□□ 0.19
HMGN1-202ENST00000380747 AQRO60306 1485 aaKnown RBP eCLIP16.22■□□□□ 0.192e-11■■■■■ 27.4
HMGN1-202ENST00000380747 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
HMGN1-202ENST00000380747 CHD1O14646 1710 aa16.2■□□□□ 0.18
HMGN1-202ENST00000380747 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
HMGN1-202ENST00000380747 TRHP20396 242 aaPredicted RBP16.16■□□□□ 0.18
HMGN1-202ENST00000380747 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
HMGN1-202ENST00000380747 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
HMGN1-202ENST00000380747 FBLN2P98095 1184 aa16.13■□□□□ 0.17
HMGN1-202ENST00000380747 CUX1P39880 1505 aa16.11■□□□□ 0.17
HMGN1-202ENST00000380747 SOGA1O94964 1423 aa16.1■□□□□ 0.17
HMGN1-202ENST00000380747 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
HMGN1-202ENST00000380747 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
HMGN1-202ENST00000380747 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.16
HMGN1-202ENST00000380747 SNAPC4Q5SXM2 1469 aa16.07■□□□□ 0.16
HMGN1-202ENST00000380747 FGD5Q6ZNL6 1462 aa16.07■□□□□ 0.16
HMGN1-202ENST00000380747 MAGI1Q96QZ7 1491 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-202ENST00000380747 POTEDQ86YR6 584 aa16.05■□□□□ 0.16
HMGN1-202ENST00000380747 SYNJ1O43426 1573 aa16.04■□□□□ 0.16
HMGN1-202ENST00000380747 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.16
HMGN1-202ENST00000380747 CHMP7Q8WUX9 453 aaPredicted RBP16.02■□□□□ 0.16
HMGN1-202ENST00000380747 GRIN2BQ13224 1484 aa16.02■□□□□ 0.15
HMGN1-202ENST00000380747 NPM3O75607 178 aaKnown RBP16.01■□□□□ 0.15
HMGN1-202ENST00000380747 SYNJ2O15056 1496 aa16.01■□□□□ 0.15
HMGN1-202ENST00000380747 CNKSR2Q8WXI2 1034 aa16■□□□□ 0.15
HMGN1-202ENST00000380747 MAPK8IP2Q13387 824 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms