RNA–Protein interactions for RNA: ENST00000334348.7

UPK3B-202, Transcript of uroplakin 3B, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene UPK3B, Length 2,373 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-202ENST00000334348 NISCHQ9Y2I1 1504 aa32.13■■■□□ 2.73
UPK3B-202ENST00000334348 CCDC180Q9P1Z9 1646 aa28.16■■■□□ 2.1
UPK3B-202ENST00000334348 ABCC9O60706 1549 aa27.47■■□□□ 1.99
UPK3B-202ENST00000334348 SHROOM4Q9ULL8 1493 aa27.46■■□□□ 1.99
UPK3B-202ENST00000334348 HRCP23327 699 aa27.36■■□□□ 1.97
UPK3B-202ENST00000334348 SUPT5HO00267 1087 aaKnown RBP27.29■■□□□ 1.96
UPK3B-202ENST00000334348 DCAF8L2P0C7V8 631 aa27.01■■□□□ 1.91
UPK3B-202ENST00000334348 MYO15BQ96JP2 1530 aa26.98■■□□□ 1.91
UPK3B-202ENST00000334348 ZCCHC6Q5VYS8 1495 aaKnown RBP26.94■■□□□ 1.9
UPK3B-202ENST00000334348 CHIC1Q5VXU3 224 aa26.93■■□□□ 1.9
UPK3B-202ENST00000334348 PCGF6Q9BYE7 350 aa26.8■■□□□ 1.88
UPK3B-202ENST00000334348 PPARGC1BQ86YN6 1023 aaKnown RBP26.61■■□□□ 1.85
UPK3B-202ENST00000334348 DCAF1Q9Y4B6 1507 aa26.53■■□□□ 1.84
UPK3B-202ENST00000334348 NACADO15069 1562 aa26.41■■□□□ 1.82
UPK3B-202ENST00000334348 RB1CC1Q8TDY2 1594 aa26.36■■□□□ 1.81
UPK3B-202ENST00000334348 TRIM26Q12899 539 aaPredicted RBP26.17■■□□□ 1.78
UPK3B-202ENST00000334348 LOC105371045A0A1W2PR82 267 aa26.14■■□□□ 1.77
UPK3B-202ENST00000334348 PELP1Q8IZL8 1130 aaKnown RBP26.1■■□□□ 1.77
UPK3B-202ENST00000334348 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
UPK3B-202ENST00000334348 ZEB1P37275 1124 aaPredicted RBP25.95■■□□□ 1.74
UPK3B-202ENST00000334348 UNC13AQ9UPW8 1703 aa25.91■■□□□ 1.74
UPK3B-202ENST00000334348 PABPN1Q86U42 306 aaKnown RBP eCLIP25.88■■□□□ 1.73
UPK3B-202ENST00000334348 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
UPK3B-202ENST00000334348 SCAF1Q9H7N4 1312 aaKnown RBP25.65■■□□□ 1.7
UPK3B-202ENST00000334348 TRIM41Q8WV44 630 aa25.38■■□□□ 1.65
UPK3B-202ENST00000334348 RSF1Q96T23 1441 aaPredicted RBP25.32■■□□□ 1.64
UPK3B-202ENST00000334348 ACIN1Q9UKV3 1341 aaKnown RBP25.18■■□□□ 1.62
UPK3B-202ENST00000334348 FAM9AQ8IZU1 332 aaPredicted RBP25.18■■□□□ 1.62
UPK3B-202ENST00000334348 CECR2Q9BXF3 1484 aa25.16■■□□□ 1.62
UPK3B-202ENST00000334348 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
UPK3B-202ENST00000334348 MYT1Q01538 1121 aa25.04■■□□□ 1.6
UPK3B-202ENST00000334348 DNAJC5BQ9UF47 199 aa24.95■■□□□ 1.59
UPK3B-202ENST00000334348 EIF4G1Q04637 1599 aaKnown RBP24.95■■□□□ 1.58
UPK3B-202ENST00000334348 CCER1Q8TC90 406 aaPredicted RBP24.93■■□□□ 1.58
UPK3B-202ENST00000334348 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.93■■□□□ 1.58
UPK3B-202ENST00000334348 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
UPK3B-202ENST00000334348 EHMT2Q96KQ7 1210 aa24.91■■□□□ 1.58
UPK3B-202ENST00000334348 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
UPK3B-202ENST00000334348 GTF3C3Q9Y5Q9 886 aa24.88■■□□□ 1.57
UPK3B-202ENST00000334348 DIEXFQ68CQ4 756 aaKnown RBP24.87■■□□□ 1.57
UPK3B-202ENST00000334348 SMARCA4P51532 1647 aa24.82■■□□□ 1.56
UPK3B-202ENST00000334348 BAZ1AQ9NRL2 1556 aaPredicted RBP24.81■■□□□ 1.56
UPK3B-202ENST00000334348 CC2D2AQ9P2K1 1620 aa24.77■■□□□ 1.56
UPK3B-202ENST00000334348 WIZO95785 1651 aa24.65■■□□□ 1.54
UPK3B-202ENST00000334348 WRNQ14191 1432 aaPredicted RBP eCLIP24.62■■□□□ 1.53
UPK3B-202ENST00000334348 ATAD2BQ9ULI0 1458 aa24.6■■□□□ 1.53
UPK3B-202ENST00000334348 ZNF316A6NFI3 1004 aaPredicted RBP24.51■■□□□ 1.51
UPK3B-202ENST00000334348 PEG3Q9GZU2 1588 aa24.47■■□□□ 1.51
UPK3B-202ENST00000334348 SMARCA2P51531 1590 aa24.47■■□□□ 1.51
UPK3B-202ENST00000334348 NCAPD3P42695 1498 aa24.45■■□□□ 1.5
UPK3B-202ENST00000334348 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
UPK3B-202ENST00000334348 CEP162Q5TB80 1403 aa24.4■■□□□ 1.5
UPK3B-202ENST00000334348 TNIKQ9UKE5 1360 aa24.34■■□□□ 1.49
UPK3B-202ENST00000334348 TOP2AP11388 1531 aaKnown RBP24.33■■□□□ 1.48
UPK3B-202ENST00000334348 TTBK1Q5TCY1 1321 aaPredicted RBP24.32■■□□□ 1.48
UPK3B-202ENST00000334348 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
UPK3B-202ENST00000334348 CCDC88BA6NC98 1476 aa24.27■■□□□ 1.48
UPK3B-202ENST00000334348 YTHDC1Q96MU7 727 aaKnown RBP24.27■■□□□ 1.48
UPK3B-202ENST00000334348 MIER1Q8N108 512 aa24.22■■□□□ 1.47
UPK3B-202ENST00000334348 ABCC8Q09428 1581 aa24.21■■□□□ 1.47
UPK3B-202ENST00000334348 EEA1Q15075 1411 aa24.19■■□□□ 1.46
UPK3B-202ENST00000334348 SOGA1O94964 1423 aa24.17■■□□□ 1.46
UPK3B-202ENST00000334348 CSRNP3Q8WYN3 585 aa24.12■■□□□ 1.45
UPK3B-202ENST00000334348 UBTFP17480 764 aaKnown RBP24.07■■□□□ 1.44
UPK3B-202ENST00000334348 GOLGA3Q08378 1498 aa24.04■■□□□ 1.44
UPK3B-202ENST00000334348 RUSC2Q8N2Y8 1516 aa23.99■■□□□ 1.43
UPK3B-202ENST00000334348 CLSPNQ9HAW4 1339 aa23.98■■□□□ 1.43
UPK3B-202ENST00000334348 HNRNPUL2Q1KMD3 747 aaKnown RBP23.96■■□□□ 1.43
UPK3B-202ENST00000334348 NESP48681 1621 aa23.95■■□□□ 1.43
UPK3B-202ENST00000334348 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
UPK3B-202ENST00000334348 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
UPK3B-202ENST00000334348 SUPT16HQ9Y5B9 1047 aaKnown RBP23.8■■□□□ 1.4
UPK3B-202ENST00000334348 CLIP1P30622 1438 aa23.8■■□□□ 1.4
UPK3B-202ENST00000334348 VPS8Q8N3P4 1428 aa23.8■■□□□ 1.4
UPK3B-202ENST00000334348 KIF21BO75037 1637 aa23.79■■□□□ 1.4
UPK3B-202ENST00000334348 CFTRP13569 1480 aa23.75■■□□□ 1.39
UPK3B-202ENST00000334348 APLP2Q06481 763 aa23.71■■□□□ 1.39
UPK3B-202ENST00000334348 LAMC3Q9Y6N6 1575 aa23.67■■□□□ 1.38
UPK3B-202ENST00000334348 DHX57Q6P158 1386 aaKnown RBP23.64■■□□□ 1.38
UPK3B-202ENST00000334348 TSHZ2Q9NRE2 1034 aa23.63■■□□□ 1.37
UPK3B-202ENST00000334348 SYNJ1O43426 1573 aa23.58■■□□□ 1.36
UPK3B-202ENST00000334348 ANP32EQ9BTT0 268 aa23.57■■□□□ 1.36
UPK3B-202ENST00000334348 FANCD2Q9BXW9 1451 aa23.56■■□□□ 1.36
UPK3B-202ENST00000334348 KIF21AQ7Z4S6 1674 aa23.55■■□□□ 1.36
UPK3B-202ENST00000334348 PDS5BQ9NTI5 1447 aa23.55■■□□□ 1.36
UPK3B-202ENST00000334348 ERCC6Q03468 1493 aa23.54■■□□□ 1.36
UPK3B-202ENST00000334348 RAPGEF2Q9Y4G8 1499 aa23.54■■□□□ 1.36
UPK3B-202ENST00000334348 PRDM2Q13029 1718 aa23.47■■□□□ 1.35
UPK3B-202ENST00000334348 CUX2O14529 1486 aa23.38■■□□□ 1.33
UPK3B-202ENST00000334348 RRBP1Q9P2E9 1410 aaKnown RBP23.37■■□□□ 1.33
UPK3B-202ENST00000334348 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
UPK3B-202ENST00000334348 URB2Q14146 1524 aaKnown RBP23.34■■□□□ 1.33
UPK3B-202ENST00000334348 ARAP1Q96P48 1450 aa23.32■■□□□ 1.32
UPK3B-202ENST00000334348 KANK4Q5T7N3 995 aaPredicted RBP23.31■■□□□ 1.32
UPK3B-202ENST00000334348 ERICH3Q5RHP9 1530 aa23.29■■□□□ 1.32
UPK3B-202ENST00000334348 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
UPK3B-202ENST00000334348 THOC2Q8NI27 1593 aaKnown RBP23.29■■□□□ 1.32
UPK3B-202ENST00000334348 CUX1P39880 1505 aa23.28■■□□□ 1.32
UPK3B-202ENST00000334348 KCNH8Q96L42 1107 aa23.26■■□□□ 1.31
UPK3B-202ENST00000334348 BCL11AQ9H165 835 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms