RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CDH26Q8IXH8 852 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 PHC2Q8IXK0 858 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 RAET1EQ8TD07 263 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 NCSTNQ92542 709 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 BCL7BQ9BQE9 202 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 ADI1Q9BV57 179 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 SMPD4Q9NXE4 827 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 KLQ9UEF7 1012 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 DAPK2Q9UIK4 370 aa10.24□□□□□ -0.77
LIG1-220ENST00000601091 MBLAC1A4D2B0 266 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 PTGES3LE9PB15 166 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 SCAMP2O15127 329 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 ULK1O75385 1050 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ZNF682O95780 498 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 OTCP00480 354 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 UROSP10746 265 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 NNMTP40261 264 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 UBE3AQ05086 875 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ELOAQ14241 798 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 TRIP4Q15650 581 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 CCL14Q16627 93 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PGS1Q32NB8 556 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 LUZP2Q86TE4 346 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 DENND1CQ8IV53 801 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 CARFQ8N187 725 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 NAT16Q8N8M0 369 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 LEMD2Q8NC56 503 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 FUBP3Q96I24 572 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG1-220ENST00000601091 FEM1CQ96JP0 617 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 MRGPRX2Q96LB1 330 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PPM1MQ96MI6 270 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ELAC1Q9H777 363 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 ERVMER34-1Q9H9K5 563 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 FBRSL1Q9HCM7 1045 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 DNAJC11Q9NVH1 559 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 SMPD3Q9NY59 655 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 MAGEL2Q9UJ55 1249 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ARL5AQ9Y689 179 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 CROCCQ5TZA2 2017 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 NPEPPSL1A6NEC2 478 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 GLTPD2A6NH11 291 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 HS6ST1O60243 411 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 RB1P06400 928 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 CLEC2LP0C7M8 214 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 TACR2P21452 398 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 DGKAP23743 735 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 LEPRP48357 1165 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 PPP3CCP48454 512 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 IKBKEQ14164 716 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PPP1R3AQ16821 1122 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 AKIRIN2Q53H80 203 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 UBXN11Q5T124 520 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PIM3Q86V86 326 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 CIR1Q86X95 450 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 PLD3Q8IV08 490 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ADHFE1Q8IWW8 467 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 LINC00518Q8N0U6 118 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 OR13C4Q8NGS5 318 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 SUSD3Q96L08 255 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 CNOT6Q9ULM6 557 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 Q9Y3F1 56 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 USP3Q9Y6I4 520 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 A0A0U1RQF3 1178 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 TTC24A2A3L6 582 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 ZNF98A6NK75 572 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ANXA6P08133 673 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 HDCP19113 662 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 IL5RAQ01344 420 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 MS4A2Q01362 244 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PFKPQ01813 784 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 BROXQ5VW32 411 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 FAM219BQ5XKK7 198 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 FBXL22Q6P050 247 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PAQR3Q6TCH7 311 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 ALKAL1Q6UXT8 129 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 GALNT5Q7Z7M9 940 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 LINC01465Q8N7H1 131 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 HM13Q8TCT9 377 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 INTS10Q9NVR2 710 aaKnown RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 SPATA6Q9NWH7 488 aaPredicted RBP10.23□□□□□ -0.77
LIG1-220ENST00000601091 MAT2BQ9NZL9 334 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 PCDHGA1Q9Y5H4 931 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 FOCADQ5VW36 1801 aa10.23□□□□□ -0.77
LIG1-220ENST00000601091 H3BMM5 538 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 AQP9O43315 295 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 SCO1O75880 301 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ALX3O95076 343 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 TBX18O95935 607 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RNF224P0DH78 156 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 GSTM2P28161 218 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 S100A3P33764 101 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RPS9P46781 194 aaKnown RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 ERVK-8P63133 956 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 GNA12Q03113 381 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ITGADQ13349 1161 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 BFSP2Q13515 415 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PLCL1Q15111 1095 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 AARDQ4LEZ3 155 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RANBP10Q6VN20 620 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 SLC24A5Q71RS6 500 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms