RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 PCBP2Q15366 365 aaKnown RBP eCLIP17.25■□□□□ 0.354e-6■■■■□ 22.3
RAB40C-205ENST00000539661 RFTN2Q52LD8 501 aaPredicted RBP17.25■□□□□ 0.35
RAB40C-205ENST00000539661 PIK3R6Q5UE93 754 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 DESI1Q6ICB0 168 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 ZNF683Q8IZ20 524 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 CLIP4Q8N3C7 705 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 SCAMP5Q8TAC9 235 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 RTP3Q9BQQ7 232 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 TM9SF3Q9HD45 589 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 ASB1Q9Y576 335 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 U3KQV3 271 aa17.25■□□□□ 0.35
RAB40C-205ENST00000539661 TRBV5-3A0A0A0MS03 114 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 SNX4O95219 450 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 SEPHS1P49903 392 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DEFA1P59665 94 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DEFA3P59666 94 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 IL2P60568 153 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 PROX2Q3B8N5 592 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DUSP28Q4G0W2 176 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 GALNT5Q7Z7M9 940 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 ELMOD1Q8N336 334 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 OR6J1Q8NGC5 347 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 CDK15Q96Q40 435 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 GAD1Q99259 594 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 SEMA3CQ99985 751 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 TBCDQ9BTW9 1192 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 C1orf109Q9NX04 203 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 TRMT6Q9UJA5 497 aaKnown RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 PNMA8BQ9ULN7 279 aaPredicted RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 MOXD2PA6NHM9 499 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 KRT8P05787 483 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 POLR2EP19388 210 aaKnown RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DAPP51397 102 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 CLCNKBP51801 687 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 NKX2-5P52952 324 aaPredicted RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 FAM174BQ3ZCQ3 159 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 TWF2Q6IBS0 349 aaKnown RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 RNF165Q6ZSG1 346 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 SNX20Q7Z614 316 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 HEATR4Q86WZ0 1026 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 ZDHHC21Q8IVQ6 265 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DNAJB3Q8WWF6 145 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 CCDC59Q9P031 241 aaKnown RBP17.24■□□□□ 0.35
RAB40C-205ENST00000539661 KCNH4Q9UQ05 1017 aa17.24■□□□□ 0.35
RAB40C-205ENST00000539661 DOCK4Q8N1I0 1966 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 AIREO43918 545 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 S100A5P33763 92 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ZNF140P52738 457 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 COPZ1P61923 177 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 FPGSQ05932 587 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 TPRG1LQ5T0D9 272 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 TTC29Q8NA56 475 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 NETO1Q8TDF5 533 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ESAMQ96AP7 390 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ITCHQ96J02 903 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 SNX18Q96RF0 628 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 EMILIN2Q9BXX0 1053 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 VNN3Q9NY84 501 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CACNG4Q9UBN1 327 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CCL27Q9Y4X3 112 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 IDH3BO43837 385 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ERN1O75460 977 aaKnown RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CCNKO75909 580 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 PGRP06401 933 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 SERPINF2P08697 491 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 PRSS56P0CW18 603 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ODC1P11926 461 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 PKMP14618 531 aaKnown RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 SPNP16150 400 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 SMPD1P17405 629 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 GZMMP51124 257 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CRYBB1P53674 252 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CAMK2BQ13554 666 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CARTPTQ16568 116 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 PTPRNQ16849 979 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 AAK1Q2M2I8 961 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 AGAP6Q5VW22 663 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 RSBN1Q5VWQ0 802 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ZNF467Q7Z7K2 595 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 CCDC103Q8IW40 242 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 METTL4Q8N3J2 472 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 DCBLD1Q8N8Z6 715 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 Q8N9G6 341 aaPredicted RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 NUDT8Q8WV74 236 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 TP53INP1Q96A56 240 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 FAM120BQ96EK7 910 aaKnown RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 AGAP4Q96P64 663 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 DPY30Q9C005 99 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 ASIC5Q9NY37 505 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 IL37Q9NZH6 218 aa17.23■□□□□ 0.35
RAB40C-205ENST00000539661 SAMD4AQ9UPU9 718 aaKnown RBP17.23■□□□□ 0.35
RAB40C-205ENST00000539661 RGS14O43566 566 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 SEC22BO75396 215 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 OTCP00480 354 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 S100BP04271 92 aaPredicted RBP17.22■□□□□ 0.35
RAB40C-205ENST00000539661 THP07101 528 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 SLC2A4P14672 509 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 PSMA3P25788 255 aa17.22■□□□□ 0.35
RAB40C-205ENST00000539661 GALNT3Q14435 633 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms