RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH1	YHR120W	RPN12	P32496	274 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	VPS20	Q04272	221 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	SPH1	Q06160	661 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	ESF1	Q06344	628 aa	Known RBP	5.77	□□□□□ -1.49
MSH1	YHR120W	CSC1	Q06538	782 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	MET7	Q08645	548 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	RGT1	P32862	1170 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	SHP1	P34223	423 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	AIM9	P40053	627 aa	Known RBP	5.77	□□□□□ -1.49
MSH1	YHR120W	ALG2	P43636	503 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	VPS62	P53285	467 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	CTR9	P89105	1077 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	MDM1	Q01846	1127 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	ECM23	Q02710	187 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.77	□□□□□ -1.49	not detected
MSH1	YHR120W	YOR111W	Q99210	232 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	SRP40	P32583	406 aa	Predicted RBP	5.77	□□□□□ -1.49
MSH1	YHR120W	RSC1	P53236	928 aa		5.77	□□□□□ -1.49
MSH1	YHR120W	BUL2	Q03758	920 aa	Known RBP	5.77	□□□□□ -1.49
MSH1	YHR120W	DUS3	Q06053	668 aa	Known RBP	5.77	□□□□□ -1.49
MSH1	YHR120W	BIK1	P11709	440 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	NDT80	P38830	627 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	RVS167	P39743	482 aa	Known RBP	5.76	□□□□□ -1.49
MSH1	YHR120W	TGL3	P40308	642 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	SPO22	P40511	975 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	BRE5	P53741	515 aa	Known RBP	5.76	□□□□□ -1.49
MSH1	YHR120W	RNR3	P21672	869 aa	Known RBP	5.76	□□□□□ -1.49
MSH1	YHR120W	ELM1	P32801	640 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	MPE1	P35728	441 aa	Known RBP	5.76	□□□□□ -1.49
MSH1	YHR120W	VPS29	P38759	282 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	LSB1	P53281	241 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	DSE3	Q08729	430 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	YOR131C	Q12486	218 aa		5.76	□□□□□ -1.49
MSH1	YHR120W	MYO1	P08964	1928 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.75	□□□□□ -1.49	not detected
MSH1	YHR120W	TOM71	P38825	639 aa	Known RBP	5.75	□□□□□ -1.49
MSH1	YHR120W	RSM25	P40496	264 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	KRI1	P42846	591 aa	Known RBP	5.75	□□□□□ -1.49
MSH1	YHR120W	GUD1	Q07729	489 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	SUT2	Q12286	268 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	ECM29	P38737	1868 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	MCR1	P36060	302 aa	Known RBP	5.75	□□□□□ -1.49
MSH1	YHR120W	LDH1	P38139	375 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	AFG3	P39925	761 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	SLD5	Q03406	294 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	TFC8	Q12308	588 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	ERP3	Q12403	225 aa		5.75	□□□□□ -1.49
MSH1	YHR120W	BCS1	P32839	456 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	MAL31	P38156	614 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	VID28	P40547	921 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	FMS1	P50264	508 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	TAF13	P11747	167 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	SEC20	P28791	383 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	FBP26	P32604	452 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	AKR1	P39010	764 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	AIM21	P40563	679 aa		5.74	□□□□□ -1.49
MSH1	YHR120W	YGL039W	P53183	348 aa	Known RBP	5.74	□□□□□ -1.49
MSH1	YHR120W	VIP1	Q06685	1146 aa	Known RBP	5.74	□□□□□ -1.49
MSH1	YHR120W	YUR1	P26725	428 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	YJR107W	P47145	328 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	MDM20	Q12387	796 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	RKM4	Q12504	494 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	TKL1	P23254	680 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	DBP7	P36120	742 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	CTR1	P49573	406 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	ASE1	P50275	885 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	SCS3	P53012	380 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	LIF1	P53150	421 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	MSC6	Q08818	692 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	VPS13	Q07878	3144 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	CIT1	P00890	479 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	RPL8A	P17076	256 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	DBP1	P24784	617 aa	Known RBP	5.73	□□□□□ -1.49
MSH1	YHR120W	UGA4	P32837	571 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	SIS2	P36024	562 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	TPM2	P40414	161 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	YMR321C	Q04898	105 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	PEX19	Q07418	342 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	YDR461C-A	Q2V2P7	80 aa		5.73	□□□□□ -1.49
MSH1	YHR120W	MET6	P05694	767 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	UIP5	P36137	443 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	REG2	P38232	338 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	KSP1	P38691	1029 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	YDR341C	Q05506	607 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	YLR326W	Q06170	240 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	ISA1	Q07821	250 aa	Predicted RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	NOP58	Q12499	511 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	MATALPHA2	P0CY08	210 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	HMLALPHA2	P0CY09	210 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	MCM4	P30665	933 aa	Known RBP	5.72	□□□□□ -1.49
MSH1	YHR120W	TFC4	P33339	1025 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	PAN5	P38787	379 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	EPL1	P43572	832 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	ECM30	Q06673	1274 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	MAM3	Q12296	706 aa		5.72	□□□□□ -1.49
MSH1	YHR120W	VPS53	P47061	822 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	PTA1	Q01329	785 aa	Predicted RBP	5.71	□□□□□ -1.5
MSH1	YHR120W	ETT1	Q08421	412 aa	Known RBP	5.71	□□□□□ -1.5
MSH1	YHR120W	RPL19A	P0CX82	189 aa	Known RBP	5.71	□□□□□ -1.5
MSH1	YHR120W	RPL19B	P0CX83	189 aa	Predicted RBP	5.71	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms