RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 NUDCQ9Y266 331 aa17.69■□□□□ 0.42
GTF3A-209ENST00000640289 KDRP35968 1356 aa17.68■□□□□ 0.42
GTF3A-209ENST00000640289 TNS2Q63HR2 1409 aa17.68■□□□□ 0.42
GTF3A-209ENST00000640289 BRWD3Q6RI45 1802 aa17.68■□□□□ 0.42
GTF3A-209ENST00000640289 U2AF1L5P0DN76 240 aaPredicted RBP17.67■□□□□ 0.42
GTF3A-209ENST00000640289 U2AF1Q01081 240 aaKnown RBP eCLIP17.67■□□□□ 0.42
GTF3A-209ENST00000640289 MARCH10Q8NA82 808 aaPredicted RBP17.67■□□□□ 0.42
GTF3A-209ENST00000640289 ZCRB1Q8TBF4 217 aaKnown RBP17.66■□□□□ 0.42
GTF3A-209ENST00000640289 DDX54Q8TDD1 881 aaKnown RBP17.65■□□□□ 0.42
GTF3A-209ENST00000640289 RSPH6AQ9H0K4 717 aa17.63■□□□□ 0.41
GTF3A-209ENST00000640289 CYP27B1O15528 508 aa17.62■□□□□ 0.41
GTF3A-209ENST00000640289 PRKAR2BP31323 418 aa17.62■□□□□ 0.41
GTF3A-209ENST00000640289 SPG7Q9UQ90 795 aa17.62■□□□□ 0.41
GTF3A-209ENST00000640289 PLEKHO1Q53GL0 409 aaPredicted RBP17.61■□□□□ 0.41
GTF3A-209ENST00000640289 MRS2Q9HD23 443 aa17.61■□□□□ 0.41
GTF3A-209ENST00000640289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.61■□□□□ 0.411e-6■■□□□ 11.9
GTF3A-209ENST00000640289 PCDH11XQ9BZA7 1347 aa17.61■□□□□ 0.41
GTF3A-209ENST00000640289 PCDH11YQ9BZA8 1340 aa17.61■□□□□ 0.41
GTF3A-209ENST00000640289 SHANK3Q9BYB0 1731 aa17.61■□□□□ 0.41
GTF3A-209ENST00000640289 FCHSD2O94868 740 aa17.6■□□□□ 0.41
GTF3A-209ENST00000640289 PKD1L3Q7Z443 1732 aa17.6■□□□□ 0.41
GTF3A-209ENST00000640289 PLEKHG2Q9H7P9 1386 aa17.59■□□□□ 0.41
GTF3A-209ENST00000640289 WDR43Q15061 677 aaKnown RBP eCLIP17.59■□□□□ 0.41
GTF3A-209ENST00000640289 AMOTQ4VCS5 1084 aa17.59■□□□□ 0.41
GTF3A-209ENST00000640289 ZNF530Q6P9A1 599 aaPredicted RBP17.59■□□□□ 0.41
GTF3A-209ENST00000640289 FAM196AQ6ZSG2 479 aa17.59■□□□□ 0.41
GTF3A-209ENST00000640289 PHACTR3Q96KR7 559 aa17.59■□□□□ 0.41
GTF3A-209ENST00000640289 PHKG2P15735 406 aa17.58■□□□□ 0.4
GTF3A-209ENST00000640289 MTHFSDQ2M296 383 aaKnown RBP17.58■□□□□ 0.4
GTF3A-209ENST00000640289 ADAMTS8Q9UP79 889 aa17.58■□□□□ 0.4
GTF3A-209ENST00000640289 IFNL2Q8IZJ0 200 aa17.57■□□□□ 0.4
GTF3A-209ENST00000640289 MIER1Q8N108 512 aa17.57■□□□□ 0.4
GTF3A-209ENST00000640289 ACSBG1Q96GR2 724 aa17.57■□□□□ 0.4
GTF3A-209ENST00000640289 PLEKHF1Q96S99 279 aa17.57■□□□□ 0.4
GTF3A-209ENST00000640289 BCL9O00512 1426 aa17.55■□□□□ 0.4
GTF3A-209ENST00000640289 TRIM37O94972 964 aa17.55■□□□□ 0.4
GTF3A-209ENST00000640289 PTF1AQ7RTS3 328 aa17.55■□□□□ 0.4
GTF3A-209ENST00000640289 CCDC146Q8IYE0 955 aa17.55■□□□□ 0.4
GTF3A-209ENST00000640289 PNISRQ8TF01 805 aaKnown RBP17.55■□□□□ 0.4
GTF3A-209ENST00000640289 UPF1Q92900 1129 aaKnown RBP eCLIP17.55■□□□□ 0.4
GTF3A-209ENST00000640289 KCNQ2O43526 872 aa17.54■□□□□ 0.4
GTF3A-209ENST00000640289 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
GTF3A-209ENST00000640289 C1orf141Q5JVX7 400 aa17.54■□□□□ 0.4
GTF3A-209ENST00000640289 AKAP4Q5JQC9 854 aa17.52■□□□□ 0.4
GTF3A-209ENST00000640289 MPRIPQ6WCQ1 1025 aa17.52■□□□□ 0.4
GTF3A-209ENST00000640289 GAS2L2Q8NHY3 880 aa17.52■□□□□ 0.4
GTF3A-209ENST00000640289 CCER2I3L3R5 266 aa17.51■□□□□ 0.39
GTF3A-209ENST00000640289 KDM6AO15550 1401 aaPredicted RBP17.51■□□□□ 0.39
GTF3A-209ENST00000640289 SYTL4Q96C24 671 aaPredicted RBP17.51■□□□□ 0.39
GTF3A-209ENST00000640289 PNNQ9H307 717 aaKnown RBP17.51■□□□□ 0.39
GTF3A-209ENST00000640289 MAPK8IP3Q9UPT6 1336 aa17.5■□□□□ 0.39
GTF3A-209ENST00000640289 NEFMP07197 916 aa17.5■□□□□ 0.39
GTF3A-209ENST00000640289 PRIM1P49642 420 aaKnown RBP17.5■□□□□ 0.39
GTF3A-209ENST00000640289 FAM9BQ8IZU0 186 aa17.5■□□□□ 0.39
GTF3A-209ENST00000640289 SOCS7O14512 581 aa17.49■□□□□ 0.39
GTF3A-209ENST00000640289 HSP90AB1P08238 724 aaKnown RBP17.49■□□□□ 0.39
GTF3A-209ENST00000640289 RUNDC1Q96C34 613 aa17.49■□□□□ 0.39
GTF3A-209ENST00000640289 DCAF5Q96JK2 942 aa17.49■□□□□ 0.39
GTF3A-209ENST00000640289 BCL11BQ9C0K0 894 aaPredicted RBP17.49■□□□□ 0.39
GTF3A-209ENST00000640289 LGR6Q9HBX8 967 aa17.49■□□□□ 0.39
GTF3A-209ENST00000640289 DOT1LQ8TEK3 1739 aa17.48■□□□□ 0.39
GTF3A-209ENST00000640289 TOGARAM1Q9Y4F4 1720 aa17.48■□□□□ 0.39
GTF3A-209ENST00000640289 GNAT3A8MTJ3 354 aa17.48■□□□□ 0.39
GTF3A-209ENST00000640289 MAP3K5Q99683 1374 aa17.48■□□□□ 0.39
GTF3A-209ENST00000640289 RNMTO43148 476 aaKnown RBP17.47■□□□□ 0.39
GTF3A-209ENST00000640289 APBA3O96018 575 aa17.47■□□□□ 0.39
GTF3A-209ENST00000640289 SF3B2Q13435 895 aaKnown RBP17.47■□□□□ 0.39
GTF3A-209ENST00000640289 NFE2L2Q16236 605 aa17.47■□□□□ 0.39
GTF3A-209ENST00000640289 RRP7AQ9Y3A4 280 aaKnown RBP17.47■□□□□ 0.39
GTF3A-209ENST00000640289 NHSQ6T4R5 1651 aa17.46■□□□□ 0.39
GTF3A-209ENST00000640289 SENP3-EIF4A1A0A087X0R7 540 aa17.46■□□□□ 0.39
GTF3A-209ENST00000640289 DEFB132Q7Z7B7 95 aa17.46■□□□□ 0.39
GTF3A-209ENST00000640289 CCDC125Q86Z20 511 aa17.46■□□□□ 0.39
GTF3A-209ENST00000640289 SBF2Q86WG5 1849 aa17.46■□□□□ 0.39
GTF3A-209ENST00000640289 TNS1Q9HBL0 1735 aaKnown RBP17.45■□□□□ 0.38
GTF3A-209ENST00000640289 TMPOP42166 694 aaKnown RBP17.45■□□□□ 0.38
GTF3A-209ENST00000640289 DCTN1Q14203 1278 aa17.45■□□□□ 0.38
GTF3A-209ENST00000640289 IL17REQ8NFR9 667 aa17.45■□□□□ 0.38
GTF3A-209ENST00000640289 PIGBQ92521 554 aa17.45■□□□□ 0.38
GTF3A-209ENST00000640289 EP400Q96L91 3159 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 ERVV-2B6SEH9 535 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 RIPK4P57078 832 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 CABP4P57796 275 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 NEUROD2Q15784 382 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 MCM10Q7L590 875 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 TMOD3Q9NYL9 352 aa17.44■□□□□ 0.38
GTF3A-209ENST00000640289 APAF1O14727 1248 aa17.43■□□□□ 0.38
GTF3A-209ENST00000640289 EN1Q05925 392 aaPredicted RBP17.43■□□□□ 0.38
GTF3A-209ENST00000640289 NFATC2IPQ8NCF5 419 aa17.43■□□□□ 0.38
GTF3A-209ENST00000640289 BAG6P46379 1132 aa17.42■□□□□ 0.38
GTF3A-209ENST00000640289 RTF1Q92541 710 aaKnown RBP17.42■□□□□ 0.38
GTF3A-209ENST00000640289 SLC52A2Q9HAB3 445 aa17.42■□□□□ 0.38
GTF3A-209ENST00000640289 CEMIPQ8WUJ3 1361 aa17.41■□□□□ 0.38
GTF3A-209ENST00000640289 THUMPD2Q9BTF0 503 aaKnown RBP17.41■□□□□ 0.38
GTF3A-209ENST00000640289 ADAMTS7Q9UKP4 1686 aa17.41■□□□□ 0.38
GTF3A-209ENST00000640289 MRC1P22897 1456 aa17.4■□□□□ 0.38
GTF3A-209ENST00000640289 HTATSF1O43719 755 aaKnown RBP17.4■□□□□ 0.38
GTF3A-209ENST00000640289 EZH2Q15910 746 aaKnown RBP17.4■□□□□ 0.38
GTF3A-209ENST00000640289 CAMKK2Q96RR4 588 aa17.4■□□□□ 0.38
GTF3A-209ENST00000640289 BTAF1O14981 1849 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms