RNA–Protein interactions for RNA: ENST00000638794.1

SMN2-216, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 846 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-216ENST00000638794 UTRNP46939 3433 aa23.49■■□□□ 1.35
SMN2-216ENST00000638794 SYTL4Q96C24 671 aaPredicted RBP23.49■■□□□ 1.35
SMN2-216ENST00000638794 CARD14Q9BXL6 1004 aa23.49■■□□□ 1.35
SMN2-216ENST00000638794 MTFR1LQ9H019 292 aa23.49■■□□□ 1.35
SMN2-216ENST00000638794 NSD3Q9BZ95 1437 aa23.49■■□□□ 1.35
SMN2-216ENST00000638794 LY75O60449 1722 aa23.48■■□□□ 1.35
SMN2-216ENST00000638794 HSP90AB2PQ58FF8 381 aa23.48■■□□□ 1.35
SMN2-216ENST00000638794 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
SMN2-216ENST00000638794 CLSPNQ9HAW4 1339 aa23.48■■□□□ 1.35
SMN2-216ENST00000638794 FLT4P35916 1363 aa23.48■■□□□ 1.35
SMN2-216ENST00000638794 PRIM1P49642 420 aaKnown RBP23.47■■□□□ 1.35
SMN2-216ENST00000638794 NSD2O96028 1365 aa23.47■■□□□ 1.35
SMN2-216ENST00000638794 INSRP06213 1382 aa23.47■■□□□ 1.35
SMN2-216ENST00000638794 QSER1Q2KHR3 1735 aa23.47■■□□□ 1.35
SMN2-216ENST00000638794 KIF24Q5T7B8 1368 aa23.46■■□□□ 1.35
SMN2-216ENST00000638794 SGIP1Q9BQI5 828 aa23.46■■□□□ 1.35
SMN2-216ENST00000638794 CGNL1Q0VF96 1302 aa23.45■■□□□ 1.34
SMN2-216ENST00000638794 DCAF8L1A6NGE4 600 aa23.45■■□□□ 1.34
SMN2-216ENST00000638794 SLC27A3Q5K4L6 730 aa23.45■■□□□ 1.34
SMN2-216ENST00000638794 TUBGCP6Q96RT7 1819 aa23.45■■□□□ 1.34
SMN2-216ENST00000638794 RAPGEF4Q8WZA2 1011 aa23.44■■□□□ 1.34
SMN2-216ENST00000638794 AKT1S1Q96B36 256 aa23.44■■□□□ 1.34
SMN2-216ENST00000638794 ANKRD26Q9UPS8 1709 aa23.43■■□□□ 1.34
SMN2-216ENST00000638794 YY1P25490 414 aa23.43■■□□□ 1.34
SMN2-216ENST00000638794 KCNQ4P56696 695 aa23.42■■□□□ 1.34
SMN2-216ENST00000638794 FHDC1Q9C0D6 1143 aaPredicted RBP23.42■■□□□ 1.34
SMN2-216ENST00000638794 EMILIN1Q9Y6C2 1016 aa23.42■■□□□ 1.34
SMN2-216ENST00000638794 TATP17735 454 aaPredicted RBP23.41■■□□□ 1.34
SMN2-216ENST00000638794 SYT17Q9BSW7 474 aa23.4■■□□□ 1.34
SMN2-216ENST00000638794 MAP2P11137 1827 aaKnown RBP23.39■■□□□ 1.33
SMN2-216ENST00000638794 PKD1L3Q7Z443 1732 aa23.38■■□□□ 1.33
SMN2-216ENST00000638794 PNPLA7Q6ZV29 1317 aa23.37■■□□□ 1.33
SMN2-216ENST00000638794 PCDH11XQ9BZA7 1347 aa23.37■■□□□ 1.33
SMN2-216ENST00000638794 PCDH11YQ9BZA8 1340 aa23.37■■□□□ 1.33
SMN2-216ENST00000638794 ARXQ96QS3 562 aa23.37■■□□□ 1.33
SMN2-216ENST00000638794 COL24A1Q17RW2 1714 aa23.36■■□□□ 1.33
SMN2-216ENST00000638794 TOGARAM1Q9Y4F4 1720 aa23.36■■□□□ 1.33
SMN2-216ENST00000638794 PPM1GO15355 546 aaPredicted RBP23.36■■□□□ 1.33
SMN2-216ENST00000638794 TFCP2L1Q9NZI6 479 aa23.36■■□□□ 1.33
SMN2-216ENST00000638794 CCNL1Q9UK58 526 aaPredicted RBP23.36■■□□□ 1.33
SMN2-216ENST00000638794 NCAPD2Q15021 1401 aa23.35■■□□□ 1.33
SMN2-216ENST00000638794 POLR3GLQ9BT43 218 aa23.35■■□□□ 1.33
SMN2-216ENST00000638794 SLC16A10Q8TF71 515 aa23.34■■□□□ 1.33
SMN2-216ENST00000638794 ITGB4P16144 1822 aa23.33■■□□□ 1.33
SMN2-216ENST00000638794 C5P01031 1676 aa23.33■■□□□ 1.33
SMN2-216ENST00000638794 MAP3K5Q99683 1374 aa23.33■■□□□ 1.33
SMN2-216ENST00000638794 CYP27B1O15528 508 aa23.33■■□□□ 1.33
SMN2-216ENST00000638794 WASHC2AQ641Q2 1341 aa23.33■■□□□ 1.32
SMN2-216ENST00000638794 GOLGB1Q14789 3259 aaKnown RBP23.32■■□□□ 1.32
SMN2-216ENST00000638794 TAF1LQ8IZX4 1826 aa23.3■■□□□ 1.32
SMN2-216ENST00000638794 EIF4G2P78344 907 aaKnown RBP eCLIP23.29■■□□□ 1.32
SMN2-216ENST00000638794 MPRIPQ6WCQ1 1025 aa23.29■■□□□ 1.32
SMN2-216ENST00000638794 POLKQ9UBT6 870 aa23.29■■□□□ 1.32
SMN2-216ENST00000638794 PALLDQ8WX93 1383 aa23.28■■□□□ 1.32
SMN2-216ENST00000638794 HSPA5P11021 654 aaKnown RBP23.28■■□□□ 1.32
SMN2-216ENST00000638794 POLD1P28340 1107 aa23.28■■□□□ 1.32
SMN2-216ENST00000638794 EYA1Q99502 592 aa23.28■■□□□ 1.32
SMN2-216ENST00000638794 CHD4Q14839 1912 aa23.26■■□□□ 1.31
SMN2-216ENST00000638794 TNNT2P45379 298 aaPredicted RBP23.26■■□□□ 1.31
SMN2-216ENST00000638794 COL23A1Q86Y22 540 aaPredicted RBP23.25■■□□□ 1.31
SMN2-216ENST00000638794 KLHL34Q8N239 644 aa23.25■■□□□ 1.31
SMN2-216ENST00000638794 SPG7Q9UQ90 795 aa23.25■■□□□ 1.31
SMN2-216ENST00000638794 NKX1-1Q15270 411 aaPredicted RBP23.24■■□□□ 1.31
SMN2-216ENST00000638794 CCER1Q8TC90 406 aaPredicted RBP23.24■■□□□ 1.31
SMN2-216ENST00000638794 MSH5O43196 834 aa23.23■■□□□ 1.31
SMN2-216ENST00000638794 PANK3Q9H999 370 aa23.23■■□□□ 1.31
SMN2-216ENST00000638794 C4BP0C0L5 1744 aa23.22■■□□□ 1.31
SMN2-216ENST00000638794 EIF4A2Q14240 407 aaKnown RBP23.22■■□□□ 1.31
SMN2-216ENST00000638794 PIGBQ92521 554 aa23.21■■□□□ 1.31
SMN2-216ENST00000638794 SMARCC1Q92922 1105 aaPredicted RBP23.21■■□□□ 1.31
SMN2-216ENST00000638794 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.21■■□□□ 1.31
SMN2-216ENST00000638794 UBR3Q6ZT12 1888 aa23.18■■□□□ 1.3
SMN2-216ENST00000638794 HMGB2P26583 209 aaKnown RBP23.18■■□□□ 1.3
SMN2-216ENST00000638794 MSL1Q68DK7 614 aa23.18■■□□□ 1.3
SMN2-216ENST00000638794 PHKG2P15735 406 aa23.17■■□□□ 1.3
SMN2-216ENST00000638794 GPR162Q16538 588 aa23.17■■□□□ 1.3
SMN2-216ENST00000638794 IFNL2Q8IZJ0 200 aa23.17■■□□□ 1.3
SMN2-216ENST00000638794 NLGN2Q8NFZ4 835 aa23.17■■□□□ 1.3
SMN2-216ENST00000638794 IGSF1Q8N6C5 1336 aa23.16■■□□□ 1.3
SMN2-216ENST00000638794 ZNF784Q8NCA9 323 aaPredicted RBP23.16■■□□□ 1.3
SMN2-216ENST00000638794 FLAD1Q8NFF5 587 aa23.16■■□□□ 1.3
SMN2-216ENST00000638794 TMOD3Q9NYL9 352 aa23.16■■□□□ 1.3
SMN2-216ENST00000638794 PLEKHG2Q9H7P9 1386 aa23.15■■□□□ 1.3
SMN2-216ENST00000638794 AK7Q96M32 723 aa23.15■■□□□ 1.3
SMN2-216ENST00000638794 AMIGO3Q86WK7 504 aa23.14■■□□□ 1.29
SMN2-216ENST00000638794 LOC102724428A0A0B4J2F2 783 aa23.13■■□□□ 1.29
SMN2-216ENST00000638794 SIK1P57059 783 aa23.13■■□□□ 1.29
SMN2-216ENST00000638794 PELP1Q8IZL8 1130 aaKnown RBP23.13■■□□□ 1.29
SMN2-216ENST00000638794 ASAP1Q9ULH1 1129 aa23.13■■□□□ 1.29
SMN2-216ENST00000638794 LINC00116Q8NCU8 138 aa23.12■■□□□ 1.29
SMN2-216ENST00000638794 MORC1Q86VD1 984 aa23.11■■□□□ 1.29
SMN2-216ENST00000638794 PHF14O94880 888 aa23.1■■□□□ 1.29
SMN2-216ENST00000638794 SMIM5Q71RC9 77 aa23.1■■□□□ 1.29
SMN2-216ENST00000638794 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.09■■□□□ 1.29
SMN2-216ENST00000638794 ITPK1Q13572 414 aa23.09■■□□□ 1.29
SMN2-216ENST00000638794 ATG3Q9NT62 314 aa23.09■■□□□ 1.29
SMN2-216ENST00000638794 KNSTRNQ9Y448 316 aa23.08■■□□□ 1.29
SMN2-216ENST00000638794 SSFA2P28290 1259 aa23.07■■□□□ 1.28
SMN2-216ENST00000638794 ATP6V1AP38606 617 aa23.07■■□□□ 1.28
SMN2-216ENST00000638794 YBX3P16989 372 aaKnown RBP eCLIP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms