RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 AMPHP49418 695 aa22.08■■□□□ 1.13
PDLIM3-213ENST00000629667 KCNQ4P56696 695 aa22.08■■□□□ 1.13
PDLIM3-213ENST00000629667 SENP3-EIF4A1A0A087X0R7 540 aa22.07■■□□□ 1.12
PDLIM3-213ENST00000629667 HOXC9P31274 260 aa22.07■■□□□ 1.12
PDLIM3-213ENST00000629667 C1QTNF8P60827 252 aa22.07■■□□□ 1.12
PDLIM3-213ENST00000629667 PELP1Q8IZL8 1130 aaKnown RBP22.07■■□□□ 1.12
PDLIM3-213ENST00000629667 TONSLQ96HA7 1378 aa22.07■■□□□ 1.12
PDLIM3-213ENST00000629667 MAP3K19Q56UN5 1328 aa22.06■■□□□ 1.12
PDLIM3-213ENST00000629667 SHANK3Q9BYB0 1731 aa22.06■■□□□ 1.12
PDLIM3-213ENST00000629667 ZCRB1Q8TBF4 217 aaKnown RBP22.06■■□□□ 1.12
PDLIM3-213ENST00000629667 GOLGB1Q14789 3259 aaKnown RBP22.05■■□□□ 1.12
PDLIM3-213ENST00000629667 FBLN1P23142 703 aa22.03■■□□□ 1.12
PDLIM3-213ENST00000629667 CCNL1Q9UK58 526 aaPredicted RBP22.03■■□□□ 1.12
PDLIM3-213ENST00000629667 NSD2O96028 1365 aa22.02■■□□□ 1.12
PDLIM3-213ENST00000629667 MEGF6O75095 1541 aa22.02■■□□□ 1.12
PDLIM3-213ENST00000629667 MSH5O43196 834 aa22.01■■□□□ 1.11
PDLIM3-213ENST00000629667 SLC24A1O60721 1099 aa22.01■■□□□ 1.11
PDLIM3-213ENST00000629667 USP47Q96K76 1375 aa22■■□□□ 1.11
PDLIM3-213ENST00000629667 ST20-MTHFSA0A0A6YYL1 179 aa22■■□□□ 1.11
PDLIM3-213ENST00000629667 NLGN2Q8NFZ4 835 aa22■■□□□ 1.11
PDLIM3-213ENST00000629667 TESK2Q96S53 571 aa22■■□□□ 1.11
PDLIM3-213ENST00000629667 RTL1A6NKG5 1358 aa21.99■■□□□ 1.11
PDLIM3-213ENST00000629667 GIGYF1O75420 1035 aaPredicted RBP21.98■■□□□ 1.11
PDLIM3-213ENST00000629667 CGNL1Q0VF96 1302 aa21.98■■□□□ 1.11
PDLIM3-213ENST00000629667 RRS1Q15050 365 aaKnown RBP21.97■■□□□ 1.11
PDLIM3-213ENST00000629667 NBPF6Q5VWK0 638 aa21.97■■□□□ 1.11
PDLIM3-213ENST00000629667 RAPGEF4Q8WZA2 1011 aa21.97■■□□□ 1.11
PDLIM3-213ENST00000629667 NBPF4Q96M43 638 aa21.97■■□□□ 1.11
PDLIM3-213ENST00000629667 SMG6Q86US8 1419 aaKnown RBP21.97■■□□□ 1.11
PDLIM3-213ENST00000629667 COL23A1Q86Y22 540 aaPredicted RBP21.96■■□□□ 1.11
PDLIM3-213ENST00000629667 USHBP1Q8N6Y0 703 aa21.96■■□□□ 1.11
PDLIM3-213ENST00000629667 C5P01031 1676 aa21.95■■□□□ 1.1
PDLIM3-213ENST00000629667 GRIN3BO60391 1043 aa21.95■■□□□ 1.1
PDLIM3-213ENST00000629667 GGNBP2Q9H3C7 697 aa21.94■■□□□ 1.1
PDLIM3-213ENST00000629667 FYB1O15117 783 aa21.93■■□□□ 1.1
PDLIM3-213ENST00000629667 TATP17735 454 aaPredicted RBP21.93■■□□□ 1.1
PDLIM3-213ENST00000629667 YBX3P16989 372 aaKnown RBP eCLIP21.92■■□□□ 1.1
PDLIM3-213ENST00000629667 HMGB2P26583 209 aaKnown RBP21.92■■□□□ 1.1
PDLIM3-213ENST00000629667 MSL1Q68DK7 614 aa21.92■■□□□ 1.1
PDLIM3-213ENST00000629667 TAF1LQ8IZX4 1826 aa21.92■■□□□ 1.1
PDLIM3-213ENST00000629667 KIF20BQ96Q89 1820 aa21.91■■□□□ 1.1
PDLIM3-213ENST00000629667 PCDH11XQ9BZA7 1347 aa21.9■■□□□ 1.1
PDLIM3-213ENST00000629667 PCDH11YQ9BZA8 1340 aa21.9■■□□□ 1.1
PDLIM3-213ENST00000629667 TMF1P82094 1093 aa21.89■■□□□ 1.09
PDLIM3-213ENST00000629667 MPRIPQ6WCQ1 1025 aa21.89■■□□□ 1.09
PDLIM3-213ENST00000629667 FLAD1Q8NFF5 587 aa21.89■■□□□ 1.09
PDLIM3-213ENST00000629667 INSRP06213 1382 aa21.88■■□□□ 1.09
PDLIM3-213ENST00000629667 PALLDQ8WX93 1383 aa21.88■■□□□ 1.09
PDLIM3-213ENST00000629667 HSP90AB2PQ58FF8 381 aa21.88■■□□□ 1.09
PDLIM3-213ENST00000629667 ITGB4P16144 1822 aa21.87■■□□□ 1.09
PDLIM3-213ENST00000629667 FLT4P35916 1363 aa21.87■■□□□ 1.09
PDLIM3-213ENST00000629667 CD2APQ9Y5K6 639 aa21.86■■□□□ 1.09
PDLIM3-213ENST00000629667 C4BP0C0L5 1744 aa21.85■■□□□ 1.09
PDLIM3-213ENST00000629667 KIF24Q5T7B8 1368 aa21.85■■□□□ 1.09
PDLIM3-213ENST00000629667 TOGARAM1Q9Y4F4 1720 aa21.84■■□□□ 1.09
PDLIM3-213ENST00000629667 CYP27B1O15528 508 aa21.83■■□□□ 1.09
PDLIM3-213ENST00000629667 SMARCC1Q92922 1105 aaPredicted RBP21.83■■□□□ 1.09
PDLIM3-213ENST00000629667 AK7Q96M32 723 aa21.83■■□□□ 1.09
PDLIM3-213ENST00000629667 PKD1L3Q7Z443 1732 aa21.82■■□□□ 1.08
PDLIM3-213ENST00000629667 ATP10DQ9P241 1426 aa21.81■■□□□ 1.08
PDLIM3-213ENST00000629667 CDCA8Q53HL2 280 aa21.81■■□□□ 1.08
PDLIM3-213ENST00000629667 UBR3Q6ZT12 1888 aa21.81■■□□□ 1.08
PDLIM3-213ENST00000629667 PHF14O94880 888 aa21.79■■□□□ 1.08
PDLIM3-213ENST00000629667 GPBP1L1Q9HC44 474 aaPredicted RBP21.78■■□□□ 1.08
PDLIM3-213ENST00000629667 EMILIN1Q9Y6C2 1016 aa21.78■■□□□ 1.08
PDLIM3-213ENST00000629667 NSD3Q9BZ95 1437 aa21.78■■□□□ 1.08
PDLIM3-213ENST00000629667 CEP350Q5VT06 3117 aa21.78■■□□□ 1.08
PDLIM3-213ENST00000629667 PPM1GO15355 546 aaPredicted RBP21.77■■□□□ 1.08
PDLIM3-213ENST00000629667 PIGBQ92521 554 aa21.77■■□□□ 1.08
PDLIM3-213ENST00000629667 SPG7Q9UQ90 795 aa21.77■■□□□ 1.08
PDLIM3-213ENST00000629667 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.76■■□□□ 1.07
PDLIM3-213ENST00000629667 AMIGO3Q86WK7 504 aa21.76■■□□□ 1.07
PDLIM3-213ENST00000629667 MAP2P11137 1827 aaKnown RBP21.76■■□□□ 1.07
PDLIM3-213ENST00000629667 NKX1-1Q15270 411 aaPredicted RBP21.75■■□□□ 1.07
PDLIM3-213ENST00000629667 IGSF1Q8N6C5 1336 aa21.75■■□□□ 1.07
PDLIM3-213ENST00000629667 SSFA2P28290 1259 aa21.74■■□□□ 1.07
PDLIM3-213ENST00000629667 SMIM5Q71RC9 77 aa21.74■■□□□ 1.07
PDLIM3-213ENST00000629667 CARD14Q9BXL6 1004 aa21.74■■□□□ 1.07
PDLIM3-213ENST00000629667 ANKRD26Q9UPS8 1709 aa21.73■■□□□ 1.07
PDLIM3-213ENST00000629667 LOC102724428A0A0B4J2F2 783 aa21.73■■□□□ 1.07
PDLIM3-213ENST00000629667 SIK1P57059 783 aa21.73■■□□□ 1.07
PDLIM3-213ENST00000629667 ZNF526Q8TF50 670 aaPredicted RBP21.73■■□□□ 1.07
PDLIM3-213ENST00000629667 WWC3Q9ULE0 1092 aa21.73■■□□□ 1.07
PDLIM3-213ENST00000629667 NCAPD2Q15021 1401 aa21.72■■□□□ 1.07
PDLIM3-213ENST00000629667 LINC00116Q8NCU8 138 aa21.72■■□□□ 1.07
PDLIM3-213ENST00000629667 TMOD3Q9NYL9 352 aa21.72■■□□□ 1.07
PDLIM3-213ENST00000629667 ADCY9O60503 1353 aa21.72■■□□□ 1.07
PDLIM3-213ENST00000629667 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.7■■□□□ 1.06
PDLIM3-213ENST00000629667 WASHC2AQ641Q2 1341 aa21.7■■□□□ 1.06
PDLIM3-213ENST00000629667 GNPATO15228 680 aa21.69■■□□□ 1.06
PDLIM3-213ENST00000629667 ATP6V1AP38606 617 aa21.69■■□□□ 1.06
PDLIM3-213ENST00000629667 IFFO2Q5TF58 517 aa21.69■■□□□ 1.06
PDLIM3-213ENST00000629667 EYA1Q99502 592 aa21.69■■□□□ 1.06
PDLIM3-213ENST00000629667 ASAP1Q9ULH1 1129 aa21.69■■□□□ 1.06
PDLIM3-213ENST00000629667 IFNL2Q8IZJ0 200 aa21.68■■□□□ 1.06
PDLIM3-213ENST00000629667 ITPK1Q13572 414 aa21.67■■□□□ 1.06
PDLIM3-213ENST00000629667 PHKG2P15735 406 aa21.66■■□□□ 1.06
PDLIM3-213ENST00000629667 HSPA6P17066 643 aa21.66■■□□□ 1.06
PDLIM3-213ENST00000629667 ATG3Q9NT62 314 aa21.64■■□□□ 1.05
PDLIM3-213ENST00000629667 MMP10P09238 476 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms