RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 LAMC1P11047 1609 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 SPATA31A5Q5VU36 1347 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 SPATA31A7Q8IWB4 1347 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 RAB3GAP2Q9H2M9 1393 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 SRPK2P78362 688 aaKnown RBP6.88□□□□□ -1.31
LINC00550-201ENST00000629293 PIP4P2Q8N4L2 257 aa6.88□□□□□ -1.31
LINC00550-201ENST00000629293 PPP1R1BQ9UD71 204 aaPredicted RBP6.88□□□□□ -1.31
LINC00550-201ENST00000629293 NRXN1Q9ULB1 1477 aa6.87□□□□□ -1.31
LINC00550-201ENST00000629293 CDK19Q9BWU1 502 aa6.87□□□□□ -1.31
LINC00550-201ENST00000629293 BRWD3Q6RI45 1802 aa6.87□□□□□ -1.31
LINC00550-201ENST00000629293 TMEM121BQ9BXQ6 578 aaPredicted RBP6.87□□□□□ -1.31
LINC00550-201ENST00000629293 FMN2Q9NZ56 1722 aa6.87□□□□□ -1.31
LINC00550-201ENST00000629293 LARP1Q6PKG0 1096 aaKnown RBP6.86□□□□□ -1.31
LINC00550-201ENST00000629293 DDRGK1Q96HY6 314 aa6.86□□□□□ -1.31
LINC00550-201ENST00000629293 FAM196AQ6ZSG2 479 aa6.86□□□□□ -1.31
LINC00550-201ENST00000629293 PDCD7Q8N8D1 485 aaKnown RBP6.86□□□□□ -1.31
LINC00550-201ENST00000629293 PTGER2P43116 358 aa6.86□□□□□ -1.31
LINC00550-201ENST00000629293 MS4A3Q96HJ5 214 aa6.86□□□□□ -1.31
LINC00550-201ENST00000629293 ACEP12821 1306 aa6.86□□□□□ -1.31
LINC00550-201ENST00000629293 KIF1AQ12756 1690 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 A6NJR5 290 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 SPATA31A1Q5TZJ5 1347 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 MARF1Q9Y4F3 1742 aaKnown RBP6.85□□□□□ -1.31
LINC00550-201ENST00000629293 APBB1O00213 710 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 NBPF8Q3BBV2 869 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 MICALL2Q8IY33 904 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 CLUAP1Q96AJ1 413 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 ARID3AQ99856 593 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 ANKARQ7Z5J8 1434 aa6.85□□□□□ -1.31
LINC00550-201ENST00000629293 EIF3AQ14152 1382 aaKnown RBP6.85□□□□□ -1.31
LINC00550-201ENST00000629293 TTLL13PA6NNM8 815 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 NBPF1Q3BBV0 1214 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 NBPF14Q5TI25 921 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 GOLGB1Q14789 3259 aaKnown RBP6.84□□□□□ -1.31
LINC00550-201ENST00000629293 CLSPNQ9HAW4 1339 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 YY1P25490 414 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 KAT6BQ8WYB5 2073 aa6.84□□□□□ -1.31
LINC00550-201ENST00000629293 TRAK2O60296 914 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 CSB-PGBD3P0DP91 1061 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 PLCH1Q4KWH8 1693 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 TCP11L2Q8N4U5 519 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 CAMKK2Q96RR4 588 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 TOM1L2Q6ZVM7 507 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 IFT172Q9UG01 1749 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 GNPATO15228 680 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 GCP02774 474 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 FLIIQ13045 1269 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 MCM6Q14566 821 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 NLRP13Q86W25 1043 aa6.83□□□□□ -1.32
LINC00550-201ENST00000629293 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.83□□□□□ -1.32
LINC00550-201ENST00000629293 DIEXFQ68CQ4 756 aaKnown RBP6.82□□□□□ -1.32
LINC00550-201ENST00000629293 CCDC82Q8N4S0 544 aa6.82□□□□□ -1.32
LINC00550-201ENST00000629293 CABP1Q9NZU7 370 aa6.82□□□□□ -1.32
LINC00550-201ENST00000629293 KNDC1Q76NI1 1749 aa6.82□□□□□ -1.32
LINC00550-201ENST00000629293 PTGDRQ13258 359 aa6.82□□□□□ -1.32
LINC00550-201ENST00000629293 PHOX2BQ99453 314 aa6.82□□□□□ -1.32
LINC00550-201ENST00000629293 TULP4Q9NRJ4 1543 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 SPON1Q9HCB6 807 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 BMP2KQ9NSY1 1161 aaPredicted RBP6.81□□□□□ -1.32
LINC00550-201ENST00000629293 ZBTB7AO95365 584 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 NEUROD1Q13562 356 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 DDB1Q16531 1140 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 PTF1AQ7RTS3 328 aa6.81□□□□□ -1.32
LINC00550-201ENST00000629293 SSH2Q76I76 1423 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 NWD2Q9ULI1 1742 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 ADGRB1O14514 1584 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 CD44P16070 742 aaKnown RBP6.8□□□□□ -1.32
LINC00550-201ENST00000629293 PDGFDQ9GZP0 370 aaPredicted RBP6.8□□□□□ -1.32
LINC00550-201ENST00000629293 CENPJQ9HC77 1338 aaPredicted RBP6.8□□□□□ -1.32
LINC00550-201ENST00000629293 TMEM92Q6UXU6 159 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 PLPP6Q8IY26 295 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 NPDC1Q9NQX5 325 aaPredicted RBP6.8□□□□□ -1.32
LINC00550-201ENST00000629293 ATP7BP35670 1465 aa6.8□□□□□ -1.32
LINC00550-201ENST00000629293 DLC1Q96QB1 1528 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 HIC1Q14526 733 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 GIGYF2Q6Y7W6 1299 aaKnown RBP6.79□□□□□ -1.32
LINC00550-201ENST00000629293 COL14A1Q05707 1796 aaKnown RBP6.79□□□□□ -1.32
LINC00550-201ENST00000629293 C2orf72A6NCS6 295 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 TIE1P35590 1138 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.79□□□□□ -1.32
LINC00550-201ENST00000629293 PPIP5K1Q6PFW1 1433 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.79□□□□□ -1.32
LINC00550-201ENST00000629293 ANO8Q9HCE9 1232 aaPredicted RBP6.79□□□□□ -1.32
LINC00550-201ENST00000629293 ABCA3Q99758 1704 aa6.79□□□□□ -1.32
LINC00550-201ENST00000629293 GRXCR2A6NFK2 248 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 KCNQ2O43526 872 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 ACSBG1Q96GR2 724 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 AXIN2Q9Y2T1 843 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 CAMTA1Q9Y6Y1 1673 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 NPM2Q86SE8 214 aaKnown RBP6.78□□□□□ -1.32
LINC00550-201ENST00000629293 POM121Q96HA1 1249 aa6.78□□□□□ -1.32
LINC00550-201ENST00000629293 TMC1Q8TDI8 760 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 STAC3Q96MF2 364 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 NLRP2Q9NX02 1062 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 NRAPQ86VF7 1730 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 TRPM3Q9HCF6 1732 aaPredicted RBP6.77□□□□□ -1.33
LINC00550-201ENST00000629293 PELP1Q8IZL8 1130 aaKnown RBP6.77□□□□□ -1.33
LINC00550-201ENST00000629293 SIN3AQ96ST3 1273 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 ALS2Q96Q42 1657 aa6.77□□□□□ -1.33
LINC00550-201ENST00000629293 IRX5P78411 483 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms