RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.09□□□□□ -1.765e-7■□□□□ 10.3
LPP-220ENST00000617246 MAGI3Q5TCQ9 1506 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 ARAP3Q8WWN8 1544 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 ANKRD26Q9UPS8 1709 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 CRACR2BQ8N4Y2 399 aaPredicted RBP4.09□□□□□ -1.76
LPP-220ENST00000617246 VTI1AQ96AJ9 217 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 MAST3O60307 1309 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 ZNF408Q9H9D4 720 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 IQCA1LA6NCM1 817 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 FAM200AQ8TCP9 573 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 CENPJQ9HC77 1338 aaPredicted RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 NOLC1Q14978 699 aaKnown RBP eCLIP4.08□□□□□ -1.76
LPP-220ENST00000617246 SECISBP2LQ93073 1101 aaKnown RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 TCOF1Q13428 1488 aaKnown RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 RBM6P78332 1123 aaKnown RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 PTMAP06454 111 aaKnown RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 TRIM22Q8IYM9 498 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 NOD1Q9Y239 953 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 FAM135BQ49AJ0 1406 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 TRDNQ13061 729 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 PDE3AQ14432 1141 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.08□□□□□ -1.766e-7■■□□□ 11.4
LPP-220ENST00000617246 SPON1Q9HCB6 807 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 LRRC7Q96NW7 1537 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 NBPF11Q86T75 865 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 RAD50Q92878 1312 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 NBPF3Q9H094 633 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 IVNS1ABPQ9Y6Y0 642 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 HFM1A2PYH4 1435 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 IPO8O15397 1037 aaKnown RBP4.08□□□□□ -1.76
LPP-220ENST00000617246 NEBLO76041 1014 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 RALGAPBQ86X10 1494 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 ANKRD50Q9ULJ7 1429 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 PHF14O94880 888 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 HLA-DOAP06340 250 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 HOXD10P28358 340 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 UBXN2AP68543 259 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 HINFPQ9BQA5 517 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 NINLQ9Y2I6 1382 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 ZMYM4Q5VZL5 1548 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 PIK3C2GO75747 1445 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 FRMPD1Q5SYB0 1578 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 PLCD3Q8N3E9 789 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 FMN2Q9NZ56 1722 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 ABCC3O15438 1527 aa4.08□□□□□ -1.76
LPP-220ENST00000617246 TBC1D2BQ9UPU7 963 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 PABPN1LA6NDY0 278 aaKnown RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 UBR1Q8IWV7 1749 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 TRPM1Q7Z4N2 1603 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 TNFAIP1Q13829 316 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 CDK12Q9NYV4 1490 aaPredicted RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 PRC1O43663 620 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 PZPP20742 1482 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 DDX46Q7L014 1031 aaKnown RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 RTCBQ9Y3I0 505 aaKnown RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 PCDH11XQ9BZA7 1347 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 PCDH11YQ9BZA8 1340 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 NPATQ14207 1427 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 AGLP35573 1532 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 FEZ1Q99689 392 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 FAM50BQ9Y247 325 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 PALM3A6NDB9 673 aaPredicted RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 CCDC117Q8IWD4 279 aaPredicted RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 PPIP5K1Q6PFW1 1433 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 CHD4Q14839 1912 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 MPHOSPH8Q99549 860 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 RIC3Q7Z5B4 369 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 ENGASEQ8NFI3 743 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.07□□□□□ -1.76
LPP-220ENST00000617246 MARF1Q9Y4F3 1742 aaKnown RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 FAM83GA6ND36 823 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 BIRC2Q13490 618 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 SHANK2Q9UPX8 1470 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 PLEKHG2Q9H7P9 1386 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 FAM196AQ6ZSG2 479 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 CABP5Q9NP86 173 aa4.07□□□□□ -1.76
LPP-220ENST00000617246 C9orf78Q9NZ63 289 aaPredicted RBP4.07□□□□□ -1.76
LPP-220ENST00000617246 GOLGA6L4A6NEF3 574 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 SLC17A8Q8NDX2 589 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 APBB1IPQ7Z5R6 666 aaPredicted RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 NOC3LQ8WTT2 800 aaKnown RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 DCPSQ96C86 337 aaKnown RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 AS3MTQ9HBK9 375 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 ATP7BP35670 1465 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 LRRC45Q96CN5 670 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 M0QZ92 97 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 HSP90AB4PQ58FF6 505 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 ZGPATQ8N5A5 531 aaKnown RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 SLC4A8Q2Y0W8 1093 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 AFDNP55196 1824 aaKnown RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 TRIM29Q14134 588 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 DDX54Q8TDD1 881 aaKnown RBP4.06□□□□□ -1.76
LPP-220ENST00000617246 CPLX3Q8WVH0 158 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 KCNA4P22459 653 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 SH2D4AQ9H788 454 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 PLCH2O75038 1416 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 CAVIN4Q5BKX8 364 aa4.06□□□□□ -1.76
LPP-220ENST00000617246 H7C1D1 291 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 RAPGEF3O95398 923 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 HSP90AA2PQ14568 343 aaPredicted RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms