RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 ESPNB1AK53 854 aa20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 RBM42Q9BTD8 480 aaKnown RBP20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 ZMYND15Q9H091 742 aa20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 HSP90AB3PQ58FF7 597 aa20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 RAB11FIP3O75154 756 aa20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 SAMD1Q6SPF0 538 aaPredicted RBP20.48■□□□□ 0.87
HMGXB3-206ENST00000613459 MCM4P33991 863 aa20.47■□□□□ 0.87
HMGXB3-206ENST00000613459 PRXQ9BXM0 1461 aa20.47■□□□□ 0.87
HMGXB3-206ENST00000613459 NBPF8Q3BBV2 869 aa20.47■□□□□ 0.87
HMGXB3-206ENST00000613459 CEBPZQ03701 1054 aaKnown RBP20.46■□□□□ 0.87
HMGXB3-206ENST00000613459 AACSQ86V21 672 aa20.46■□□□□ 0.87
HMGXB3-206ENST00000613459 GBP3Q9H0R5 595 aa20.46■□□□□ 0.87
HMGXB3-206ENST00000613459 NFE2L2Q16236 605 aa20.45■□□□□ 0.87
HMGXB3-206ENST00000613459 PROSER2Q86WR7 435 aaPredicted RBP20.45■□□□□ 0.87
HMGXB3-206ENST00000613459 MTMR7Q9Y216 660 aa20.45■□□□□ 0.87
HMGXB3-206ENST00000613459 SUPT6HQ7KZ85 1726 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 CEP126Q9P2H0 1117 aa20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 PRG4Q92954 1404 aaPredicted RBP20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 PDCL3Q9H2J4 239 aa20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 SLC12A5Q9H2X9 1139 aa20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 UPF3BQ9BZI7 483 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-206ENST00000613459 MPHOSPH8Q99549 860 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 UBAC1Q9BSL1 405 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 CCDC141Q6ZP82 1450 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 TIAM1Q13009 1591 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 SEPT7Q16181 437 aaKnown RBP20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 CABP1Q9NZU7 370 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 ALDH1L2Q3SY69 923 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 ZSCAN30Q86W11 494 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 PLCD4Q9BRC7 762 aa20.44■□□□□ 0.86
HMGXB3-206ENST00000613459 KDM4AO75164 1064 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 JAKMIP1Q96N16 626 aaKnown RBP20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 SRGAP3O43295 1099 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 DESP17661 470 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 NEFHP12036 1026 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 SLFN5Q08AF3 891 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 MAP3K11Q16584 847 aa20.43■□□□□ 0.86
HMGXB3-206ENST00000613459 INCENPQ9NQS7 918 aa20.42■□□□□ 0.86
HMGXB3-206ENST00000613459 TANGO6Q9C0B7 1094 aa20.42■□□□□ 0.86
HMGXB3-206ENST00000613459 STK3Q13188 491 aa20.42■□□□□ 0.86
HMGXB3-206ENST00000613459 IMMTQ16891 758 aaKnown RBP20.41■□□□□ 0.86
HMGXB3-206ENST00000613459 KIF1BPQ96EK5 621 aa20.41■□□□□ 0.86
HMGXB3-206ENST00000613459 SH2B1Q9NRF2 756 aaPredicted RBP20.41■□□□□ 0.86
HMGXB3-206ENST00000613459 ZNF287Q9HBT7 754 aa20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 GLRX3O76003 335 aaKnown RBP20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 EZRP15311 586 aaKnown RBP20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 ENOX2Q16206 610 aaKnown RBP20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 JAKMIP3Q5VZ66 844 aa20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 PHAXQ9H814 394 aaKnown RBP20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 AKAP2Q9Y2D5 859 aa20.4■□□□□ 0.86
HMGXB3-206ENST00000613459 TOP2BQ02880 1626 aa20.39■□□□□ 0.86
HMGXB3-206ENST00000613459 CCDC148Q8NFR7 591 aa20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 EPB41L2O43491 1005 aaKnown RBP20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 ZNF397Q8NF99 534 aaPredicted RBP20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 NUP133Q8WUM0 1156 aa20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 TAF4BQ92750 862 aa20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 TDO2P48775 406 aa20.39■□□□□ 0.85
HMGXB3-206ENST00000613459 SCAND2PQ9GZW5 306 aaPredicted RBP20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 U3KPZ7 1027 aaPredicted RBP20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 DHX29Q7Z478 1369 aaKnown RBP20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 POGZQ7Z3K3 1410 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 ZSCAN12O43309 604 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 MCM3P25205 808 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 HMGB1P09429 215 aaKnown RBP20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 KCNH5Q8NCM2 988 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 SIL1Q9H173 461 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 BTBD11A6QL63 1104 aa20.38■□□□□ 0.85
HMGXB3-206ENST00000613459 CCDC102AQ96A19 550 aa20.37■□□□□ 0.85
HMGXB3-206ENST00000613459 MRC2Q9UBG0 1479 aa20.37■□□□□ 0.85
HMGXB3-206ENST00000613459 CTAGE5O15320 804 aa20.37■□□□□ 0.85
HMGXB3-206ENST00000613459 TMPOP42166 694 aaKnown RBP20.37■□□□□ 0.85
HMGXB3-206ENST00000613459 GNAT3A8MTJ3 354 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 TMCO3Q6UWJ1 677 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 TOM1L2Q6ZVM7 507 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 UBXN4Q92575 508 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 ANO10Q9NW15 660 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 CCDC196A0A1B0GTZ2 297 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 FAM177BA6PVY3 158 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 NSD3Q9BZ95 1437 aa20.36■□□□□ 0.85
HMGXB3-206ENST00000613459 PPP1R12BO60237 982 aaPredicted RBP20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 CWC27Q6UX04 472 aaKnown RBP20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 IGHMBP2P38935 993 aaKnown RBP20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 FKBP4Q02790 459 aaKnown RBP eCLIP20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 ARHGAP29Q52LW3 1261 aa20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 DNAI2Q9GZS0 605 aa20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 CETN2P41208 172 aa20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 CCDC183Q5T5S1 534 aa20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 FAM177A1Q8N128 213 aaPredicted RBP20.35■□□□□ 0.85
HMGXB3-206ENST00000613459 POTEJP0CG39 1038 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 MX1P20591 662 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 ZHX3Q9H4I2 956 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 EIF5P55010 431 aaKnown RBP20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 FAM193AP78312 1265 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 NEMFO60524 1076 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 KIAA1328Q86T90 577 aa20.34■□□□□ 0.85
HMGXB3-206ENST00000613459 GBP2P32456 591 aaPredicted RBP20.33■□□□□ 0.85
HMGXB3-206ENST00000613459 MAP9Q49MG5 647 aa20.33■□□□□ 0.85
HMGXB3-206ENST00000613459 CCDC184Q52MB2 194 aa20.33■□□□□ 0.85
HMGXB3-206ENST00000613459 ATP2B2Q01814 1243 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms