RNA–Protein interactions for RNA: ENST00000602492.5

PPFIA3-204, Transcript of PTPRF interacting protein alpha 3, human

TSL 4

Gene PPFIA3, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA3-204	ENST00000602492	RGPD2	P0DJD1	1756 aa		28.27	■■■□□ 2.12
PPFIA3-204	ENST00000602492	UTRN	P46939	3433 aa		28.25	■■■□□ 2.11
PPFIA3-204	ENST00000602492	DOT1L	Q8TEK3	1739 aa		28.25	■■■□□ 2.11
PPFIA3-204	ENST00000602492	SMG6	Q86US8	1419 aa	Known RBP	28.25	■■■□□ 2.11
PPFIA3-204	ENST00000602492	CDCA8	Q53HL2	280 aa		28.24	■■■□□ 2.11
PPFIA3-204	ENST00000602492	NBPF6	Q5VWK0	638 aa		28.24	■■■□□ 2.11
PPFIA3-204	ENST00000602492	SLC16A10	Q8TF71	515 aa		28.24	■■■□□ 2.11
PPFIA3-204	ENST00000602492	NBPF4	Q96M43	638 aa		28.24	■■■□□ 2.11
PPFIA3-204	ENST00000602492	CGNL1	Q0VF96	1302 aa		28.23	■■■□□ 2.11
PPFIA3-204	ENST00000602492	SHANK3	Q9BYB0	1731 aa		28.23	■■■□□ 2.11
PPFIA3-204	ENST00000602492	NSD2	O96028	1365 aa		28.23	■■■□□ 2.11
PPFIA3-204	ENST00000602492	MAP3K5	Q99683	1374 aa		28.23	■■■□□ 2.11
PPFIA3-204	ENST00000602492	TRIM26	Q12899	539 aa	Predicted RBP	28.22	■■■□□ 2.11
PPFIA3-204	ENST00000602492	RAPGEF4	Q8WZA2	1011 aa		28.22	■■■□□ 2.11
PPFIA3-204	ENST00000602492	USHBP1	Q8N6Y0	703 aa		28.21	■■■□□ 2.11
PPFIA3-204	ENST00000602492	TFCP2L1	Q9NZI6	479 aa		28.21	■■■□□ 2.11
PPFIA3-204	ENST00000602492	QSER1	Q2KHR3	1735 aa		28.21	■■■□□ 2.11
PPFIA3-204	ENST00000602492	PNPLA7	Q6ZV29	1317 aa		28.2	■■■□□ 2.11
PPFIA3-204	ENST00000602492	KCNQ4	P56696	695 aa		28.2	■■■□□ 2.1
PPFIA3-204	ENST00000602492	POLD1	P28340	1107 aa		28.19	■■■□□ 2.1
PPFIA3-204	ENST00000602492	INSR	P06213	1382 aa		28.18	■■■□□ 2.1
PPFIA3-204	ENST00000602492	LY75	O60449	1722 aa		28.18	■■■□□ 2.1
PPFIA3-204	ENST00000602492	FLT4	P35916	1363 aa		28.17	■■■□□ 2.1
PPFIA3-204	ENST00000602492	TAT	P17735	454 aa	Predicted RBP	28.17	■■■□□ 2.1
PPFIA3-204	ENST00000602492	CCNL1	Q9UK58	526 aa	Predicted RBP	28.17	■■■□□ 2.1
PPFIA3-204	ENST00000602492	KIF20B	Q96Q89	1820 aa		28.17	■■■□□ 2.1
PPFIA3-204	ENST00000602492	KIF24	Q5T7B8	1368 aa		28.16	■■■□□ 2.1
PPFIA3-204	ENST00000602492	HSP90AB2P	Q58FF8	381 aa		28.16	■■■□□ 2.1
PPFIA3-204	ENST00000602492	KLHL34	Q8N239	644 aa		28.14	■■■□□ 2.1
PPFIA3-204	ENST00000602492	TUBGCP6	Q96RT7	1819 aa		28.13	■■■□□ 2.09
PPFIA3-204	ENST00000602492	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.13	■■■□□ 2.09
PPFIA3-204	ENST00000602492	PCDH11X	Q9BZA7	1347 aa		28.13	■■■□□ 2.09
PPFIA3-204	ENST00000602492	PCDH11Y	Q9BZA8	1340 aa		28.13	■■■□□ 2.09
PPFIA3-204	ENST00000602492	NSD3	Q9BZ95	1437 aa		28.1	■■■□□ 2.09
PPFIA3-204	ENST00000602492	CHD4	Q14839	1912 aa		28.1	■■■□□ 2.09
PPFIA3-204	ENST00000602492	COL24A1	Q17RW2	1714 aa		28.1	■■■□□ 2.09
PPFIA3-204	ENST00000602492	CARD14	Q9BXL6	1004 aa		28.1	■■■□□ 2.09
PPFIA3-204	ENST00000602492	GPR162	Q16538	588 aa		28.09	■■■□□ 2.09
PPFIA3-204	ENST00000602492	EMILIN1	Q9Y6C2	1016 aa		28.08	■■■□□ 2.09
PPFIA3-204	ENST00000602492	MSH5	O43196	834 aa		28.07	■■■□□ 2.08
PPFIA3-204	ENST00000602492	HMGB2	P26583	209 aa	Known RBP	28.05	■■■□□ 2.08
PPFIA3-204	ENST00000602492	TIMELESS	Q9UNS1	1208 aa		28.05	■■■□□ 2.08
PPFIA3-204	ENST00000602492	CYP27B1	O15528	508 aa		28.04	■■■□□ 2.08
PPFIA3-204	ENST00000602492	COL23A1	Q86Y22	540 aa	Predicted RBP	28.04	■■■□□ 2.08
PPFIA3-204	ENST00000602492	PALLD	Q8WX93	1383 aa		28.03	■■■□□ 2.08
PPFIA3-204	ENST00000602492	PPM1G	O15355	546 aa	Predicted RBP	28.03	■■■□□ 2.08
PPFIA3-204	ENST00000602492	MPRIP	Q6WCQ1	1025 aa		28.03	■■■□□ 2.08
PPFIA3-204	ENST00000602492	GOLGB1	Q14789	3259 aa	Known RBP	28.02	■■■□□ 2.08
PPFIA3-204	ENST00000602492	PELP1	Q8IZL8	1130 aa	Known RBP	28.02	■■■□□ 2.08
PPFIA3-204	ENST00000602492	C5	P01031	1676 aa		28	■■■□□ 2.07
PPFIA3-204	ENST00000602492	NLGN2	Q8NFZ4	835 aa		28	■■■□□ 2.07
PPFIA3-204	ENST00000602492	SMARCC1	Q92922	1105 aa	Predicted RBP	27.99	■■■□□ 2.07
PPFIA3-204	ENST00000602492	NCAPD2	Q15021	1401 aa		27.99	■■■□□ 2.07
PPFIA3-204	ENST00000602492	PKD1L3	Q7Z443	1732 aa		27.98	■■■□□ 2.07
PPFIA3-204	ENST00000602492	FLAD1	Q8NFF5	587 aa		27.98	■■■□□ 2.07
PPFIA3-204	ENST00000602492	WASHC2A	Q641Q2	1341 aa		27.97	■■■□□ 2.07
PPFIA3-204	ENST00000602492	MSL1	Q68DK7	614 aa		27.97	■■■□□ 2.07
PPFIA3-204	ENST00000602492	SPG7	Q9UQ90	795 aa		27.97	■■■□□ 2.07
PPFIA3-204	ENST00000602492	ANKRD26	Q9UPS8	1709 aa		27.97	■■■□□ 2.07
PPFIA3-204	ENST00000602492	TOGARAM1	Q9Y4F4	1720 aa		27.96	■■■□□ 2.07
PPFIA3-204	ENST00000602492	ITGB4	P16144	1822 aa		27.95	■■■□□ 2.06
PPFIA3-204	ENST00000602492	CLSPN	Q9HAW4	1339 aa		27.94	■■■□□ 2.06
PPFIA3-204	ENST00000602492	NKX1-1	Q15270	411 aa	Predicted RBP	27.94	■■■□□ 2.06
PPFIA3-204	ENST00000602492	POLR3GL	Q9BT43	218 aa		27.94	■■■□□ 2.06
PPFIA3-204	ENST00000602492	TAF1L	Q8IZX4	1826 aa		27.94	■■■□□ 2.06
PPFIA3-204	ENST00000602492	PIGB	Q92521	554 aa		27.93	■■■□□ 2.06
PPFIA3-204	ENST00000602492	AK7	Q96M32	723 aa		27.93	■■■□□ 2.06
PPFIA3-204	ENST00000602492	EYA1	Q99502	592 aa		27.93	■■■□□ 2.06
PPFIA3-204	ENST00000602492	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	27.92	■■■□□ 2.06
PPFIA3-204	ENST00000602492	MAP2	P11137	1827 aa	Known RBP	27.92	■■■□□ 2.06
PPFIA3-204	ENST00000602492	POLK	Q9UBT6	870 aa		27.91	■■■□□ 2.06
PPFIA3-204	ENST00000602492	C4B	P0C0L5	1744 aa		27.9	■■■□□ 2.06
PPFIA3-204	ENST00000602492	GRIN3B	O60391	1043 aa		27.9	■■■□□ 2.06
PPFIA3-204	ENST00000602492	YBX3	P16989	372 aa	Known RBP eCLIP	27.88	■■■□□ 2.05
PPFIA3-204	ENST00000602492	PCGF6	Q9BYE7	350 aa		27.88	■■■□□ 2.05
PPFIA3-204	ENST00000602492	TMOD3	Q9NYL9	352 aa		27.88	■■■□□ 2.05
PPFIA3-204	ENST00000602492	CD2AP	Q9Y5K6	639 aa		27.88	■■■□□ 2.05
PPFIA3-204	ENST00000602492	LOC102724428	A0A0B4J2F2	783 aa		27.86	■■■□□ 2.05
PPFIA3-204	ENST00000602492	TNNT2	P45379	298 aa	Predicted RBP	27.86	■■■□□ 2.05
PPFIA3-204	ENST00000602492	SIK1	P57059	783 aa		27.86	■■■□□ 2.05
PPFIA3-204	ENST00000602492	C1QTNF8	P60827	252 aa		27.86	■■■□□ 2.05
PPFIA3-204	ENST00000602492	IFNL2	Q8IZJ0	200 aa		27.86	■■■□□ 2.05
PPFIA3-204	ENST00000602492	PHF14	O94880	888 aa		27.85	■■■□□ 2.05
PPFIA3-204	ENST00000602492	PHKG2	P15735	406 aa		27.84	■■■□□ 2.05
PPFIA3-204	ENST00000602492	EIF4A2	Q14240	407 aa	Known RBP	27.84	■■■□□ 2.05
PPFIA3-204	ENST00000602492	AMIGO3	Q86WK7	504 aa		27.84	■■■□□ 2.05
PPFIA3-204	ENST00000602492	UBR3	Q6ZT12	1888 aa		27.83	■■■□□ 2.05
PPFIA3-204	ENST00000602492	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.83	■■■□□ 2.05
PPFIA3-204	ENST00000602492	SSFA2	P28290	1259 aa		27.82	■■■□□ 2.04
PPFIA3-204	ENST00000602492	LINC00116	Q8NCU8	138 aa		27.82	■■■□□ 2.04
PPFIA3-204	ENST00000602492	ASAP1	Q9ULH1	1129 aa		27.82	■■■□□ 2.04
PPFIA3-204	ENST00000602492	PLEKHG2	Q9H7P9	1386 aa		27.82	■■■□□ 2.04
PPFIA3-204	ENST00000602492	GIGYF1	O75420	1035 aa	Predicted RBP	27.81	■■■□□ 2.04
PPFIA3-204	ENST00000602492	EIF4G2	P78344	907 aa	Known RBP eCLIP	27.81	■■■□□ 2.04
PPFIA3-204	ENST00000602492	SENP3-EIF4A1	A0A087X0R7	540 aa		27.8	■■■□□ 2.04
PPFIA3-204	ENST00000602492	SMIM5	Q71RC9	77 aa		27.8	■■■□□ 2.04
PPFIA3-204	ENST00000602492	ATP6V1A	P38606	617 aa		27.78	■■■□□ 2.04
PPFIA3-204	ENST00000602492	IGSF1	Q8N6C5	1336 aa		27.77	■■■□□ 2.04
PPFIA3-204	ENST00000602492	GNPAT	O15228	680 aa		27.77	■■■□□ 2.04
PPFIA3-204	ENST00000602492	HSPA5	P11021	654 aa	Known RBP	27.77	■■■□□ 2.04

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms