RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PDE3BQ13370 1112 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 DDB1Q16531 1140 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 USHBP1Q8N6Y0 703 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 KAT6BQ8WYB5 2073 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 EXOC5O00471 708 aa13.41□□□□□ -0.26
UPF1-213ENST00000601981 TNS2Q63HR2 1409 aa13.4□□□□□ -0.26
UPF1-213ENST00000601981 PKD1L3Q7Z443 1732 aa13.4□□□□□ -0.26
UPF1-213ENST00000601981 KRT27Q7Z3Y8 459 aa13.4□□□□□ -0.26
UPF1-213ENST00000601981 OVOS2A0A0G2JMS6 1433 aa13.39□□□□□ -0.27
UPF1-213ENST00000601981 NEFMP07197 916 aa13.39□□□□□ -0.27
UPF1-213ENST00000601981 SULT6B1Q6IMI4 303 aa13.39□□□□□ -0.27
UPF1-213ENST00000601981 MEGF6O75095 1541 aa13.39□□□□□ -0.27
UPF1-213ENST00000601981 KDRP35968 1356 aa13.38□□□□□ -0.27
UPF1-213ENST00000601981 U2AF1L5P0DN76 240 aaPredicted RBP13.38□□□□□ -0.27
UPF1-213ENST00000601981 U2AF1Q01081 240 aaKnown RBP eCLIP13.38□□□□□ -0.27
UPF1-213ENST00000601981 PNNQ9H307 717 aaKnown RBP13.38□□□□□ -0.27
UPF1-213ENST00000601981 SPG7Q9UQ90 795 aa13.38□□□□□ -0.27
UPF1-213ENST00000601981 SHANK3Q9BYB0 1731 aa13.37□□□□□ -0.27
UPF1-213ENST00000601981 WDR43Q15061 677 aaKnown RBP eCLIP13.37□□□□□ -0.27
UPF1-213ENST00000601981 FAM9BQ8IZU0 186 aa13.37□□□□□ -0.27
UPF1-213ENST00000601981 ZCRB1Q8TBF4 217 aaKnown RBP13.37□□□□□ -0.27
UPF1-213ENST00000601981 PNISRQ8TF01 805 aaKnown RBP13.37□□□□□ -0.27
UPF1-213ENST00000601981 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.27
UPF1-213ENST00000601981 PCDH11XQ9BZA7 1347 aa13.37□□□□□ -0.27
UPF1-213ENST00000601981 PCDH11YQ9BZA8 1340 aa13.37□□□□□ -0.27
UPF1-213ENST00000601981 EP400Q96L91 3159 aa13.36□□□□□ -0.27
UPF1-213ENST00000601981 HMOX1P09601 288 aa13.36□□□□□ -0.27
UPF1-213ENST00000601981 HNRNPUQ00839 825 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF1-213ENST00000601981 AMOTQ4VCS5 1084 aa13.36□□□□□ -0.27
UPF1-213ENST00000601981 PLEKHO1Q53GL0 409 aaPredicted RBP13.36□□□□□ -0.27
UPF1-213ENST00000601981 SBF2Q86WG5 1849 aa13.34□□□□□ -0.27
UPF1-213ENST00000601981 FCHSD2O94868 740 aa13.34□□□□□ -0.27
UPF1-213ENST00000601981 FAM196AQ6ZSG2 479 aa13.34□□□□□ -0.27
UPF1-213ENST00000601981 AEBP1Q8IUX7 1158 aa13.34□□□□□ -0.27
UPF1-213ENST00000601981 VIRMAQ69YN4 1812 aaKnown RBP13.34□□□□□ -0.27
UPF1-213ENST00000601981 C1orf141Q5JVX7 400 aa13.33□□□□□ -0.28
UPF1-213ENST00000601981 DDX54Q8TDD1 881 aaKnown RBP13.33□□□□□ -0.28
UPF1-213ENST00000601981 ZBED9Q6R2W3 1325 aa13.33□□□□□ -0.28
UPF1-213ENST00000601981 MAPK8IP3Q9UPT6 1336 aa13.32□□□□□ -0.28
UPF1-213ENST00000601981 DOT1LQ8TEK3 1739 aa13.31□□□□□ -0.28
UPF1-213ENST00000601981 HSP90AB1P08238 724 aaKnown RBP13.31□□□□□ -0.28
UPF1-213ENST00000601981 PRKAR2BP31323 418 aa13.31□□□□□ -0.28
UPF1-213ENST00000601981 ZNF530Q6P9A1 599 aaPredicted RBP13.31□□□□□ -0.28
UPF1-213ENST00000601981 IFNL2Q8IZJ0 200 aa13.31□□□□□ -0.28
UPF1-213ENST00000601981 MARCH10Q8NA82 808 aaPredicted RBP13.31□□□□□ -0.28
UPF1-213ENST00000601981 GAS2L2Q8NHY3 880 aa13.31□□□□□ -0.28
UPF1-213ENST00000601981 RSPH6AQ9H0K4 717 aa13.31□□□□□ -0.28
UPF1-213ENST00000601981 BCL9O00512 1426 aa13.3□□□□□ -0.28
UPF1-213ENST00000601981 SF3B2Q13435 895 aaKnown RBP13.3□□□□□ -0.28
UPF1-213ENST00000601981 CCDC125Q86Z20 511 aa13.3□□□□□ -0.28
UPF1-213ENST00000601981 NHSQ6T4R5 1651 aa13.3□□□□□ -0.28
UPF1-213ENST00000601981 SCN11AQ9UI33 1791 aa13.29□□□□□ -0.28
UPF1-213ENST00000601981 ITGB4P16144 1822 aa13.29□□□□□ -0.28
UPF1-213ENST00000601981 DLG5Q8TDM6 1919 aa13.29□□□□□ -0.28
UPF1-213ENST00000601981 PHKG2P15735 406 aa13.28□□□□□ -0.28
UPF1-213ENST00000601981 AKAP4Q5JQC9 854 aa13.28□□□□□ -0.28
UPF1-213ENST00000601981 FAM182BQ5T319 152 aa13.28□□□□□ -0.28
UPF1-213ENST00000601981 CYP27B1O15528 508 aa13.27□□□□□ -0.29
UPF1-213ENST00000601981 TNS1Q9HBL0 1735 aaKnown RBP13.27□□□□□ -0.29
UPF1-213ENST00000601981 NKX1-1Q15270 411 aaPredicted RBP13.26□□□□□ -0.29
UPF1-213ENST00000601981 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
UPF1-213ENST00000601981 RUNDC1Q96C34 613 aa13.26□□□□□ -0.29
UPF1-213ENST00000601981 DCAF5Q96JK2 942 aa13.26□□□□□ -0.29
UPF1-213ENST00000601981 MAP3K5Q99683 1374 aa13.26□□□□□ -0.29
UPF1-213ENST00000601981 ADAMTS8Q9UP79 889 aa13.26□□□□□ -0.29
UPF1-213ENST00000601981 BTAF1O14981 1849 aa13.25□□□□□ -0.29
UPF1-213ENST00000601981 TOGARAM1Q9Y4F4 1720 aa13.25□□□□□ -0.29
UPF1-213ENST00000601981 GNAT3A8MTJ3 354 aa13.25□□□□□ -0.29
UPF1-213ENST00000601981 RTF1Q92541 710 aaKnown RBP13.25□□□□□ -0.29
UPF1-213ENST00000601981 SYTL4Q96C24 671 aaPredicted RBP13.25□□□□□ -0.29
UPF1-213ENST00000601981 GTF3C3Q9Y5Q9 886 aa13.25□□□□□ -0.29
UPF1-213ENST00000601981 TRIM37O94972 964 aa13.24□□□□□ -0.29
UPF1-213ENST00000601981 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
UPF1-213ENST00000601981 PHACTR3Q96KR7 559 aa13.24□□□□□ -0.29
UPF1-213ENST00000601981 PLEKHF1Q96S99 279 aa13.24□□□□□ -0.29
UPF1-213ENST00000601981 BCL11BQ9C0K0 894 aaPredicted RBP13.24□□□□□ -0.29
UPF1-213ENST00000601981 RGPD3A6NKT7 1758 aaPredicted RBP13.24□□□□□ -0.29
UPF1-213ENST00000601981 RGPD4Q7Z3J3 1758 aa13.24□□□□□ -0.29
UPF1-213ENST00000601981 BAG6P46379 1132 aa13.23□□□□□ -0.29
UPF1-213ENST00000601981 LMOD3Q0VAK6 560 aa13.23□□□□□ -0.29
UPF1-213ENST00000601981 ADAMTS7Q9UKP4 1686 aa13.22□□□□□ -0.29
UPF1-213ENST00000601981 ERVV-2B6SEH9 535 aa13.22□□□□□ -0.29
UPF1-213ENST00000601981 HTATSF1O43719 755 aaKnown RBP13.22□□□□□ -0.29
UPF1-213ENST00000601981 NFE2L2Q16236 605 aa13.22□□□□□ -0.29
UPF1-213ENST00000601981 CCDC146Q8IYE0 955 aa13.22□□□□□ -0.29
UPF1-213ENST00000601981 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
UPF1-213ENST00000601981 PRIM1P49642 420 aaKnown RBP13.21□□□□□ -0.29
UPF1-213ENST00000601981 CABP4P57796 275 aa13.21□□□□□ -0.29
UPF1-213ENST00000601981 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.29
UPF1-213ENST00000601981 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
UPF1-213ENST00000601981 RNMTO43148 476 aaKnown RBP13.2□□□□□ -0.3
UPF1-213ENST00000601981 APBA3O96018 575 aa13.2□□□□□ -0.3
UPF1-213ENST00000601981 TEFQ10587 303 aa13.2□□□□□ -0.3
UPF1-213ENST00000601981 MRC1P22897 1456 aa13.19□□□□□ -0.3
UPF1-213ENST00000601981 TMPOP42166 694 aaKnown RBP13.19□□□□□ -0.3
UPF1-213ENST00000601981 RIPK4P57078 832 aa13.19□□□□□ -0.3
UPF1-213ENST00000601981 SMARCC1Q92922 1105 aaPredicted RBP13.19□□□□□ -0.3
UPF1-213ENST00000601981 SIPA1L3O60292 1781 aaPredicted RBP13.19□□□□□ -0.3
UPF1-213ENST00000601981 KCNQ2O43526 872 aa13.18□□□□□ -0.3
UPF1-213ENST00000601981 HMGB2P26583 209 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms