RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 RNF123Q5XPI4 1314 aa23.35■■□□□ 1.33
VRK3-225ENST00000601912 FKBP8Q14318 412 aa23.35■■□□□ 1.33
VRK3-225ENST00000601912 TOM1L2Q6ZVM7 507 aa23.35■■□□□ 1.33
VRK3-225ENST00000601912 MAP3K5Q99683 1374 aa23.34■■□□□ 1.33
VRK3-225ENST00000601912 MCM10Q7L590 875 aa23.34■■□□□ 1.33
VRK3-225ENST00000601912 TSR2Q969E8 191 aaKnown RBP23.34■■□□□ 1.33
VRK3-225ENST00000601912 CFAP44Q96MT7 982 aa23.34■■□□□ 1.33
VRK3-225ENST00000601912 TATP17735 454 aaPredicted RBP23.33■■□□□ 1.33
VRK3-225ENST00000601912 CT47B1P0C2W7 299 aaPredicted RBP23.32■■□□□ 1.32
VRK3-225ENST00000601912 STRN4Q9NRL3 753 aa23.32■■□□□ 1.32
VRK3-225ENST00000601912 PLEKHG2Q9H7P9 1386 aa23.32■■□□□ 1.32
VRK3-225ENST00000601912 ZNF853P0CG23 659 aa23.32■■□□□ 1.32
VRK3-225ENST00000601912 BTG4Q9NY30 223 aa23.32■■□□□ 1.32
VRK3-225ENST00000601912 COL14A1Q05707 1796 aaKnown RBP23.31■■□□□ 1.32
VRK3-225ENST00000601912 ZNF530Q6P9A1 599 aaPredicted RBP23.31■■□□□ 1.32
VRK3-225ENST00000601912 RRP1P56182 461 aaKnown RBP23.3■■□□□ 1.32
VRK3-225ENST00000601912 AKAP4Q5JQC9 854 aa23.3■■□□□ 1.32
VRK3-225ENST00000601912 C1orf141Q5JVX7 400 aa23.3■■□□□ 1.32
VRK3-225ENST00000601912 CARD10Q9BWT7 1032 aa23.3■■□□□ 1.32
VRK3-225ENST00000601912 JCADQ9P266 1359 aa23.3■■□□□ 1.32
VRK3-225ENST00000601912 EXOSC9Q06265 439 aaKnown RBP23.29■■□□□ 1.32
VRK3-225ENST00000601912 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.29■■□□□ 1.321e-7■■□□□ 12.1
VRK3-225ENST00000601912 SPG7Q9UQ90 795 aa23.29■■□□□ 1.32
VRK3-225ENST00000601912 NUTM2BA6NNL0 878 aaPredicted RBP23.28■■□□□ 1.32
VRK3-225ENST00000601912 NUTM2EB1AL46 878 aaPredicted RBP23.28■■□□□ 1.32
VRK3-225ENST00000601912 ADAMTS2O95450 1211 aa23.28■■□□□ 1.32
VRK3-225ENST00000601912 NUTM2AQ8IVF1 878 aaPredicted RBP23.28■■□□□ 1.32
VRK3-225ENST00000601912 LARP1Q6PKG0 1096 aaKnown RBP23.28■■□□□ 1.32
VRK3-225ENST00000601912 MBIPQ9NS73 344 aa23.28■■□□□ 1.32
VRK3-225ENST00000601912 CRB1P82279 1406 aa23.27■■□□□ 1.31
VRK3-225ENST00000601912 IRX6P78412 446 aaPredicted RBP23.26■■□□□ 1.31
VRK3-225ENST00000601912 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.26■■□□□ 1.31
VRK3-225ENST00000601912 CHL1O00533 1208 aa23.25■■□□□ 1.31
VRK3-225ENST00000601912 IL17REQ8NFR9 667 aa23.25■■□□□ 1.31
VRK3-225ENST00000601912 MEGF6O75095 1541 aa23.25■■□□□ 1.31
VRK3-225ENST00000601912 ERICH6BQ5W0A0 696 aa23.24■■□□□ 1.31
VRK3-225ENST00000601912 RARSP54136 660 aaKnown RBP23.22■■□□□ 1.31
VRK3-225ENST00000601912 IL2RBP14784 551 aa23.22■■□□□ 1.31
VRK3-225ENST00000601912 ZNF428Q96B54 188 aa23.22■■□□□ 1.31
VRK3-225ENST00000601912 BABAM1Q9NWV8 329 aa23.22■■□□□ 1.31
VRK3-225ENST00000601912 CEMIPQ8WUJ3 1361 aa23.21■■□□□ 1.31
VRK3-225ENST00000601912 TAF7Q15545 349 aaPredicted RBP23.21■■□□□ 1.31
VRK3-225ENST00000601912 IFNL2Q8IZJ0 200 aa23.21■■□□□ 1.31
VRK3-225ENST00000601912 TSPYL4Q9UJ04 414 aa23.21■■□□□ 1.31
VRK3-225ENST00000601912 SPATA31A6Q5VVP1 1343 aa23.2■■□□□ 1.31
VRK3-225ENST00000601912 OVOS2A0A0G2JMS6 1433 aa23.2■■□□□ 1.31
VRK3-225ENST00000601912 LRRC37A3O60309 1634 aa23.2■■□□□ 1.3
VRK3-225ENST00000601912 BCAR3O75815 825 aa23.2■■□□□ 1.3
VRK3-225ENST00000601912 MPRIPQ6WCQ1 1025 aa23.2■■□□□ 1.3
VRK3-225ENST00000601912 LGR6Q9HBX8 967 aa23.19■■□□□ 1.3
VRK3-225ENST00000601912 RNMTO43148 476 aaKnown RBP23.19■■□□□ 1.3
VRK3-225ENST00000601912 TEFQ10587 303 aa23.19■■□□□ 1.3
VRK3-225ENST00000601912 USP35Q9P2H5 1018 aa23.19■■□□□ 1.3
VRK3-225ENST00000601912 PARP4Q9UKK3 1724 aaKnown RBP23.19■■□□□ 1.3
VRK3-225ENST00000601912 PLIN1O60240 522 aa23.18■■□□□ 1.3
VRK3-225ENST00000601912 PHKG2P15735 406 aa23.18■■□□□ 1.3
VRK3-225ENST00000601912 HSPA1LP34931 641 aa23.18■■□□□ 1.3
VRK3-225ENST00000601912 ZCRB1Q8TBF4 217 aaKnown RBP23.18■■□□□ 1.3
VRK3-225ENST00000601912 PLCH1Q4KWH8 1693 aa23.17■■□□□ 1.3
VRK3-225ENST00000601912 HSP90AB1P08238 724 aaKnown RBP23.17■■□□□ 1.3
VRK3-225ENST00000601912 TWISTNBQ3B726 338 aaPredicted RBP23.17■■□□□ 1.3
VRK3-225ENST00000601912 MIS18AQ9NYP9 233 aa23.17■■□□□ 1.3
VRK3-225ENST00000601912 PKD1L3Q7Z443 1732 aa23.17■■□□□ 1.3
VRK3-225ENST00000601912 VAMP4O75379 141 aa23.16■■□□□ 1.3
VRK3-225ENST00000601912 ALDH1L2Q3SY69 923 aa23.16■■□□□ 1.3
VRK3-225ENST00000601912 PCDH11XQ9BZA7 1347 aa23.15■■□□□ 1.3
VRK3-225ENST00000601912 PCDH11YQ9BZA8 1340 aa23.15■■□□□ 1.3
VRK3-225ENST00000601912 CANXP27824 592 aaKnown RBP23.15■■□□□ 1.3
VRK3-225ENST00000601912 C8orf58Q8NAV2 365 aa23.15■■□□□ 1.3
VRK3-225ENST00000601912 SMC4Q9NTJ3 1288 aa23.15■■□□□ 1.3
VRK3-225ENST00000601912 ELL2O00472 640 aaPredicted RBP23.14■■□□□ 1.29
VRK3-225ENST00000601912 TSPYL6Q8N831 410 aa23.14■■□□□ 1.29
VRK3-225ENST00000601912 CYP27B1O15528 508 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 DCAF5Q96JK2 942 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 BCL2L13Q9BXK5 485 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 NWD2Q9ULI1 1742 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 SLIT2O94813 1529 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 SSH1Q8WYL5 1049 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 NGLY1Q96IV0 654 aa23.13■■□□□ 1.29
VRK3-225ENST00000601912 FRAT1Q92837 279 aaPredicted RBP23.12■■□□□ 1.29
VRK3-225ENST00000601912 C8orf37Q96NL8 207 aa23.12■■□□□ 1.29
VRK3-225ENST00000601912 THRAP3Q9Y2W1 955 aaKnown RBP23.11■■□□□ 1.29
VRK3-225ENST00000601912 NRAPQ86VF7 1730 aa23.11■■□□□ 1.29
VRK3-225ENST00000601912 BTBD11A6QL63 1104 aa23.1■■□□□ 1.29
VRK3-225ENST00000601912 CDCA7Q9BWT1 371 aaPredicted RBP23.1■■□□□ 1.29
VRK3-225ENST00000601912 ADAMTS7Q9UKP4 1686 aa23.1■■□□□ 1.29
VRK3-225ENST00000601912 UNC5CLQ8IV45 518 aa23.09■■□□□ 1.29
VRK3-225ENST00000601912 SPATA31A1Q5TZJ5 1347 aa23.09■■□□□ 1.29
VRK3-225ENST00000601912 VIRMAQ69YN4 1812 aaKnown RBP23.09■■□□□ 1.29
VRK3-225ENST00000601912 KDM6AO15550 1401 aaPredicted RBP23.08■■□□□ 1.29
VRK3-225ENST00000601912 SOS1Q07889 1333 aaPredicted RBP23.08■■□□□ 1.29
VRK3-225ENST00000601912 KIF16BQ96L93 1317 aa23.08■■□□□ 1.29
VRK3-225ENST00000601912 PDE3AQ14432 1141 aa23.08■■□□□ 1.29
VRK3-225ENST00000601912 SLC52A2Q9HAB3 445 aa23.08■■□□□ 1.29
VRK3-225ENST00000601912 PPP4R2Q9NY27 417 aa23.08■■□□□ 1.29
VRK3-225ENST00000601912 BRPF1P55201 1214 aaPredicted RBP23.07■■□□□ 1.28
VRK3-225ENST00000601912 KRT24Q2M2I5 525 aa23.07■■□□□ 1.28
VRK3-225ENST00000601912 DDX54Q8TDD1 881 aaKnown RBP23.07■■□□□ 1.28
VRK3-225ENST00000601912 CCDC9Q9Y3X0 531 aaKnown RBP23.07■■□□□ 1.28
VRK3-225ENST00000601912 SCN11AQ9UI33 1791 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms