RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 R3HDM1Q15032 1099 aaKnown RBP30.93■■■□□ 2.54
CCDC9-204ENST00000599398 MORC1Q86VD1 984 aa30.93■■■□□ 2.54
CCDC9-204ENST00000599398 ZCRB1Q8TBF4 217 aaKnown RBP30.93■■■□□ 2.54
CCDC9-204ENST00000599398 NHSQ6T4R5 1651 aa30.92■■■□□ 2.54
CCDC9-204ENST00000599398 RGPD3A6NKT7 1758 aaPredicted RBP30.92■■■□□ 2.54
CCDC9-204ENST00000599398 RGPD4Q7Z3J3 1758 aa30.92■■■□□ 2.54
CCDC9-204ENST00000599398 TATP17735 454 aaPredicted RBP30.91■■■□□ 2.54
CCDC9-204ENST00000599398 NBPF14Q5TI25 921 aa30.89■■■□□ 2.54
CCDC9-204ENST00000599398 SHANK3Q9BYB0 1731 aa30.87■■■□□ 2.53
CCDC9-204ENST00000599398 AMER1Q5JTC6 1135 aaPredicted RBP30.85■■■□□ 2.53
CCDC9-204ENST00000599398 EYA1Q99502 592 aa30.84■■■□□ 2.53
CCDC9-204ENST00000599398 BTAF1O14981 1849 aa30.84■■■□□ 2.53
CCDC9-204ENST00000599398 EIF4A2Q14240 407 aaKnown RBP30.83■■■□□ 2.53
CCDC9-204ENST00000599398 SYTL4Q96C24 671 aaPredicted RBP30.82■■■□□ 2.52
CCDC9-204ENST00000599398 TXNRD1Q16881 649 aa30.8■■■□□ 2.52
CCDC9-204ENST00000599398 PROM2Q8N271 834 aa30.8■■■□□ 2.52
CCDC9-204ENST00000599398 DOT1LQ8TEK3 1739 aa30.8■■■□□ 2.52
CCDC9-204ENST00000599398 NCAPD2Q15021 1401 aa30.8■■■□□ 2.52
CCDC9-204ENST00000599398 PCDH11XQ9BZA7 1347 aa30.79■■■□□ 2.52
CCDC9-204ENST00000599398 PCDH11YQ9BZA8 1340 aa30.79■■■□□ 2.52
CCDC9-204ENST00000599398 PER1O15534 1290 aaPredicted RBP30.79■■■□□ 2.52
CCDC9-204ENST00000599398 PRIM1P49642 420 aaKnown RBP30.78■■■□□ 2.52
CCDC9-204ENST00000599398 CC2D1BQ5T0F9 858 aaKnown RBP30.78■■■□□ 2.52
CCDC9-204ENST00000599398 CNGB1Q14028 1251 aaPredicted RBP30.75■■■□□ 2.51
CCDC9-204ENST00000599398 PKD1L3Q7Z443 1732 aa30.74■■■□□ 2.51
CCDC9-204ENST00000599398 ANO8Q9HCE9 1232 aaPredicted RBP30.74■■■□□ 2.51
CCDC9-204ENST00000599398 SPG7Q9UQ90 795 aa30.73■■■□□ 2.51
CCDC9-204ENST00000599398 LRP5O75197 1615 aa30.72■■■□□ 2.51
CCDC9-204ENST00000599398 CYP27B1O15528 508 aa30.71■■■□□ 2.51
CCDC9-204ENST00000599398 IGSF1Q8N6C5 1336 aa30.71■■■□□ 2.51
CCDC9-204ENST00000599398 STK32BQ9NY57 414 aa30.69■■■□□ 2.5
CCDC9-204ENST00000599398 MTHFSP49914 203 aa30.67■■■□□ 2.5
CCDC9-204ENST00000599398 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.67■■■□□ 2.5
CCDC9-204ENST00000599398 NPC1L1Q9UHC9 1359 aa30.65■■■□□ 2.5
CCDC9-204ENST00000599398 SLC15A2Q16348 729 aa30.63■■■□□ 2.49
CCDC9-204ENST00000599398 MPRIPQ6WCQ1 1025 aa30.62■■■□□ 2.49
CCDC9-204ENST00000599398 LRRC4BQ9NT99 713 aa30.62■■■□□ 2.49
CCDC9-204ENST00000599398 IL13P35225 146 aa30.61■■■□□ 2.49
CCDC9-204ENST00000599398 SLC27A3Q5K4L6 730 aa30.61■■■□□ 2.49
CCDC9-204ENST00000599398 AEBP1Q8IUX7 1158 aa30.61■■■□□ 2.49
CCDC9-204ENST00000599398 IFNL2Q8IZJ0 200 aa30.61■■■□□ 2.49
CCDC9-204ENST00000599398 TOGARAM1Q9Y4F4 1720 aa30.61■■■□□ 2.49
CCDC9-204ENST00000599398 ITGB4P16144 1822 aa30.6■■■□□ 2.49
CCDC9-204ENST00000599398 LY75O60449 1722 aa30.59■■■□□ 2.49
CCDC9-204ENST00000599398 PLEKHG2Q9H7P9 1386 aa30.59■■■□□ 2.49
CCDC9-204ENST00000599398 PHKG2P15735 406 aa30.59■■■□□ 2.49
CCDC9-204ENST00000599398 NKX1-1Q15270 411 aaPredicted RBP30.59■■■□□ 2.49
CCDC9-204ENST00000599398 SULT6B1Q6IMI4 303 aa30.59■■■□□ 2.49
CCDC9-204ENST00000599398 PAPPAQ13219 1627 aa30.58■■■□□ 2.49
CCDC9-204ENST00000599398 KCNQ4P56696 695 aa30.58■■■□□ 2.49
CCDC9-204ENST00000599398 PLEKHO1Q53GL0 409 aaPredicted RBP30.58■■■□□ 2.49
CCDC9-204ENST00000599398 PDGFDQ9GZP0 370 aaPredicted RBP30.56■■■□□ 2.48
CCDC9-204ENST00000599398 SPON1Q9HCB6 807 aa30.56■■■□□ 2.48
CCDC9-204ENST00000599398 CCNL1Q9UK58 526 aaPredicted RBP30.56■■■□□ 2.48
CCDC9-204ENST00000599398 CASZ1Q86V15 1759 aa30.56■■■□□ 2.48
CCDC9-204ENST00000599398 ZNF827Q17R98 1081 aa30.54■■■□□ 2.48
CCDC9-204ENST00000599398 AMOTQ4VCS5 1084 aa30.54■■■□□ 2.48
CCDC9-204ENST00000599398 DIAPH1O60610 1272 aaKnown RBP30.53■■■□□ 2.48
CCDC9-204ENST00000599398 ZNF530Q6P9A1 599 aaPredicted RBP30.53■■■□□ 2.48
CCDC9-204ENST00000599398 PIGBQ92521 554 aa30.52■■■□□ 2.48
CCDC9-204ENST00000599398 KDRP35968 1356 aa30.52■■■□□ 2.48
CCDC9-204ENST00000599398 PALLDQ8WX93 1383 aa30.52■■■□□ 2.48
CCDC9-204ENST00000599398 ZBTB7AO95365 584 aa30.51■■■□□ 2.47
CCDC9-204ENST00000599398 TMOD3Q9NYL9 352 aa30.51■■■□□ 2.47
CCDC9-204ENST00000599398 HSP90AB1P08238 724 aaKnown RBP30.49■■■□□ 2.47
CCDC9-204ENST00000599398 HMOX1P09601 288 aa30.49■■■□□ 2.47
CCDC9-204ENST00000599398 SMARCC1Q92922 1105 aaPredicted RBP30.49■■■□□ 2.47
CCDC9-204ENST00000599398 AKT1S1Q96B36 256 aa30.49■■■□□ 2.47
CCDC9-204ENST00000599398 C1orf141Q5JVX7 400 aa30.48■■■□□ 2.47
CCDC9-204ENST00000599398 PPP1R1BQ9UD71 204 aaPredicted RBP30.48■■■□□ 2.47
CCDC9-204ENST00000599398 TFCP2L1Q9NZI6 479 aa30.47■■■□□ 2.47
CCDC9-204ENST00000599398 DCAF5Q96JK2 942 aa30.46■■■□□ 2.47
CCDC9-204ENST00000599398 ATF5Q9Y2D1 282 aaPredicted RBP30.46■■■□□ 2.47
CCDC9-204ENST00000599398 COL3A1P02461 1466 aaPredicted RBP30.44■■■□□ 2.46
CCDC9-204ENST00000599398 U2SURPO15042 1029 aaKnown RBP30.43■■■□□ 2.46
CCDC9-204ENST00000599398 C5P01031 1676 aa30.42■■■□□ 2.46
CCDC9-204ENST00000599398 ERVV-2B6SEH9 535 aa30.42■■■□□ 2.46
CCDC9-204ENST00000599398 CFAP53Q96M91 514 aa30.42■■■□□ 2.46
CCDC9-204ENST00000599398 TUBGCP6Q96RT7 1819 aa30.42■■■□□ 2.46
CCDC9-204ENST00000599398 MTFR1LQ9H019 292 aa30.41■■■□□ 2.46
CCDC9-204ENST00000599398 ASAP1Q9ULH1 1129 aa30.41■■■□□ 2.46
CCDC9-204ENST00000599398 QSER1Q2KHR3 1735 aa30.41■■■□□ 2.46
CCDC9-204ENST00000599398 KDM6AO15550 1401 aaPredicted RBP30.4■■■□□ 2.46
CCDC9-204ENST00000599398 TAF1LQ8IZX4 1826 aa30.4■■■□□ 2.46
CCDC9-204ENST00000599398 HMGB2P26583 209 aaKnown RBP30.39■■■□□ 2.46
CCDC9-204ENST00000599398 PPP2R1AP30153 589 aa30.39■■■□□ 2.46
CCDC9-204ENST00000599398 CABP4P57796 275 aa30.39■■■□□ 2.46
CCDC9-204ENST00000599398 PNPLA7Q6ZV29 1317 aa30.39■■■□□ 2.46
CCDC9-204ENST00000599398 LOC102724428A0A0B4J2F2 783 aa30.37■■■□□ 2.45
CCDC9-204ENST00000599398 SIK1P57059 783 aa30.37■■■□□ 2.45
CCDC9-204ENST00000599398 ATG3Q9NT62 314 aa30.37■■■□□ 2.45
CCDC9-204ENST00000599398 AKAP4Q5JQC9 854 aa30.36■■■□□ 2.45
CCDC9-204ENST00000599398 MSH5O43196 834 aa30.35■■■□□ 2.45
CCDC9-204ENST00000599398 PTGER2P43116 358 aa30.35■■■□□ 2.45
CCDC9-204ENST00000599398 SCN11AQ9UI33 1791 aa30.33■■■□□ 2.45
CCDC9-204ENST00000599398 C4BP0C0L5 1744 aa30.33■■■□□ 2.45
CCDC9-204ENST00000599398 ATP6V1AP38606 617 aa30.32■■■□□ 2.44
CCDC9-204ENST00000599398 MTHFSDQ2M296 383 aaKnown RBP30.32■■■□□ 2.44
CCDC9-204ENST00000599398 SLC16A10Q8TF71 515 aa30.32■■■□□ 2.44
CCDC9-204ENST00000599398 AK7Q96M32 723 aa30.32■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms