RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CGNL1Q0VF96 1302 aa17.54■□□□□ 0.4
TRIM28-212ENST00000597995 PNPLA7Q6ZV29 1317 aa17.54■□□□□ 0.4
TRIM28-212ENST00000597995 POLD1P28340 1107 aa17.54■□□□□ 0.4
TRIM28-212ENST00000597995 TFCP2L1Q9NZI6 479 aa17.54■□□□□ 0.4
TRIM28-212ENST00000597995 CHD4Q14839 1912 aa17.53■□□□□ 0.4
TRIM28-212ENST00000597995 FYB1O15117 783 aa17.53■□□□□ 0.4
TRIM28-212ENST00000597995 NSD2O96028 1365 aa17.53■□□□□ 0.4
TRIM28-212ENST00000597995 TMF1P82094 1093 aa17.52■□□□□ 0.4
TRIM28-212ENST00000597995 NBPF6Q5VWK0 638 aa17.52■□□□□ 0.4
TRIM28-212ENST00000597995 NBPF4Q96M43 638 aa17.52■□□□□ 0.4
TRIM28-212ENST00000597995 COL24A1Q17RW2 1714 aa17.52■□□□□ 0.39
TRIM28-212ENST00000597995 MEGF6O75095 1541 aa17.52■□□□□ 0.39
TRIM28-212ENST00000597995 RRS1Q15050 365 aaKnown RBP17.51■□□□□ 0.39
TRIM28-212ENST00000597995 RGPD2P0DJD1 1756 aa17.51■□□□□ 0.39
TRIM28-212ENST00000597995 LY75O60449 1722 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 DOT1LQ8TEK3 1739 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 HMGB2P26583 209 aaKnown RBP17.5■□□□□ 0.39
TRIM28-212ENST00000597995 KCNQ4P56696 695 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 RAPGEF4Q8WZA2 1011 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 PCGF6Q9BYE7 350 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 GGNBP2Q9H3C7 697 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 CCNL1Q9UK58 526 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-212ENST00000597995 SHANK3Q9BYB0 1731 aa17.5■□□□□ 0.39
TRIM28-212ENST00000597995 SMG6Q86US8 1419 aaKnown RBP17.49■□□□□ 0.39
TRIM28-212ENST00000597995 GPR162Q16538 588 aa17.49■□□□□ 0.39
TRIM28-212ENST00000597995 CDCA8Q53HL2 280 aa17.49■□□□□ 0.39
TRIM28-212ENST00000597995 USP47Q96K76 1375 aa17.49■□□□□ 0.39
TRIM28-212ENST00000597995 TATP17735 454 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-212ENST00000597995 INSRP06213 1382 aa17.48■□□□□ 0.39
TRIM28-212ENST00000597995 KIF24Q5T7B8 1368 aa17.48■□□□□ 0.39
TRIM28-212ENST00000597995 HSP90AB2PQ58FF8 381 aa17.46■□□□□ 0.39
TRIM28-212ENST00000597995 KLHL34Q8N239 644 aa17.46■□□□□ 0.39
TRIM28-212ENST00000597995 USHBP1Q8N6Y0 703 aa17.46■□□□□ 0.39
TRIM28-212ENST00000597995 TUBGCP6Q96RT7 1819 aa17.46■□□□□ 0.39
TRIM28-212ENST00000597995 PCDH11XQ9BZA7 1347 aa17.45■□□□□ 0.38
TRIM28-212ENST00000597995 PCDH11YQ9BZA8 1340 aa17.45■□□□□ 0.38
TRIM28-212ENST00000597995 FLT4P35916 1363 aa17.44■□□□□ 0.38
TRIM28-212ENST00000597995 COL23A1Q86Y22 540 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-212ENST00000597995 FLAD1Q8NFF5 587 aa17.43■□□□□ 0.38
TRIM28-212ENST00000597995 CLSPNQ9HAW4 1339 aa17.43■□□□□ 0.38
TRIM28-212ENST00000597995 C1QTNF8P60827 252 aa17.42■□□□□ 0.38
TRIM28-212ENST00000597995 NLGN2Q8NFZ4 835 aa17.42■□□□□ 0.38
TRIM28-212ENST00000597995 MSH5O43196 834 aa17.41■□□□□ 0.38
TRIM28-212ENST00000597995 CARD14Q9BXL6 1004 aa17.41■□□□□ 0.38
TRIM28-212ENST00000597995 KIF20BQ96Q89 1820 aa17.4■□□□□ 0.38
TRIM28-212ENST00000597995 CYP27B1O15528 508 aa17.4■□□□□ 0.38
TRIM28-212ENST00000597995 GRIN3BO60391 1043 aa17.4■□□□□ 0.38
TRIM28-212ENST00000597995 PELP1Q8IZL8 1130 aaKnown RBP17.4■□□□□ 0.38
TRIM28-212ENST00000597995 SMARCC1Q92922 1105 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-212ENST00000597995 TIMELESSQ9UNS1 1208 aa17.4■□□□□ 0.38
TRIM28-212ENST00000597995 PALLDQ8WX93 1383 aa17.4■□□□□ 0.38
TRIM28-212ENST00000597995 MPRIPQ6WCQ1 1025 aa17.39■□□□□ 0.37
TRIM28-212ENST00000597995 GOLGB1Q14789 3259 aaKnown RBP17.39■□□□□ 0.37
TRIM28-212ENST00000597995 NKX1-1Q15270 411 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-212ENST00000597995 C5P01031 1676 aa17.37■□□□□ 0.37
TRIM28-212ENST00000597995 CD2APQ9Y5K6 639 aa17.37■□□□□ 0.37
TRIM28-212ENST00000597995 EMILIN1Q9Y6C2 1016 aa17.37■□□□□ 0.37
TRIM28-212ENST00000597995 NCAPD2Q15021 1401 aa17.37■□□□□ 0.37
TRIM28-212ENST00000597995 YBX3P16989 372 aaKnown RBP eCLIP17.36■□□□□ 0.37
TRIM28-212ENST00000597995 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.36■□□□□ 0.37
TRIM28-212ENST00000597995 SPG7Q9UQ90 795 aa17.36■□□□□ 0.37
TRIM28-212ENST00000597995 WASHC2AQ641Q2 1341 aa17.36■□□□□ 0.37
TRIM28-212ENST00000597995 NSD3Q9BZ95 1437 aa17.36■□□□□ 0.37
TRIM28-212ENST00000597995 TAF1LQ8IZX4 1826 aa17.35■□□□□ 0.37
TRIM28-212ENST00000597995 SENP3-EIF4A1A0A087X0R7 540 aa17.35■□□□□ 0.37
TRIM28-212ENST00000597995 MSL1Q68DK7 614 aa17.35■□□□□ 0.37
TRIM28-212ENST00000597995 GIGYF1O75420 1035 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-212ENST00000597995 PKD1L3Q7Z443 1732 aa17.34■□□□□ 0.37
TRIM28-212ENST00000597995 PIGBQ92521 554 aa17.34■□□□□ 0.37
TRIM28-212ENST00000597995 AK7Q96M32 723 aa17.34■□□□□ 0.37
TRIM28-212ENST00000597995 ITGB4P16144 1822 aa17.33■□□□□ 0.37
TRIM28-212ENST00000597995 PPM1GO15355 546 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-212ENST00000597995 EYA1Q99502 592 aa17.32■□□□□ 0.36
TRIM28-212ENST00000597995 C4BP0C0L5 1744 aa17.32■□□□□ 0.36
TRIM28-212ENST00000597995 TOGARAM1Q9Y4F4 1720 aa17.32■□□□□ 0.36
TRIM28-212ENST00000597995 ANKRD26Q9UPS8 1709 aa17.31■□□□□ 0.36
TRIM28-212ENST00000597995 CCER1Q8TC90 406 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-212ENST00000597995 LOC102724428A0A0B4J2F2 783 aa17.3■□□□□ 0.36
TRIM28-212ENST00000597995 SSFA2P28290 1259 aa17.3■□□□□ 0.36
TRIM28-212ENST00000597995 SIK1P57059 783 aa17.3■□□□□ 0.36
TRIM28-212ENST00000597995 POLKQ9UBT6 870 aa17.3■□□□□ 0.36
TRIM28-212ENST00000597995 MAP2P11137 1827 aaKnown RBP17.29■□□□□ 0.36
TRIM28-212ENST00000597995 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.29■□□□□ 0.36
TRIM28-212ENST00000597995 AMIGO3Q86WK7 504 aa17.29■□□□□ 0.36
TRIM28-212ENST00000597995 IFNL2Q8IZJ0 200 aa17.29■□□□□ 0.36
TRIM28-212ENST00000597995 TMOD3Q9NYL9 352 aa17.29■□□□□ 0.36
TRIM28-212ENST00000597995 PLEKHG2Q9H7P9 1386 aa17.28■□□□□ 0.36
TRIM28-212ENST00000597995 PHKG2P15735 406 aa17.28■□□□□ 0.36
TRIM28-212ENST00000597995 UBR3Q6ZT12 1888 aa17.28■□□□□ 0.36
TRIM28-212ENST00000597995 PHF14O94880 888 aa17.27■□□□□ 0.36
TRIM28-212ENST00000597995 LINC00116Q8NCU8 138 aa17.27■□□□□ 0.36
TRIM28-212ENST00000597995 ASAP1Q9ULH1 1129 aa17.26■□□□□ 0.35
TRIM28-212ENST00000597995 EIF4A2Q14240 407 aaKnown RBP17.25■□□□□ 0.35
TRIM28-212ENST00000597995 ATG3Q9NT62 314 aa17.25■□□□□ 0.35
TRIM28-212ENST00000597995 ATP10DQ9P241 1426 aa17.24■□□□□ 0.35
TRIM28-212ENST00000597995 ATP6V1AP38606 617 aa17.24■□□□□ 0.35
TRIM28-212ENST00000597995 ITPK1Q13572 414 aa17.24■□□□□ 0.35
TRIM28-212ENST00000597995 SMIM5Q71RC9 77 aa17.24■□□□□ 0.35
TRIM28-212ENST00000597995 IGSF1Q8N6C5 1336 aa17.23■□□□□ 0.35
TRIM28-212ENST00000597995 ERVV-2B6SEH9 535 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms