RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 ANKRD36BQ8N2N9 1353 aa23.25■■□□□ 1.31
SHKBP1-215ENST00000597649 POLD1P28340 1107 aa23.24■■□□□ 1.31
SHKBP1-215ENST00000597649 NLGN2Q8NFZ4 835 aa23.24■■□□□ 1.31
SHKBP1-215ENST00000597649 ZCRB1Q8TBF4 217 aaKnown RBP23.24■■□□□ 1.31
SHKBP1-215ENST00000597649 COG3Q96JB2 828 aa23.24■■□□□ 1.31
SHKBP1-215ENST00000597649 ST20-MTHFSA0A0A6YYL1 179 aa23.23■■□□□ 1.31
SHKBP1-215ENST00000597649 AMPHP49418 695 aa23.23■■□□□ 1.31
SHKBP1-215ENST00000597649 CEP350Q5VT06 3117 aa23.23■■□□□ 1.31
SHKBP1-215ENST00000597649 SENP3-EIF4A1A0A087X0R7 540 aa23.21■■□□□ 1.31
SHKBP1-215ENST00000597649 NBPF6Q5VWK0 638 aa23.21■■□□□ 1.31
SHKBP1-215ENST00000597649 NBPF4Q96M43 638 aa23.21■■□□□ 1.31
SHKBP1-215ENST00000597649 MEGF6O75095 1541 aa23.21■■□□□ 1.31
SHKBP1-215ENST00000597649 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-215ENST00000597649 COL24A1Q17RW2 1714 aa23.19■■□□□ 1.3
SHKBP1-215ENST00000597649 RRS1Q15050 365 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-215ENST00000597649 CCNL1Q9UK58 526 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-215ENST00000597649 FAM208AQ9UK61 1670 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-215ENST00000597649 COL23A1Q86Y22 540 aaPredicted RBP23.18■■□□□ 1.3
SHKBP1-215ENST00000597649 USHBP1Q8N6Y0 703 aa23.18■■□□□ 1.3
SHKBP1-215ENST00000597649 QSER1Q2KHR3 1735 aa23.18■■□□□ 1.3
SHKBP1-215ENST00000597649 TUBGCP6Q96RT7 1819 aa23.17■■□□□ 1.3
SHKBP1-215ENST00000597649 TONSLQ96HA7 1378 aa23.16■■□□□ 1.3
SHKBP1-215ENST00000597649 FYB1O15117 783 aa23.16■■□□□ 1.3
SHKBP1-215ENST00000597649 YBX3P16989 372 aaKnown RBP eCLIP23.16■■□□□ 1.3
SHKBP1-215ENST00000597649 RGPD2P0DJD1 1756 aa23.16■■□□□ 1.3
SHKBP1-215ENST00000597649 DOT1LQ8TEK3 1739 aa23.15■■□□□ 1.3
SHKBP1-215ENST00000597649 SHANK3Q9BYB0 1731 aa23.15■■□□□ 1.3
SHKBP1-215ENST00000597649 LY75O60449 1722 aa23.14■■□□□ 1.3
SHKBP1-215ENST00000597649 MSH5O43196 834 aa23.14■■□□□ 1.29
SHKBP1-215ENST00000597649 GGNBP2Q9H3C7 697 aa23.14■■□□□ 1.29
SHKBP1-215ENST00000597649 USP47Q96K76 1375 aa23.13■■□□□ 1.29
SHKBP1-215ENST00000597649 MSL1Q68DK7 614 aa23.12■■□□□ 1.29
SHKBP1-215ENST00000597649 GIGYF1O75420 1035 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-215ENST00000597649 RTL1A6NKG5 1358 aa23.11■■□□□ 1.29
SHKBP1-215ENST00000597649 CGNL1Q0VF96 1302 aa23.1■■□□□ 1.29
SHKBP1-215ENST00000597649 HSP90AB2PQ58FF8 381 aa23.1■■□□□ 1.29
SHKBP1-215ENST00000597649 RAPGEF4Q8WZA2 1011 aa23.09■■□□□ 1.29
SHKBP1-215ENST00000597649 GRIN3BO60391 1043 aa23.08■■□□□ 1.29
SHKBP1-215ENST00000597649 SLC24A1O60721 1099 aa23.08■■□□□ 1.29
SHKBP1-215ENST00000597649 TATP17735 454 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-215ENST00000597649 CYP27B1O15528 508 aa23.06■■□□□ 1.28
SHKBP1-215ENST00000597649 AMIGO3Q86WK7 504 aa23.06■■□□□ 1.28
SHKBP1-215ENST00000597649 INSRP06213 1382 aa23.05■■□□□ 1.28
SHKBP1-215ENST00000597649 MPRIPQ6WCQ1 1025 aa23.05■■□□□ 1.28
SHKBP1-215ENST00000597649 SMIM5Q71RC9 77 aa23.04■■□□□ 1.28
SHKBP1-215ENST00000597649 PALLDQ8WX93 1383 aa23.03■■□□□ 1.28
SHKBP1-215ENST00000597649 CD2APQ9Y5K6 639 aa23.03■■□□□ 1.28
SHKBP1-215ENST00000597649 PCDH11XQ9BZA7 1347 aa23.03■■□□□ 1.28
SHKBP1-215ENST00000597649 PCDH11YQ9BZA8 1340 aa23.03■■□□□ 1.28
SHKBP1-215ENST00000597649 TMF1P82094 1093 aa23.02■■□□□ 1.28
SHKBP1-215ENST00000597649 SMG6Q86US8 1419 aaKnown RBP23.01■■□□□ 1.27
SHKBP1-215ENST00000597649 CARD14Q9BXL6 1004 aa23.01■■□□□ 1.27
SHKBP1-215ENST00000597649 FLAD1Q8NFF5 587 aa23■■□□□ 1.27
SHKBP1-215ENST00000597649 PIGBQ92521 554 aa23■■□□□ 1.27
SHKBP1-215ENST00000597649 FLT4P35916 1363 aa23■■□□□ 1.27
SHKBP1-215ENST00000597649 EMILIN1Q9Y6C2 1016 aa22.99■■□□□ 1.27
SHKBP1-215ENST00000597649 C5P01031 1676 aa22.97■■□□□ 1.27
SHKBP1-215ENST00000597649 ATP10DQ9P241 1426 aa22.97■■□□□ 1.27
SHKBP1-215ENST00000597649 NKX1-1Q15270 411 aaPredicted RBP22.96■■□□□ 1.27
SHKBP1-215ENST00000597649 SMARCC1Q92922 1105 aaPredicted RBP22.96■■□□□ 1.27
SHKBP1-215ENST00000597649 KIF24Q5T7B8 1368 aa22.96■■□□□ 1.27
SHKBP1-215ENST00000597649 AK7Q96M32 723 aa22.95■■□□□ 1.26
SHKBP1-215ENST00000597649 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-215ENST00000597649 PHF14O94880 888 aa22.94■■□□□ 1.26
SHKBP1-215ENST00000597649 TAF1LQ8IZX4 1826 aa22.94■■□□□ 1.26
SHKBP1-215ENST00000597649 HMGB2P26583 209 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-215ENST00000597649 LINC00116Q8NCU8 138 aa22.93■■□□□ 1.26
SHKBP1-215ENST00000597649 WWC3Q9ULE0 1092 aa22.93■■□□□ 1.26
SHKBP1-215ENST00000597649 TOGARAM1Q9Y4F4 1720 aa22.93■■□□□ 1.26
SHKBP1-215ENST00000597649 C4BP0C0L5 1744 aa22.92■■□□□ 1.26
SHKBP1-215ENST00000597649 NCAPD2Q15021 1401 aa22.91■■□□□ 1.26
SHKBP1-215ENST00000597649 LOC102724428A0A0B4J2F2 783 aa22.91■■□□□ 1.26
SHKBP1-215ENST00000597649 PPM1GO15355 546 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-215ENST00000597649 SIK1P57059 783 aa22.91■■□□□ 1.26
SHKBP1-215ENST00000597649 ADCY9O60503 1353 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 IGSF1Q8N6C5 1336 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 ITGB4P16144 1822 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 ITPK1Q13572 414 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 EYA1Q99502 592 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 GPBP1L1Q9HC44 474 aaPredicted RBP22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 ASAP1Q9ULH1 1129 aa22.9■■□□□ 1.26
SHKBP1-215ENST00000597649 CDCA8Q53HL2 280 aa22.89■■□□□ 1.25
SHKBP1-215ENST00000597649 ZNF526Q8TF50 670 aaPredicted RBP22.89■■□□□ 1.25
SHKBP1-215ENST00000597649 SPG7Q9UQ90 795 aa22.89■■□□□ 1.25
SHKBP1-215ENST00000597649 NSD3Q9BZ95 1437 aa22.89■■□□□ 1.25
SHKBP1-215ENST00000597649 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
SHKBP1-215ENST00000597649 SSFA2P28290 1259 aa22.88■■□□□ 1.25
SHKBP1-215ENST00000597649 KIF20BQ96Q89 1820 aa22.87■■□□□ 1.25
SHKBP1-215ENST00000597649 MAP2P11137 1827 aaKnown RBP22.87■■□□□ 1.25
SHKBP1-215ENST00000597649 UBR3Q6ZT12 1888 aa22.86■■□□□ 1.25
SHKBP1-215ENST00000597649 PKD1L3Q7Z443 1732 aa22.86■■□□□ 1.25
SHKBP1-215ENST00000597649 IFFO2Q5TF58 517 aa22.86■■□□□ 1.25
SHKBP1-215ENST00000597649 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.86■■□□□ 1.25
SHKBP1-215ENST00000597649 TMOD3Q9NYL9 352 aa22.86■■□□□ 1.25
SHKBP1-215ENST00000597649 ATG3Q9NT62 314 aa22.85■■□□□ 1.25
SHKBP1-215ENST00000597649 POLKQ9UBT6 870 aa22.85■■□□□ 1.25
SHKBP1-215ENST00000597649 GNPATO15228 680 aa22.84■■□□□ 1.25
SHKBP1-215ENST00000597649 PHKG2P15735 406 aa22.84■■□□□ 1.25
SHKBP1-215ENST00000597649 ATP6V1AP38606 617 aa22.83■■□□□ 1.25
SHKBP1-215ENST00000597649 CCER1Q8TC90 406 aaPredicted RBP22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms