RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 IP6K1Q92551 441 aa14.45□□□□□ -0.1
TRIM28-210ENST00000597618 CCNL1Q9UK58 526 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-210ENST00000597618 MSH5O43196 834 aa14.44□□□□□ -0.1
TRIM28-210ENST00000597618 TMC1Q8TDI8 760 aa14.44□□□□□ -0.1
TRIM28-210ENST00000597618 LY75O60449 1722 aa14.44□□□□□ -0.1
TRIM28-210ENST00000597618 DOT1LQ8TEK3 1739 aa14.44□□□□□ -0.1
TRIM28-210ENST00000597618 LTV1Q96GA3 475 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-210ENST00000597618 GPBP1L1Q9HC44 474 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-210ENST00000597618 TERF2IPQ9NYB0 399 aa14.43□□□□□ -0.1
TRIM28-210ENST00000597618 COL23A1Q86Y22 540 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-210ENST00000597618 CD2APQ9Y5K6 639 aa14.42□□□□□ -0.1
TRIM28-210ENST00000597618 USP47Q96K76 1375 aa14.42□□□□□ -0.1
TRIM28-210ENST00000597618 HMGB2P26583 209 aaKnown RBP14.41□□□□□ -0.1
TRIM28-210ENST00000597618 ZCRB1Q8TBF4 217 aaKnown RBP14.41□□□□□ -0.1
TRIM28-210ENST00000597618 A0A1W2PP64 1363 aa14.41□□□□□ -0.1
TRIM28-210ENST00000597618 ADCY9O60503 1353 aa14.4□□□□□ -0.1
TRIM28-210ENST00000597618 HSPA6P17066 643 aa14.4□□□□□ -0.1
TRIM28-210ENST00000597618 MSL1Q68DK7 614 aa14.4□□□□□ -0.1
TRIM28-210ENST00000597618 SLC12A5Q9H2X9 1139 aa14.4□□□□□ -0.1
TRIM28-210ENST00000597618 MEGF6O75095 1541 aa14.4□□□□□ -0.1
TRIM28-210ENST00000597618 FLAD1Q8NFF5 587 aa14.39□□□□□ -0.11
TRIM28-210ENST00000597618 HOXC9P31274 260 aa14.38□□□□□ -0.11
TRIM28-210ENST00000597618 CGNL1Q0VF96 1302 aa14.38□□□□□ -0.11
TRIM28-210ENST00000597618 MAP3K19Q56UN5 1328 aa14.38□□□□□ -0.11
TRIM28-210ENST00000597618 AMPHP49418 695 aa14.37□□□□□ -0.11
TRIM28-210ENST00000597618 COG3Q96JB2 828 aa14.37□□□□□ -0.11
TRIM28-210ENST00000597618 SIN3AQ96ST3 1273 aa14.37□□□□□ -0.11
TRIM28-210ENST00000597618 CARD11Q9BXL7 1154 aa14.37□□□□□ -0.11
TRIM28-210ENST00000597618 RTL1A6NKG5 1358 aa14.36□□□□□ -0.11
TRIM28-210ENST00000597618 ZNF526Q8TF50 670 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-210ENST00000597618 PUS7Q96PZ0 661 aaKnown RBP14.36□□□□□ -0.11
TRIM28-210ENST00000597618 NEUROD1Q13562 356 aa14.35□□□□□ -0.11
TRIM28-210ENST00000597618 C5P01031 1676 aa14.35□□□□□ -0.11
TRIM28-210ENST00000597618 PALLDQ8WX93 1383 aa14.34□□□□□ -0.11
TRIM28-210ENST00000597618 SMG6Q86US8 1419 aaKnown RBP14.34□□□□□ -0.11
TRIM28-210ENST00000597618 RAPGEF4Q8WZA2 1011 aa14.34□□□□□ -0.11
TRIM28-210ENST00000597618 IGSF1Q8N6C5 1336 aa14.33□□□□□ -0.12
TRIM28-210ENST00000597618 PCDH11XQ9BZA7 1347 aa14.33□□□□□ -0.12
TRIM28-210ENST00000597618 PCDH11YQ9BZA8 1340 aa14.33□□□□□ -0.12
TRIM28-210ENST00000597618 NSD3Q9BZ95 1437 aa14.32□□□□□ -0.12
TRIM28-210ENST00000597618 NBPF6Q5VWK0 638 aa14.32□□□□□ -0.12
TRIM28-210ENST00000597618 AK7Q96M32 723 aa14.32□□□□□ -0.12
TRIM28-210ENST00000597618 NBPF4Q96M43 638 aa14.32□□□□□ -0.12
TRIM28-210ENST00000597618 TATP17735 454 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-210ENST00000597618 MPRIPQ6WCQ1 1025 aa14.3□□□□□ -0.12
TRIM28-210ENST00000597618 USHBP1Q8N6Y0 703 aa14.3□□□□□ -0.12
TRIM28-210ENST00000597618 SMARCC1Q92922 1105 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-210ENST00000597618 C4BP0C0L5 1744 aa14.29□□□□□ -0.12
TRIM28-210ENST00000597618 RGPD2P0DJD1 1756 aa14.29□□□□□ -0.12
TRIM28-210ENST00000597618 KIF3CO14782 793 aa14.29□□□□□ -0.12
TRIM28-210ENST00000597618 FBLN1P23142 703 aa14.29□□□□□ -0.12
TRIM28-210ENST00000597618 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.28□□□□□ -0.12
TRIM28-210ENST00000597618 PHF14O94880 888 aa14.28□□□□□ -0.12
TRIM28-210ENST00000597618 APLP1P51693 650 aa14.28□□□□□ -0.12
TRIM28-210ENST00000597618 RRS1Q15050 365 aaKnown RBP14.28□□□□□ -0.12
TRIM28-210ENST00000597618 TAF1LQ8IZX4 1826 aa14.28□□□□□ -0.12
TRIM28-210ENST00000597618 WWC3Q9ULE0 1092 aa14.28□□□□□ -0.12
TRIM28-210ENST00000597618 CICQ96RK0 1608 aaPredicted RBP14.27□□□□□ -0.12
TRIM28-210ENST00000597618 SSFA2P28290 1259 aa14.27□□□□□ -0.13
TRIM28-210ENST00000597618 AMIGO3Q86WK7 504 aa14.27□□□□□ -0.13
TRIM28-210ENST00000597618 TOGARAM1Q9Y4F4 1720 aa14.27□□□□□ -0.13
TRIM28-210ENST00000597618 INSRP06213 1382 aa14.26□□□□□ -0.13
TRIM28-210ENST00000597618 FLT4P35916 1363 aa14.25□□□□□ -0.13
TRIM28-210ENST00000597618 KIF24Q5T7B8 1368 aa14.25□□□□□ -0.13
TRIM28-210ENST00000597618 CYP27B1O15528 508 aa14.25□□□□□ -0.13
TRIM28-210ENST00000597618 SLC24A1O60721 1099 aa14.25□□□□□ -0.13
TRIM28-210ENST00000597618 TESK2Q96S53 571 aa14.24□□□□□ -0.13
TRIM28-210ENST00000597618 UBR3Q6ZT12 1888 aa14.24□□□□□ -0.13
TRIM28-210ENST00000597618 FYB1O15117 783 aa14.23□□□□□ -0.13
TRIM28-210ENST00000597618 TOMM70O94826 608 aa14.23□□□□□ -0.13
TRIM28-210ENST00000597618 HSP90AB2PQ58FF8 381 aa14.23□□□□□ -0.13
TRIM28-210ENST00000597618 PIGBQ92521 554 aa14.23□□□□□ -0.13
TRIM28-210ENST00000597618 GGNBP2Q9H3C7 697 aa14.23□□□□□ -0.13
TRIM28-210ENST00000597618 LOC102724428A0A0B4J2F2 783 aa14.22□□□□□ -0.13
TRIM28-210ENST00000597618 SIK1P57059 783 aa14.22□□□□□ -0.13
TRIM28-210ENST00000597618 SMIM5Q71RC9 77 aa14.22□□□□□ -0.13
TRIM28-210ENST00000597618 LINC00116Q8NCU8 138 aa14.22□□□□□ -0.13
TRIM28-210ENST00000597618 PXDNLA1KZ92 1463 aa14.22□□□□□ -0.13
TRIM28-210ENST00000597618 ST20-MTHFSA0A0A6YYL1 179 aa14.21□□□□□ -0.13
TRIM28-210ENST00000597618 GNPATO15228 680 aa14.21□□□□□ -0.13
TRIM28-210ENST00000597618 NKX1-1Q15270 411 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-210ENST00000597618 PKD1L3Q7Z443 1732 aa14.21□□□□□ -0.14
TRIM28-210ENST00000597618 TONSLQ96HA7 1378 aa14.21□□□□□ -0.14
TRIM28-210ENST00000597618 MMP10P09238 476 aa14.2□□□□□ -0.14
TRIM28-210ENST00000597618 TGFB2P61812 414 aa14.2□□□□□ -0.14
TRIM28-210ENST00000597618 DNAJC5GQ8N7S2 189 aa14.2□□□□□ -0.14
TRIM28-210ENST00000597618 ITGB4P16144 1822 aa14.2□□□□□ -0.14
TRIM28-210ENST00000597618 NCAPD2Q15021 1401 aa14.19□□□□□ -0.14
TRIM28-210ENST00000597618 TMOD3Q9NYL9 352 aa14.19□□□□□ -0.14
TRIM28-210ENST00000597618 SPG7Q9UQ90 795 aa14.19□□□□□ -0.14
TRIM28-210ENST00000597618 BCS1LQ9Y276 419 aa14.19□□□□□ -0.14
TRIM28-210ENST00000597618 MAP2P11137 1827 aaKnown RBP14.18□□□□□ -0.14
TRIM28-210ENST00000597618 C10orf71Q711Q0 1435 aa14.18□□□□□ -0.14
TRIM28-210ENST00000597618 PCNTO95613 3336 aa14.17□□□□□ -0.14
TRIM28-210ENST00000597618 ATP6V1AP38606 617 aa14.17□□□□□ -0.14
TRIM28-210ENST00000597618 ITPK1Q13572 414 aa14.17□□□□□ -0.14
TRIM28-210ENST00000597618 RBM46Q8TBY0 533 aaKnown RBP14.17□□□□□ -0.14
TRIM28-210ENST00000597618 NMRK2Q9NPI5 230 aa14.17□□□□□ -0.14
TRIM28-210ENST00000597618 KIF13BQ9NQT8 1826 aa14.17□□□□□ -0.14
TRIM28-210ENST00000597618 ARHGAP27Q6ZUM4 889 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms