RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 SRCAPQ6ZRS2 3230 aa26.48■■□□□ 1.83
SHKBP1-214ENST00000597396 DIAPH1O60610 1272 aaKnown RBP26.48■■□□□ 1.83
SHKBP1-214ENST00000597396 IL13P35225 146 aa26.48■■□□□ 1.83
SHKBP1-214ENST00000597396 RALBP1Q15311 655 aa26.48■■□□□ 1.83
SHKBP1-214ENST00000597396 COL3A1P02461 1466 aaPredicted RBP26.48■■□□□ 1.83
SHKBP1-214ENST00000597396 PKD1L3Q7Z443 1732 aa26.46■■□□□ 1.83
SHKBP1-214ENST00000597396 MARCH10Q8NA82 808 aaPredicted RBP26.46■■□□□ 1.83
SHKBP1-214ENST00000597396 ZCRB1Q8TBF4 217 aaKnown RBP26.46■■□□□ 1.83
SHKBP1-214ENST00000597396 DDX54Q8TDD1 881 aaKnown RBP26.43■■□□□ 1.82
SHKBP1-214ENST00000597396 TNS1Q9HBL0 1735 aaKnown RBP26.42■■□□□ 1.82
SHKBP1-214ENST00000597396 SULT6B1Q6IMI4 303 aa26.41■■□□□ 1.82
SHKBP1-214ENST00000597396 U2SURPO15042 1029 aaKnown RBP26.4■■□□□ 1.82
SHKBP1-214ENST00000597396 EN1Q05925 392 aaPredicted RBP26.4■■□□□ 1.82
SHKBP1-214ENST00000597396 AEBP1Q8IUX7 1158 aa26.4■■□□□ 1.82
SHKBP1-214ENST00000597396 TRIM37O94972 964 aa26.39■■□□□ 1.82
SHKBP1-214ENST00000597396 MYBBP1AQ9BQG0 1328 aaKnown RBP26.39■■□□□ 1.81
SHKBP1-214ENST00000597396 PCDH11XQ9BZA7 1347 aa26.39■■□□□ 1.81
SHKBP1-214ENST00000597396 PCDH11YQ9BZA8 1340 aa26.39■■□□□ 1.81
SHKBP1-214ENST00000597396 SPG7Q9UQ90 795 aa26.38■■□□□ 1.81
SHKBP1-214ENST00000597396 NUDCQ9Y266 331 aa26.38■■□□□ 1.81
SHKBP1-214ENST00000597396 BCL9O00512 1426 aa26.38■■□□□ 1.81
SHKBP1-214ENST00000597396 KDRP35968 1356 aa26.37■■□□□ 1.81
SHKBP1-214ENST00000597396 PRKRIP1Q9H875 184 aaPredicted RBP26.37■■□□□ 1.81
SHKBP1-214ENST00000597396 DOT1LQ8TEK3 1739 aa26.36■■□□□ 1.81
SHKBP1-214ENST00000597396 PLEKHG2Q9H7P9 1386 aa26.36■■□□□ 1.81
SHKBP1-214ENST00000597396 HMOX1P09601 288 aa26.36■■□□□ 1.81
SHKBP1-214ENST00000597396 NHSQ6T4R5 1651 aa26.35■■□□□ 1.81
SHKBP1-214ENST00000597396 PSDA5PKW4 1024 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-214ENST00000597396 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.35■■□□□ 1.81
SHKBP1-214ENST00000597396 PLEKHO1Q53GL0 409 aaPredicted RBP26.33■■□□□ 1.81
SHKBP1-214ENST00000597396 ACSBG1Q96GR2 724 aa26.32■■□□□ 1.8
SHKBP1-214ENST00000597396 CYP27B1O15528 508 aa26.3■■□□□ 1.8
SHKBP1-214ENST00000597396 AMOTQ4VCS5 1084 aa26.3■■□□□ 1.8
SHKBP1-214ENST00000597396 APBA3O96018 575 aa26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 U2AF1L5P0DN76 240 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 U2AF1Q01081 240 aaKnown RBP eCLIP26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 EZH2Q15910 746 aaKnown RBP26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 BCL11BQ9C0K0 894 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 BTAF1O14981 1849 aa26.29■■□□□ 1.8
SHKBP1-214ENST00000597396 IFNL2Q8IZJ0 200 aa26.28■■□□□ 1.8
SHKBP1-214ENST00000597396 ITGB4P16144 1822 aa26.28■■□□□ 1.8
SHKBP1-214ENST00000597396 ANP32CO43423 234 aa26.27■■□□□ 1.8
SHKBP1-214ENST00000597396 ZNF530Q6P9A1 599 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-214ENST00000597396 TOGARAM1Q9Y4F4 1720 aa26.27■■□□□ 1.8
SHKBP1-214ENST00000597396 VIRMAQ69YN4 1812 aaKnown RBP26.27■■□□□ 1.8
SHKBP1-214ENST00000597396 KCNQ2O43526 872 aa26.26■■□□□ 1.79
SHKBP1-214ENST00000597396 PHKG2P15735 406 aa26.25■■□□□ 1.79
SHKBP1-214ENST00000597396 R3HDM1Q15032 1099 aaKnown RBP26.25■■□□□ 1.79
SHKBP1-214ENST00000597396 SYTL4Q96C24 671 aaPredicted RBP26.25■■□□□ 1.79
SHKBP1-214ENST00000597396 C1orf141Q5JVX7 400 aa26.24■■□□□ 1.79
SHKBP1-214ENST00000597396 PTF1AQ7RTS3 328 aa26.24■■□□□ 1.79
SHKBP1-214ENST00000597396 CAMKK2Q96RR4 588 aa26.24■■□□□ 1.79
SHKBP1-214ENST00000597396 RGPD3A6NKT7 1758 aaPredicted RBP26.23■■□□□ 1.79
SHKBP1-214ENST00000597396 RGPD4Q7Z3J3 1758 aa26.23■■□□□ 1.79
SHKBP1-214ENST00000597396 LRP5O75197 1615 aa26.22■■□□□ 1.79
SHKBP1-214ENST00000597396 PRKAR2BP31323 418 aa26.22■■□□□ 1.79
SHKBP1-214ENST00000597396 PRIM1P49642 420 aaKnown RBP26.22■■□□□ 1.79
SHKBP1-214ENST00000597396 NKX1-1Q15270 411 aaPredicted RBP26.22■■□□□ 1.79
SHKBP1-214ENST00000597396 RSPH6AQ9H0K4 717 aa26.22■■□□□ 1.79
SHKBP1-214ENST00000597396 HSP90AB1P08238 724 aaKnown RBP26.21■■□□□ 1.79
SHKBP1-214ENST00000597396 FCHSD2O94868 740 aa26.2■■□□□ 1.78
SHKBP1-214ENST00000597396 SCN11AQ9UI33 1791 aa26.2■■□□□ 1.78
SHKBP1-214ENST00000597396 RREB1Q92766 1687 aa26.19■■□□□ 1.78
SHKBP1-214ENST00000597396 MTHFSDQ2M296 383 aaKnown RBP26.18■■□□□ 1.78
SHKBP1-214ENST00000597396 NEFMP07197 916 aa26.16■■□□□ 1.78
SHKBP1-214ENST00000597396 AKAP4Q5JQC9 854 aa26.16■■□□□ 1.78
SHKBP1-214ENST00000597396 GAS2L2Q8NHY3 880 aa26.16■■□□□ 1.78
SHKBP1-214ENST00000597396 DCAF5Q96JK2 942 aa26.16■■□□□ 1.78
SHKBP1-214ENST00000597396 PLSCR1O15162 318 aa26.15■■□□□ 1.78
SHKBP1-214ENST00000597396 WDR43Q15061 677 aaKnown RBP eCLIP26.15■■□□□ 1.78
SHKBP1-214ENST00000597396 MPRIPQ6WCQ1 1025 aa26.15■■□□□ 1.78
SHKBP1-214ENST00000597396 PNNQ9H307 717 aaKnown RBP26.14■■□□□ 1.78
SHKBP1-214ENST00000597396 NUP188Q5SRE5 1749 aa26.14■■□□□ 1.77
SHKBP1-214ENST00000597396 KDM6AO15550 1401 aaPredicted RBP26.14■■□□□ 1.77
SHKBP1-214ENST00000597396 PHACTR3Q96KR7 559 aa26.13■■□□□ 1.77
SHKBP1-214ENST00000597396 DLG5Q8TDM6 1919 aa26.12■■□□□ 1.77
SHKBP1-214ENST00000597396 TMOD3Q9NYL9 352 aa26.12■■□□□ 1.77
SHKBP1-214ENST00000597396 LY75O60449 1722 aa26.11■■□□□ 1.77
SHKBP1-214ENST00000597396 ERVV-2B6SEH9 535 aa26.1■■□□□ 1.77
SHKBP1-214ENST00000597396 NBPF14Q5TI25 921 aa26.1■■□□□ 1.77
SHKBP1-214ENST00000597396 MAP3K5Q99683 1374 aa26.09■■□□□ 1.77
SHKBP1-214ENST00000597396 MAPK8IP3Q9UPT6 1336 aa26.09■■□□□ 1.77
SHKBP1-214ENST00000597396 ADAMTS7Q9UKP4 1686 aa26.09■■□□□ 1.77
SHKBP1-214ENST00000597396 GNAT3A8MTJ3 354 aa26.08■■□□□ 1.77
SHKBP1-214ENST00000597396 CABP4P57796 275 aa26.08■■□□□ 1.77
SHKBP1-214ENST00000597396 PIGBQ92521 554 aa26.08■■□□□ 1.77
SHKBP1-214ENST00000597396 TXNRD1Q16881 649 aa26.07■■□□□ 1.76
SHKBP1-214ENST00000597396 RNMTO43148 476 aaKnown RBP26.06■■□□□ 1.76
SHKBP1-214ENST00000597396 CCDC184Q52MB2 194 aa26.06■■□□□ 1.76
SHKBP1-214ENST00000597396 PLEKHF1Q96S99 279 aa26.06■■□□□ 1.76
SHKBP1-214ENST00000597396 LGR6Q9HBX8 967 aa26.05■■□□□ 1.76
SHKBP1-214ENST00000597396 MRS2Q9HD23 443 aa26.05■■□□□ 1.76
SHKBP1-214ENST00000597396 SMARCC1Q92922 1105 aaPredicted RBP26.04■■□□□ 1.76
SHKBP1-214ENST00000597396 PROM2Q8N271 834 aa26.03■■□□□ 1.76
SHKBP1-214ENST00000597396 ADAMTS8Q9UP79 889 aa26.03■■□□□ 1.76
SHKBP1-214ENST00000597396 PALLDQ8WX93 1383 aa26.03■■□□□ 1.76
SHKBP1-214ENST00000597396 MRC1P22897 1456 aa26.02■■□□□ 1.76
SHKBP1-214ENST00000597396 CCDC146Q8IYE0 955 aa26.01■■□□□ 1.75
SHKBP1-214ENST00000597396 NFATC2IPQ8NCF5 419 aa26.01■■□□□ 1.75
SHKBP1-214ENST00000597396 RTF1Q92541 710 aaKnown RBP26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms