RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DIAPH1O60610 1272 aaKnown RBP20.16■□□□□ 0.82
TRIM28-207ENST00000597136 AEBP1Q8IUX7 1158 aa20.16■□□□□ 0.82
TRIM28-207ENST00000597136 RAPGEF4Q8WZA2 1011 aa20.14■□□□□ 0.81
TRIM28-207ENST00000597136 TATP17735 454 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-207ENST00000597136 UPF1Q92900 1129 aaKnown RBP eCLIP20.13■□□□□ 0.81
TRIM28-207ENST00000597136 OVOS2A0A0G2JMS6 1433 aa20.13■□□□□ 0.81
TRIM28-207ENST00000597136 TNS2Q63HR2 1409 aa20.13■□□□□ 0.81
TRIM28-207ENST00000597136 SULT6B1Q6IMI4 303 aa20.12■□□□□ 0.81
TRIM28-207ENST00000597136 HMOX1P09601 288 aa20.12■□□□□ 0.81
TRIM28-207ENST00000597136 ZCRB1Q8TBF4 217 aaKnown RBP20.12■□□□□ 0.81
TRIM28-207ENST00000597136 DDX54Q8TDD1 881 aaKnown RBP20.12■□□□□ 0.81
TRIM28-207ENST00000597136 CCER2I3L3R5 266 aa20.11■□□□□ 0.81
TRIM28-207ENST00000597136 CFAP53Q96M91 514 aa20.11■□□□□ 0.81
TRIM28-207ENST00000597136 ITGB4P16144 1822 aa20.11■□□□□ 0.81
TRIM28-207ENST00000597136 TNS1Q9HBL0 1735 aaKnown RBP20.1■□□□□ 0.81
TRIM28-207ENST00000597136 U2SURPO15042 1029 aaKnown RBP20.1■□□□□ 0.81
TRIM28-207ENST00000597136 FAM196AQ6ZSG2 479 aa20.08■□□□□ 0.81
TRIM28-207ENST00000597136 DOT1LQ8TEK3 1739 aa20.08■□□□□ 0.81
TRIM28-207ENST00000597136 KDRP35968 1356 aa20.08■□□□□ 0.81
TRIM28-207ENST00000597136 CCDC184Q52MB2 194 aa20.08■□□□□ 0.8
TRIM28-207ENST00000597136 PTF1AQ7RTS3 328 aa20.08■□□□□ 0.8
TRIM28-207ENST00000597136 CYP27B1O15528 508 aa20.06■□□□□ 0.8
TRIM28-207ENST00000597136 TRIM37O94972 964 aa20.06■□□□□ 0.8
TRIM28-207ENST00000597136 DLG5Q8TDM6 1919 aa20.06■□□□□ 0.8
TRIM28-207ENST00000597136 TOGARAM1Q9Y4F4 1720 aa20.05■□□□□ 0.8
TRIM28-207ENST00000597136 BTAF1O14981 1849 aa20.05■□□□□ 0.8
TRIM28-207ENST00000597136 MRS2Q9HD23 443 aa20.04■□□□□ 0.8
TRIM28-207ENST00000597136 ACSBG1Q96GR2 724 aa20.04■□□□□ 0.8
TRIM28-207ENST00000597136 NHSQ6T4R5 1651 aa20.03■□□□□ 0.8
TRIM28-207ENST00000597136 KCNQ2O43526 872 aa20.03■□□□□ 0.8
TRIM28-207ENST00000597136 U2AF1L5P0DN76 240 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-207ENST00000597136 U2AF1Q01081 240 aaKnown RBP eCLIP20.03■□□□□ 0.86e-7■□□□□ 9.2
TRIM28-207ENST00000597136 SPG7Q9UQ90 795 aa20.03■□□□□ 0.8
TRIM28-207ENST00000597136 NUDCQ9Y266 331 aa20.03■□□□□ 0.8
TRIM28-207ENST00000597136 SCN11AQ9UI33 1791 aa20.02■□□□□ 0.8
TRIM28-207ENST00000597136 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.01■□□□□ 0.79
TRIM28-207ENST00000597136 PCDH11XQ9BZA7 1347 aa20■□□□□ 0.79
TRIM28-207ENST00000597136 PCDH11YQ9BZA8 1340 aa20■□□□□ 0.79
TRIM28-207ENST00000597136 PLEKHO1Q53GL0 409 aaPredicted RBP20■□□□□ 0.79
TRIM28-207ENST00000597136 BCL9O00512 1426 aa20■□□□□ 0.79
TRIM28-207ENST00000597136 DEFB132Q7Z7B7 95 aa20■□□□□ 0.79
TRIM28-207ENST00000597136 RSPH6AQ9H0K4 717 aa20■□□□□ 0.79
TRIM28-207ENST00000597136 PHKG2P15735 406 aa19.99■□□□□ 0.79
TRIM28-207ENST00000597136 PHACTR3Q96KR7 559 aa19.99■□□□□ 0.79
TRIM28-207ENST00000597136 PRKAR2BP31323 418 aa19.98■□□□□ 0.79
TRIM28-207ENST00000597136 ZNF530Q6P9A1 599 aaPredicted RBP19.98■□□□□ 0.79
TRIM28-207ENST00000597136 CCDC125Q86Z20 511 aa19.98■□□□□ 0.79
TRIM28-207ENST00000597136 MTHFSDQ2M296 383 aaKnown RBP19.97■□□□□ 0.79
TRIM28-207ENST00000597136 AMOTQ4VCS5 1084 aa19.97■□□□□ 0.79
TRIM28-207ENST00000597136 IFNL2Q8IZJ0 200 aa19.97■□□□□ 0.79
TRIM28-207ENST00000597136 PRIM1P49642 420 aaKnown RBP19.96■□□□□ 0.79
TRIM28-207ENST00000597136 FCHSD2O94868 740 aa19.95■□□□□ 0.78
TRIM28-207ENST00000597136 APBA3O96018 575 aa19.95■□□□□ 0.78
TRIM28-207ENST00000597136 NKX1-1Q15270 411 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-207ENST00000597136 PNISRQ8TF01 805 aaKnown RBP19.95■□□□□ 0.78
TRIM28-207ENST00000597136 BCL11BQ9C0K0 894 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-207ENST00000597136 EN1Q05925 392 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-207ENST00000597136 SF3B2Q13435 895 aaKnown RBP19.95■□□□□ 0.78
TRIM28-207ENST00000597136 PLEKHG2Q9H7P9 1386 aa19.94■□□□□ 0.78
TRIM28-207ENST00000597136 SYTL4Q96C24 671 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-207ENST00000597136 MPRIPQ6WCQ1 1025 aa19.92■□□□□ 0.78
TRIM28-207ENST00000597136 PLEKHF1Q96S99 279 aa19.91■□□□□ 0.78
TRIM28-207ENST00000597136 ADAMTS8Q9UP79 889 aa19.91■□□□□ 0.78
TRIM28-207ENST00000597136 KDM6AO15550 1401 aaPredicted RBP19.91■□□□□ 0.78
TRIM28-207ENST00000597136 LY75O60449 1722 aa19.91■□□□□ 0.78
TRIM28-207ENST00000597136 C1orf141Q5JVX7 400 aa19.91■□□□□ 0.78
TRIM28-207ENST00000597136 LGR6Q9HBX8 967 aa19.91■□□□□ 0.78
TRIM28-207ENST00000597136 RGPD3A6NKT7 1758 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-207ENST00000597136 RGPD4Q7Z3J3 1758 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 RREB1Q92766 1687 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 ADAMTS7Q9UKP4 1686 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 BAG6P46379 1132 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 EZH2Q15910 746 aaKnown RBP19.9■□□□□ 0.78
TRIM28-207ENST00000597136 FAM9BQ8IZU0 186 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 CAMKK2Q96RR4 588 aa19.9■□□□□ 0.78
TRIM28-207ENST00000597136 SIPA1L3O60292 1781 aaPredicted RBP19.89■□□□□ 0.78
TRIM28-207ENST00000597136 AKAP4Q5JQC9 854 aa19.89■□□□□ 0.77
TRIM28-207ENST00000597136 NUP188Q5SRE5 1749 aa19.88■□□□□ 0.77
TRIM28-207ENST00000597136 WDR43Q15061 677 aaKnown RBP eCLIP19.88■□□□□ 0.77
TRIM28-207ENST00000597136 DCAF5Q96JK2 942 aa19.88■□□□□ 0.77
TRIM28-207ENST00000597136 CCDC146Q8IYE0 955 aa19.87■□□□□ 0.77
TRIM28-207ENST00000597136 PIGBQ92521 554 aa19.87■□□□□ 0.77
TRIM28-207ENST00000597136 TAF1LQ8IZX4 1826 aa19.87■□□□□ 0.77
TRIM28-207ENST00000597136 PROM2Q8N271 834 aa19.87■□□□□ 0.77
TRIM28-207ENST00000597136 PLSCR1O15162 318 aa19.86■□□□□ 0.77
TRIM28-207ENST00000597136 RNMTO43148 476 aaKnown RBP19.86■□□□□ 0.77
TRIM28-207ENST00000597136 HSP90AB1P08238 724 aaKnown RBP19.86■□□□□ 0.77
TRIM28-207ENST00000597136 GAS2L2Q8NHY3 880 aa19.86■□□□□ 0.77
TRIM28-207ENST00000597136 IL17REQ8NFR9 667 aa19.85■□□□□ 0.77
TRIM28-207ENST00000597136 GNAT3A8MTJ3 354 aa19.84■□□□□ 0.77
TRIM28-207ENST00000597136 ERVV-2B6SEH9 535 aa19.84■□□□□ 0.77
TRIM28-207ENST00000597136 NFATC2IPQ8NCF5 419 aa19.84■□□□□ 0.77
TRIM28-207ENST00000597136 MAP3K5Q99683 1374 aa19.84■□□□□ 0.77
TRIM28-207ENST00000597136 TMOD3Q9NYL9 352 aa19.83■□□□□ 0.77
TRIM28-207ENST00000597136 KCNQ4P56696 695 aa19.83■□□□□ 0.76
TRIM28-207ENST00000597136 ASAP1Q9ULH1 1129 aa19.83■□□□□ 0.76
TRIM28-207ENST00000597136 CABP4P57796 275 aa19.82■□□□□ 0.76
TRIM28-207ENST00000597136 DCTN1Q14203 1278 aa19.82■□□□□ 0.76
TRIM28-207ENST00000597136 PNNQ9H307 717 aaKnown RBP19.82■□□□□ 0.76
TRIM28-207ENST00000597136 MAPK8IP3Q9UPT6 1336 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms