RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 AEBP1Q8IUX7 1158 aa19.28■□□□□ 0.68
LIG1-208ENST00000595758 MYBBP1AQ9BQG0 1328 aaKnown RBP19.27■□□□□ 0.68
LIG1-208ENST00000595758 U2SURPO15042 1029 aaKnown RBP19.27■□□□□ 0.68
LIG1-208ENST00000595758 NUDCQ9Y266 331 aa19.27■□□□□ 0.68
LIG1-208ENST00000595758 CCDC125Q86Z20 511 aa19.26■□□□□ 0.67
LIG1-208ENST00000595758 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.25■□□□□ 0.67
LIG1-208ENST00000595758 SPG7Q9UQ90 795 aa19.25■□□□□ 0.67
LIG1-208ENST00000595758 KDRP35968 1356 aa19.24■□□□□ 0.67
LIG1-208ENST00000595758 HMOX1P09601 288 aa19.24■□□□□ 0.67
LIG1-208ENST00000595758 RGPD1P0DJD0 1748 aa19.24■□□□□ 0.67
LIG1-208ENST00000595758 TRIM37O94972 964 aa19.23■□□□□ 0.67
LIG1-208ENST00000595758 PCDH11XQ9BZA7 1347 aa19.23■□□□□ 0.67
LIG1-208ENST00000595758 PCDH11YQ9BZA8 1340 aa19.23■□□□□ 0.67
LIG1-208ENST00000595758 SF3B2Q13435 895 aaKnown RBP19.22■□□□□ 0.67
LIG1-208ENST00000595758 PLEKHO1Q53GL0 409 aaPredicted RBP19.22■□□□□ 0.67
LIG1-208ENST00000595758 BCL9O00512 1426 aa19.22■□□□□ 0.67
LIG1-208ENST00000595758 PLEKHG2Q9H7P9 1386 aa19.21■□□□□ 0.67
LIG1-208ENST00000595758 CYP27B1O15528 508 aa19.21■□□□□ 0.67
LIG1-208ENST00000595758 ANP32CO43423 234 aa19.21■□□□□ 0.67
LIG1-208ENST00000595758 U2AF1L5P0DN76 240 aaPredicted RBP19.21■□□□□ 0.67
LIG1-208ENST00000595758 U2AF1Q01081 240 aaKnown RBP eCLIP19.21■□□□□ 0.67
LIG1-208ENST00000595758 EP400Q96L91 3159 aa19.2■□□□□ 0.66
LIG1-208ENST00000595758 AMOTQ4VCS5 1084 aa19.2■□□□□ 0.66
LIG1-208ENST00000595758 ACSBG1Q96GR2 724 aa19.18■□□□□ 0.66
LIG1-208ENST00000595758 BCL11BQ9C0K0 894 aaPredicted RBP19.18■□□□□ 0.66
LIG1-208ENST00000595758 PKD1L3Q7Z443 1732 aa19.17■□□□□ 0.66
LIG1-208ENST00000595758 ZNF530Q6P9A1 599 aaPredicted RBP19.17■□□□□ 0.66
LIG1-208ENST00000595758 IFNL2Q8IZJ0 200 aa19.17■□□□□ 0.66
LIG1-208ENST00000595758 SHANK3Q9BYB0 1731 aa19.17■□□□□ 0.66
LIG1-208ENST00000595758 KCNQ2O43526 872 aa19.16■□□□□ 0.66
LIG1-208ENST00000595758 APBA3O96018 575 aa19.16■□□□□ 0.66
LIG1-208ENST00000595758 PHKG2P15735 406 aa19.16■□□□□ 0.66
LIG1-208ENST00000595758 PTF1AQ7RTS3 328 aa19.16■□□□□ 0.66
LIG1-208ENST00000595758 FCHSD2O94868 740 aa19.15■□□□□ 0.66
LIG1-208ENST00000595758 PRKAR2BP31323 418 aa19.15■□□□□ 0.66
LIG1-208ENST00000595758 BAG6P46379 1132 aa19.15■□□□□ 0.66
LIG1-208ENST00000595758 NKX1-1Q15270 411 aaPredicted RBP19.15■□□□□ 0.66
LIG1-208ENST00000595758 RSPH6AQ9H0K4 717 aa19.15■□□□□ 0.66
LIG1-208ENST00000595758 PRIM1P49642 420 aaKnown RBP19.14■□□□□ 0.65
LIG1-208ENST00000595758 C1orf141Q5JVX7 400 aa19.14■□□□□ 0.65
LIG1-208ENST00000595758 DEFB132Q7Z7B7 95 aa19.14■□□□□ 0.65
LIG1-208ENST00000595758 KAT6BQ8WYB5 2073 aa19.13■□□□□ 0.65
LIG1-208ENST00000595758 HSP90AB1P08238 724 aaKnown RBP19.13■□□□□ 0.65
LIG1-208ENST00000595758 SYTL4Q96C24 671 aaPredicted RBP19.13■□□□□ 0.65
LIG1-208ENST00000595758 SBF2Q86WG5 1849 aa19.13■□□□□ 0.65
LIG1-208ENST00000595758 MTHFSDQ2M296 383 aaKnown RBP19.12■□□□□ 0.65
LIG1-208ENST00000595758 EN1Q05925 392 aaPredicted RBP19.11■□□□□ 0.65
LIG1-208ENST00000595758 PHACTR3Q96KR7 559 aa19.11■□□□□ 0.65
LIG1-208ENST00000595758 WDR43Q15061 677 aaKnown RBP eCLIP19.1■□□□□ 0.65
LIG1-208ENST00000595758 AKAP4Q5JQC9 854 aa19.1■□□□□ 0.65
LIG1-208ENST00000595758 DCAF5Q96JK2 942 aa19.1■□□□□ 0.65
LIG1-208ENST00000595758 TNS1Q9HBL0 1735 aaKnown RBP19.1■□□□□ 0.65
LIG1-208ENST00000595758 GAS2L2Q8NHY3 880 aa19.09■□□□□ 0.65
LIG1-208ENST00000595758 PNNQ9H307 717 aaKnown RBP19.09■□□□□ 0.65
LIG1-208ENST00000595758 NHSQ6T4R5 1651 aa19.08■□□□□ 0.65
LIG1-208ENST00000595758 NEFMP07197 916 aa19.08■□□□□ 0.64
LIG1-208ENST00000595758 MPRIPQ6WCQ1 1025 aa19.08■□□□□ 0.64
LIG1-208ENST00000595758 CAMKK2Q96RR4 588 aa19.08■□□□□ 0.64
LIG1-208ENST00000595758 PLSCR1O15162 318 aa19.07■□□□□ 0.64
LIG1-208ENST00000595758 CCDC184Q52MB2 194 aa19.07■□□□□ 0.64
LIG1-208ENST00000595758 DOT1LQ8TEK3 1739 aa19.06■□□□□ 0.64
LIG1-208ENST00000595758 ERVV-2B6SEH9 535 aa19.06■□□□□ 0.64
LIG1-208ENST00000595758 EZH2Q15910 746 aaKnown RBP19.06■□□□□ 0.64
LIG1-208ENST00000595758 PLEKHF1Q96S99 279 aa19.06■□□□□ 0.64
LIG1-208ENST00000595758 MRS2Q9HD23 443 aa19.05■□□□□ 0.64
LIG1-208ENST00000595758 TMOD3Q9NYL9 352 aa19.05■□□□□ 0.64
LIG1-208ENST00000595758 ADAMTS8Q9UP79 889 aa19.05■□□□□ 0.64
LIG1-208ENST00000595758 GNAT3A8MTJ3 354 aa19.04■□□□□ 0.64
LIG1-208ENST00000595758 KDM6AO15550 1401 aaPredicted RBP19.04■□□□□ 0.64
LIG1-208ENST00000595758 PIGBQ92521 554 aa19.04■□□□□ 0.64
LIG1-208ENST00000595758 MAPK8IP3Q9UPT6 1336 aa19.03■□□□□ 0.64
LIG1-208ENST00000595758 CABP4P57796 275 aa19.03■□□□□ 0.64
LIG1-208ENST00000595758 LGR6Q9HBX8 967 aa19.03■□□□□ 0.64
LIG1-208ENST00000595758 MAP3K5Q99683 1374 aa19.03■□□□□ 0.64
LIG1-208ENST00000595758 TOGARAM1Q9Y4F4 1720 aa19.03■□□□□ 0.64
LIG1-208ENST00000595758 BTAF1O14981 1849 aa19.02■□□□□ 0.64
LIG1-208ENST00000595758 RNMTO43148 476 aaKnown RBP19.02■□□□□ 0.64
LIG1-208ENST00000595758 DIEXFQ68CQ4 756 aaKnown RBP19.02■□□□□ 0.64
LIG1-208ENST00000595758 TXNRD1Q16881 649 aa19■□□□□ 0.63
LIG1-208ENST00000595758 CCDC146Q8IYE0 955 aa19■□□□□ 0.63
LIG1-208ENST00000595758 PROM2Q8N271 834 aa19■□□□□ 0.63
LIG1-208ENST00000595758 NFATC2IPQ8NCF5 419 aa19■□□□□ 0.63
LIG1-208ENST00000595758 PNISRQ8TF01 805 aaKnown RBP19■□□□□ 0.63
LIG1-208ENST00000595758 SMARCC1Q92922 1105 aaPredicted RBP19■□□□□ 0.63
LIG1-208ENST00000595758 NFE2L2Q16236 605 aa18.99■□□□□ 0.63
LIG1-208ENST00000595758 IL17REQ8NFR9 667 aa18.99■□□□□ 0.63
LIG1-208ENST00000595758 RTF1Q92541 710 aaKnown RBP18.99■□□□□ 0.63
LIG1-208ENST00000595758 RUNDC1Q96C34 613 aa18.99■□□□□ 0.63
LIG1-208ENST00000595758 ITGB4P16144 1822 aa18.99■□□□□ 0.63
LIG1-208ENST00000595758 HTATSF1O43719 755 aaKnown RBP18.98■□□□□ 0.63
LIG1-208ENST00000595758 SLC52A2Q9HAB3 445 aa18.98■□□□□ 0.63
LIG1-208ENST00000595758 ASAP1Q9ULH1 1129 aa18.98■□□□□ 0.63
LIG1-208ENST00000595758 RGPD3A6NKT7 1758 aaPredicted RBP18.97■□□□□ 0.63
LIG1-208ENST00000595758 RGPD4Q7Z3J3 1758 aa18.97■□□□□ 0.63
LIG1-208ENST00000595758 ATG3Q9NT62 314 aa18.97■□□□□ 0.63
LIG1-208ENST00000595758 SCN11AQ9UI33 1791 aa18.96■□□□□ 0.63
LIG1-208ENST00000595758 PALLDQ8WX93 1383 aa18.96■□□□□ 0.63
LIG1-208ENST00000595758 TEFQ10587 303 aa18.96■□□□□ 0.63
LIG1-208ENST00000595758 SLC27A3Q5K4L6 730 aa18.96■□□□□ 0.63
LIG1-208ENST00000595758 TMPOP42166 694 aaKnown RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms