RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CHMP4BQ9H444 224 aaKnown RBP24.95■■□□□ 1.59
CLIP3-206ENST00000593074 LRRC37A3O60309 1634 aa24.95■■□□□ 1.58
CLIP3-206ENST00000593074 HAP1P54257 671 aaPredicted RBP24.95■■□□□ 1.58
CLIP3-206ENST00000593074 KCNH5Q8NCM2 988 aa24.95■■□□□ 1.58
CLIP3-206ENST00000593074 MTHFSDQ2M296 383 aaKnown RBP24.94■■□□□ 1.58
CLIP3-206ENST00000593074 NFAT5O94916 1531 aa24.93■■□□□ 1.58
CLIP3-206ENST00000593074 ZBTB7BO15156 539 aaPredicted RBP24.93■■□□□ 1.58
CLIP3-206ENST00000593074 LTN1O94822 1766 aa24.92■■□□□ 1.58
CLIP3-206ENST00000593074 GAS2L2Q8NHY3 880 aa24.92■■□□□ 1.58
CLIP3-206ENST00000593074 IP6K1Q92551 441 aa24.92■■□□□ 1.58
CLIP3-206ENST00000593074 API5Q9BZZ5 524 aaKnown RBP24.92■■□□□ 1.58
CLIP3-206ENST00000593074 RTF1Q92541 710 aaKnown RBP24.91■■□□□ 1.58
CLIP3-206ENST00000593074 LTV1Q96GA3 475 aaPredicted RBP24.91■■□□□ 1.58
CLIP3-206ENST00000593074 XPCQ01831 940 aaPredicted RBP24.9■■□□□ 1.58
CLIP3-206ENST00000593074 PHRF1Q9P1Y6 1649 aaKnown RBP24.9■■□□□ 1.58
CLIP3-206ENST00000593074 C1orf167Q5SNV9 1468 aa24.89■■□□□ 1.57
CLIP3-206ENST00000593074 USP19O94966 1318 aa24.89■■□□□ 1.57
CLIP3-206ENST00000593074 KRT28Q7Z3Y7 464 aa24.89■■□□□ 1.57
CLIP3-206ENST00000593074 ATF3P18847 181 aa24.88■■□□□ 1.57
CLIP3-206ENST00000593074 HTATSF1O43719 755 aaKnown RBP24.87■■□□□ 1.57
CLIP3-206ENST00000593074 KRT24Q2M2I5 525 aa24.87■■□□□ 1.57
CLIP3-206ENST00000593074 RGS12O14924 1447 aa24.87■■□□□ 1.57
CLIP3-206ENST00000593074 HSPA2P54652 639 aa24.87■■□□□ 1.57
CLIP3-206ENST00000593074 TMEM94Q12767 1356 aa24.86■■□□□ 1.57
CLIP3-206ENST00000593074 NCOA3Q9Y6Q9 1424 aa24.85■■□□□ 1.57
CLIP3-206ENST00000593074 GCP02774 474 aa24.85■■□□□ 1.57
CLIP3-206ENST00000593074 LMOD2Q6P5Q4 547 aa24.85■■□□□ 1.57
CLIP3-206ENST00000593074 NUCB1Q02818 461 aa24.84■■□□□ 1.57
CLIP3-206ENST00000593074 ZBTB7CA1YPR0 619 aa24.84■■□□□ 1.57
CLIP3-206ENST00000593074 SEC24BO95487 1268 aa24.84■■□□□ 1.57
CLIP3-206ENST00000593074 INTS3Q68E01 1043 aaKnown RBP24.82■■□□□ 1.56
CLIP3-206ENST00000593074 GNAT3A8MTJ3 354 aa24.82■■□□□ 1.56
CLIP3-206ENST00000593074 TSPYL4Q9UJ04 414 aa24.82■■□□□ 1.56
CLIP3-206ENST00000593074 PTPRCP08575 1304 aa24.82■■□□□ 1.56
CLIP3-206ENST00000593074 KIF1AQ12756 1690 aa24.81■■□□□ 1.56
CLIP3-206ENST00000593074 MAP3K5Q99683 1374 aa24.81■■□□□ 1.56
CLIP3-206ENST00000593074 ARHGEF25Q86VW2 580 aa24.81■■□□□ 1.56
CLIP3-206ENST00000593074 SLIT3O75094 1523 aa24.8■■□□□ 1.56
CLIP3-206ENST00000593074 MSH6P52701 1360 aa24.8■■□□□ 1.56
CLIP3-206ENST00000593074 DCCP43146 1447 aa24.8■■□□□ 1.56
CLIP3-206ENST00000593074 GCC1Q96CN9 775 aa24.8■■□□□ 1.56
CLIP3-206ENST00000593074 USHBP1Q8N6Y0 703 aa24.79■■□□□ 1.56
CLIP3-206ENST00000593074 TRPM3Q9HCF6 1732 aaPredicted RBP24.79■■□□□ 1.56
CLIP3-206ENST00000593074 MST1RQ04912 1400 aa24.79■■□□□ 1.56
CLIP3-206ENST00000593074 NBPF6Q5VWK0 638 aa24.79■■□□□ 1.56
CLIP3-206ENST00000593074 NBPF4Q96M43 638 aa24.79■■□□□ 1.56
CLIP3-206ENST00000593074 C1orf115Q9H7X2 142 aa24.79■■□□□ 1.56
CLIP3-206ENST00000593074 CADPS2Q86UW7 1296 aa24.78■■□□□ 1.56
CLIP3-206ENST00000593074 MIS18AQ9NYP9 233 aa24.78■■□□□ 1.56
CLIP3-206ENST00000593074 PLEKHG5O94827 1062 aa24.77■■□□□ 1.56
CLIP3-206ENST00000593074 CHD1LQ86WJ1 897 aa24.77■■□□□ 1.56
CLIP3-206ENST00000593074 SIRT2Q8IXJ6 389 aa24.77■■□□□ 1.56
CLIP3-206ENST00000593074 STRCP1A6NGW2 1772 aa24.77■■□□□ 1.56
CLIP3-206ENST00000593074 NBR1Q14596 966 aa24.76■■□□□ 1.55
CLIP3-206ENST00000593074 FAM208AQ9UK61 1670 aaKnown RBP24.75■■□□□ 1.55
CLIP3-206ENST00000593074 KDM4FA0A1W2PPD8 638 aa24.75■■□□□ 1.55
CLIP3-206ENST00000593074 UPF2Q9HAU5 1272 aaKnown RBP24.74■■□□□ 1.55
CLIP3-206ENST00000593074 BABAM1Q9NWV8 329 aa24.74■■□□□ 1.55
CLIP3-206ENST00000593074 TBC1D32Q96NH3 1257 aa24.73■■□□□ 1.55
CLIP3-206ENST00000593074 LNPKQ9C0E8 428 aa24.73■■□□□ 1.55
CLIP3-206ENST00000593074 DAXXQ9UER7 740 aaPredicted RBP24.73■■□□□ 1.55
CLIP3-206ENST00000593074 ATP10DQ9P241 1426 aa24.73■■□□□ 1.55
CLIP3-206ENST00000593074 MED1Q15648 1581 aaPredicted RBP24.73■■□□□ 1.55
CLIP3-206ENST00000593074 SLC4A2P04920 1241 aa24.73■■□□□ 1.55
CLIP3-206ENST00000593074 IL17REQ8NFR9 667 aa24.73■■□□□ 1.55
CLIP3-206ENST00000593074 NCAPD2Q15021 1401 aa24.72■■□□□ 1.55
CLIP3-206ENST00000593074 SOS1Q07889 1333 aaPredicted RBP24.72■■□□□ 1.55
CLIP3-206ENST00000593074 LRRC59Q96AG4 307 aaKnown RBP24.71■■□□□ 1.55
CLIP3-206ENST00000593074 SLC4A3P48751 1232 aa24.71■■□□□ 1.55
CLIP3-206ENST00000593074 CEMIPQ8WUJ3 1361 aa24.71■■□□□ 1.55
CLIP3-206ENST00000593074 RGPD2P0DJD1 1756 aa24.7■■□□□ 1.55
CLIP3-206ENST00000593074 ANKRD24Q8TF21 1146 aa24.7■■□□□ 1.54
CLIP3-206ENST00000593074 NPHP3Q7Z494 1330 aa24.7■■□□□ 1.54
CLIP3-206ENST00000593074 TAF7Q15545 349 aaPredicted RBP24.7■■□□□ 1.54
CLIP3-206ENST00000593074 CAMTA1Q9Y6Y1 1673 aa24.69■■□□□ 1.54
CLIP3-206ENST00000593074 DDX17Q92841 729 aaKnown RBP24.69■■□□□ 1.54
CLIP3-206ENST00000593074 LMO7Q8WWI1 1683 aa24.69■■□□□ 1.54
CLIP3-206ENST00000593074 ANKRD45Q5TZF3 282 aa24.68■■□□□ 1.54
CLIP3-206ENST00000593074 ALS2Q96Q42 1657 aa24.67■■□□□ 1.54
CLIP3-206ENST00000593074 LMTK3Q96Q04 1460 aa24.67■■□□□ 1.54
CLIP3-206ENST00000593074 PLEKHO1Q53GL0 409 aaPredicted RBP24.67■■□□□ 1.54
CLIP3-206ENST00000593074 ANKRD44Q8N8A2 993 aa24.66■■□□□ 1.54
CLIP3-206ENST00000593074 AXIN2Q9Y2T1 843 aa24.66■■□□□ 1.54
CLIP3-206ENST00000593074 CACNA1FO60840 1977 aa24.66■■□□□ 1.54
CLIP3-206ENST00000593074 ZC3H6P61129 1189 aaKnown RBP24.66■■□□□ 1.54
CLIP3-206ENST00000593074 BMP2KLQ5H9B9 411 aa24.66■■□□□ 1.54
CLIP3-206ENST00000593074 G2E3Q7L622 706 aa24.66■■□□□ 1.54
CLIP3-206ENST00000593074 AMOTQ4VCS5 1084 aa24.65■■□□□ 1.54
CLIP3-206ENST00000593074 STK31Q9BXU1 1019 aa24.65■■□□□ 1.54
CLIP3-206ENST00000593074 CCDC30Q5VVM6 783 aa24.65■■□□□ 1.54
CLIP3-206ENST00000593074 RPAP2Q8IXW5 612 aaPredicted RBP24.65■■□□□ 1.54
CLIP3-206ENST00000593074 N4BP2Q86UW6 1770 aaPredicted RBP24.64■■□□□ 1.54
CLIP3-206ENST00000593074 DCTPP1Q9H773 170 aa24.64■■□□□ 1.53
CLIP3-206ENST00000593074 CCT4P50991 539 aaKnown RBP24.63■■□□□ 1.53
CLIP3-206ENST00000593074 CEP85Q6P2H3 762 aa24.63■■□□□ 1.53
CLIP3-206ENST00000593074 KDM3BQ7LBC6 1761 aa24.63■■□□□ 1.53
CLIP3-206ENST00000593074 AKAP4Q5JQC9 854 aa24.63■■□□□ 1.53
CLIP3-206ENST00000593074 MEIS3Q99687 375 aa24.63■■□□□ 1.53
CLIP3-206ENST00000593074 RTL5Q5HYW3 569 aaPredicted RBP24.62■■□□□ 1.53
CLIP3-206ENST00000593074 ZNF530Q6P9A1 599 aaPredicted RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms