RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 AMPHP49418 695 aa12.36□□□□□ -0.43
VPS25-205ENST00000590339 SLFN5Q08AF3 891 aa12.36□□□□□ -0.43
VPS25-205ENST00000590339 CCDC27Q2M243 656 aa12.36□□□□□ -0.43
VPS25-205ENST00000590339 RCAN3Q9UKA8 241 aa12.36□□□□□ -0.43
VPS25-205ENST00000590339 DIAPH1O60610 1272 aaKnown RBP12.35□□□□□ -0.43
VPS25-205ENST00000590339 RRP1P56182 461 aaKnown RBP12.35□□□□□ -0.43
VPS25-205ENST00000590339 MARCH10Q8NA82 808 aaPredicted RBP12.35□□□□□ -0.43
VPS25-205ENST00000590339 IP6K1Q92551 441 aa12.35□□□□□ -0.43
VPS25-205ENST00000590339 PLEKHF1Q96S99 279 aa12.35□□□□□ -0.43
VPS25-205ENST00000590339 CDCA7Q9BWT1 371 aaPredicted RBP12.35□□□□□ -0.43
VPS25-205ENST00000590339 U2AF1L5P0DN76 240 aaPredicted RBP12.34□□□□□ -0.43
VPS25-205ENST00000590339 IRX6P78412 446 aaPredicted RBP12.34□□□□□ -0.43
VPS25-205ENST00000590339 U2AF1Q01081 240 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS25-205ENST00000590339 RRS1Q15050 365 aaKnown RBP12.34□□□□□ -0.43
VPS25-205ENST00000590339 CAMKK2Q96RR4 588 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 EMILIN1Q9Y6C2 1016 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 THSD7AQ9UPZ6 1657 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 EP400Q96L91 3159 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 ERBB3P21860 1342 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 MAP3K19Q56UN5 1328 aa12.34□□□□□ -0.43
VPS25-205ENST00000590339 NFAT5O94916 1531 aa12.33□□□□□ -0.44
VPS25-205ENST00000590339 E9PSI1 815 aa12.33□□□□□ -0.44
VPS25-205ENST00000590339 R3HDM1Q15032 1099 aaKnown RBP12.33□□□□□ -0.44
VPS25-205ENST00000590339 PTF1AQ7RTS3 328 aa12.33□□□□□ -0.44
VPS25-205ENST00000590339 WWC1Q8IX03 1113 aa12.33□□□□□ -0.44
VPS25-205ENST00000590339 DLG5Q8TDM6 1919 aa12.33□□□□□ -0.44
VPS25-205ENST00000590339 IL2RBP14784 551 aa12.32□□□□□ -0.44
VPS25-205ENST00000590339 HOXC9P31274 260 aa12.32□□□□□ -0.44
VPS25-205ENST00000590339 IL13P35225 146 aa12.32□□□□□ -0.44
VPS25-205ENST00000590339 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
VPS25-205ENST00000590339 LTN1O94822 1766 aa12.32□□□□□ -0.44
VPS25-205ENST00000590339 WDR63Q8IWG1 891 aa12.31□□□□□ -0.44
VPS25-205ENST00000590339 RSPH6AQ9H0K4 717 aa12.31□□□□□ -0.44
VPS25-205ENST00000590339 PPP4R2Q9NY27 417 aa12.31□□□□□ -0.44
VPS25-205ENST00000590339 KIF24Q5T7B8 1368 aa12.3□□□□□ -0.44
VPS25-205ENST00000590339 COL18A1P39060 1754 aa12.3□□□□□ -0.44
VPS25-205ENST00000590339 U2SURPO15042 1029 aaKnown RBP12.3□□□□□ -0.44
VPS25-205ENST00000590339 DDX54Q8TDD1 881 aaKnown RBP12.3□□□□□ -0.44
VPS25-205ENST00000590339 ACSBG1Q96GR2 724 aa12.3□□□□□ -0.44
VPS25-205ENST00000590339 PPM1GO15355 546 aaPredicted RBP12.29□□□□□ -0.44
VPS25-205ENST00000590339 KCNQ2O43526 872 aa12.29□□□□□ -0.44
VPS25-205ENST00000590339 FCHSD2O94868 740 aa12.29□□□□□ -0.44
VPS25-205ENST00000590339 BCL11BQ9C0K0 894 aaPredicted RBP12.29□□□□□ -0.44
VPS25-205ENST00000590339 PNNQ9H307 717 aaKnown RBP12.29□□□□□ -0.44
VPS25-205ENST00000590339 FLT4P35916 1363 aa12.29□□□□□ -0.44
VPS25-205ENST00000590339 OVOS2A0A0G2JMS6 1433 aa12.28□□□□□ -0.44
VPS25-205ENST00000590339 TMPOP42166 694 aaKnown RBP12.28□□□□□ -0.44
VPS25-205ENST00000590339 HSP90AB2PQ58FF8 381 aa12.28□□□□□ -0.44
VPS25-205ENST00000590339 NBPF14Q5TI25 921 aa12.28□□□□□ -0.44
VPS25-205ENST00000590339 RRP7AQ9Y3A4 280 aaKnown RBP12.28□□□□□ -0.44
VPS25-205ENST00000590339 MAPK8IP3Q9UPT6 1336 aa12.28□□□□□ -0.44
VPS25-205ENST00000590339 RTL1A6NKG5 1358 aa12.28□□□□□ -0.44
VPS25-205ENST00000590339 NBPF6Q5VWK0 638 aa12.27□□□□□ -0.45
VPS25-205ENST00000590339 USHBP1Q8N6Y0 703 aa12.27□□□□□ -0.45
VPS25-205ENST00000590339 NBPF4Q96M43 638 aa12.27□□□□□ -0.45
VPS25-205ENST00000590339 IL16Q14005 1332 aa12.27□□□□□ -0.45
VPS25-205ENST00000590339 DISP2A7MBM2 1401 aa12.27□□□□□ -0.45
VPS25-205ENST00000590339 TRIM35Q9UPQ4 493 aa12.26□□□□□ -0.45
VPS25-205ENST00000590339 LRRC37A3O60309 1634 aa12.26□□□□□ -0.45
VPS25-205ENST00000590339 PLSCR1O15162 318 aa12.25□□□□□ -0.45
VPS25-205ENST00000590339 PRKAR2BP31323 418 aa12.25□□□□□ -0.45
VPS25-205ENST00000590339 EIF4A2Q14240 407 aaKnown RBP12.25□□□□□ -0.45
VPS25-205ENST00000590339 PELP1Q8IZL8 1130 aaKnown RBP12.25□□□□□ -0.45
VPS25-205ENST00000590339 KDRP35968 1356 aa12.25□□□□□ -0.45
VPS25-205ENST00000590339 RGPD5Q99666 1765 aa12.25□□□□□ -0.45
VPS25-205ENST00000590339 PROM2Q8N271 834 aa12.24□□□□□ -0.45
VPS25-205ENST00000590339 NEUROD2Q15784 382 aa12.23□□□□□ -0.45
VPS25-205ENST00000590339 NFE2L2Q16236 605 aa12.23□□□□□ -0.45
VPS25-205ENST00000590339 ZCRB1Q8TBF4 217 aaKnown RBP12.23□□□□□ -0.45
VPS25-205ENST00000590339 SYTL4Q96C24 671 aaPredicted RBP12.23□□□□□ -0.45
VPS25-205ENST00000590339 PARP4Q9UKK3 1724 aaKnown RBP12.23□□□□□ -0.45
VPS25-205ENST00000590339 ABCC6O95255 1503 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 TNS2Q63HR2 1409 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 FANCIQ9NVI1 1328 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 TXNRD1Q16881 649 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 RAPGEF4Q8WZA2 1011 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 MYH16Q9H6N6 1097 aa12.22□□□□□ -0.45
VPS25-205ENST00000590339 IGSF1Q8N6C5 1336 aa12.21□□□□□ -0.45
VPS25-205ENST00000590339 HMOX1P09601 288 aa12.21□□□□□ -0.45
VPS25-205ENST00000590339 TATP17735 454 aaPredicted RBP12.21□□□□□ -0.45
VPS25-205ENST00000590339 PRIM1P49642 420 aaKnown RBP12.21□□□□□ -0.45
VPS25-205ENST00000590339 NCAPD2Q15021 1401 aa12.2□□□□□ -0.46
VPS25-205ENST00000590339 CT47B1P0C2W7 299 aaPredicted RBP12.2□□□□□ -0.46
VPS25-205ENST00000590339 RIPK4P57078 832 aa12.2□□□□□ -0.46
VPS25-205ENST00000590339 EXOC6Q8TAG9 804 aa12.2□□□□□ -0.46
VPS25-205ENST00000590339 PHACTR3Q96KR7 559 aa12.2□□□□□ -0.46
VPS25-205ENST00000590339 ANO8Q9HCE9 1232 aaPredicted RBP12.2□□□□□ -0.46
VPS25-205ENST00000590339 TNS1Q9HBL0 1735 aaKnown RBP12.2□□□□□ -0.46
VPS25-205ENST00000590339 BCL9O00512 1426 aa12.2□□□□□ -0.46
VPS25-205ENST00000590339 PLIN1O60240 522 aa12.19□□□□□ -0.46
VPS25-205ENST00000590339 NEFMP07197 916 aa12.19□□□□□ -0.46
VPS25-205ENST00000590339 B4GALNT3Q6L9W6 998 aa12.19□□□□□ -0.46
VPS25-205ENST00000590339 AEBP1Q8IUX7 1158 aa12.19□□□□□ -0.46
VPS25-205ENST00000590339 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.19□□□□□ -0.46
VPS25-205ENST00000590339 RGPD2P0DJD1 1756 aa12.18□□□□□ -0.46
VPS25-205ENST00000590339 LMOD3Q0VAK6 560 aa12.18□□□□□ -0.46
VPS25-205ENST00000590339 STK32BQ9NY57 414 aa12.18□□□□□ -0.46
VPS25-205ENST00000590339 FAM208AQ9UK61 1670 aaKnown RBP12.17□□□□□ -0.46
VPS25-205ENST00000590339 RARSP54136 660 aaKnown RBP12.17□□□□□ -0.46
VPS25-205ENST00000590339 KCNQ4P56696 695 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms