RNA–Protein interactions for RNA: ENST00000588032.5

TPM4-207, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 712 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-207ENST00000588032 PARD3Q8TEW0 1356 aa13.69□□□□□ -0.22
TPM4-207ENST00000588032 PLSCR1O15162 318 aa13.68□□□□□ -0.22
TPM4-207ENST00000588032 EN1Q05925 392 aaPredicted RBP13.68□□□□□ -0.22
TPM4-207ENST00000588032 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.68□□□□□ -0.223e-8■■□□□ 14.2
TPM4-207ENST00000588032 PLEKHG2Q9H7P9 1386 aa13.68□□□□□ -0.22
TPM4-207ENST00000588032 CAMKK2Q96RR4 588 aa13.67□□□□□ -0.22
TPM4-207ENST00000588032 SPG7Q9UQ90 795 aa13.67□□□□□ -0.22
TPM4-207ENST00000588032 MEGF6O75095 1541 aa13.67□□□□□ -0.22
TPM4-207ENST00000588032 IGSF1Q8N6C5 1336 aa13.66□□□□□ -0.22
TPM4-207ENST00000588032 IL13P35225 146 aa13.66□□□□□ -0.22
TPM4-207ENST00000588032 RGPD2P0DJD1 1756 aa13.66□□□□□ -0.22
TPM4-207ENST00000588032 PCDH11XQ9BZA7 1347 aa13.65□□□□□ -0.22
TPM4-207ENST00000588032 PCDH11YQ9BZA8 1340 aa13.65□□□□□ -0.22
TPM4-207ENST00000588032 EZH2Q15910 746 aaKnown RBP13.65□□□□□ -0.22
TPM4-207ENST00000588032 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
TPM4-207ENST00000588032 CNGB1Q14028 1251 aaPredicted RBP13.64□□□□□ -0.23
TPM4-207ENST00000588032 TNS1Q9HBL0 1735 aaKnown RBP13.64□□□□□ -0.23
TPM4-207ENST00000588032 KCNQ2O43526 872 aa13.63□□□□□ -0.23
TPM4-207ENST00000588032 ACSBG1Q96GR2 724 aa13.63□□□□□ -0.23
TPM4-207ENST00000588032 CFAP53Q96M91 514 aa13.63□□□□□ -0.23
TPM4-207ENST00000588032 AMOTQ4VCS5 1084 aa13.62□□□□□ -0.23
TPM4-207ENST00000588032 PLEKHO1Q53GL0 409 aaPredicted RBP13.62□□□□□ -0.23
TPM4-207ENST00000588032 SBF2Q86WG5 1849 aa13.62□□□□□ -0.23
TPM4-207ENST00000588032 CYP27B1O15528 508 aa13.61□□□□□ -0.23
TPM4-207ENST00000588032 PPP2R1AP30153 589 aa13.61□□□□□ -0.23
TPM4-207ENST00000588032 PRIM1P49642 420 aaKnown RBP13.61□□□□□ -0.23
TPM4-207ENST00000588032 DDX10Q13206 875 aaKnown RBP13.61□□□□□ -0.23
TPM4-207ENST00000588032 NKX1-1Q15270 411 aaPredicted RBP13.61□□□□□ -0.23
TPM4-207ENST00000588032 SULT6B1Q6IMI4 303 aa13.61□□□□□ -0.23
TPM4-207ENST00000588032 PTF1AQ7RTS3 328 aa13.61□□□□□ -0.23
TPM4-207ENST00000588032 KDRP35968 1356 aa13.6□□□□□ -0.23
TPM4-207ENST00000588032 NBPF14Q5TI25 921 aa13.6□□□□□ -0.23
TPM4-207ENST00000588032 IFNL2Q8IZJ0 200 aa13.6□□□□□ -0.23
TPM4-207ENST00000588032 HSP90AB1P08238 724 aaKnown RBP13.59□□□□□ -0.23
TPM4-207ENST00000588032 SYTL4Q96C24 671 aaPredicted RBP13.59□□□□□ -0.23
TPM4-207ENST00000588032 NHSQ6T4R5 1651 aa13.59□□□□□ -0.23
TPM4-207ENST00000588032 EP400Q96L91 3159 aa13.59□□□□□ -0.23
TPM4-207ENST00000588032 PHKG2P15735 406 aa13.58□□□□□ -0.24
TPM4-207ENST00000588032 HMGB2P26583 209 aaKnown RBP13.58□□□□□ -0.24
TPM4-207ENST00000588032 RALBP1Q15311 655 aa13.58□□□□□ -0.24
TPM4-207ENST00000588032 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
TPM4-207ENST00000588032 NUDCQ9Y266 331 aa13.58□□□□□ -0.24
TPM4-207ENST00000588032 PKD1L3Q7Z443 1732 aa13.57□□□□□ -0.24
TPM4-207ENST00000588032 SHANK3Q9BYB0 1731 aa13.57□□□□□ -0.24
TPM4-207ENST00000588032 AEBP1Q8IUX7 1158 aa13.57□□□□□ -0.24
TPM4-207ENST00000588032 PROM2Q8N271 834 aa13.57□□□□□ -0.24
TPM4-207ENST00000588032 RGPD3A6NKT7 1758 aaPredicted RBP13.57□□□□□ -0.24
TPM4-207ENST00000588032 RGPD4Q7Z3J3 1758 aa13.57□□□□□ -0.24
TPM4-207ENST00000588032 DCAF5Q96JK2 942 aa13.56□□□□□ -0.24
TPM4-207ENST00000588032 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
TPM4-207ENST00000588032 HMOX1P09601 288 aa13.55□□□□□ -0.24
TPM4-207ENST00000588032 C1orf141Q5JVX7 400 aa13.55□□□□□ -0.24
TPM4-207ENST00000588032 SLC27A3Q5K4L6 730 aa13.55□□□□□ -0.24
TPM4-207ENST00000588032 ZNF530Q6P9A1 599 aaPredicted RBP13.55□□□□□ -0.24
TPM4-207ENST00000588032 COL3A1P02461 1466 aaPredicted RBP13.55□□□□□ -0.24
TPM4-207ENST00000588032 ERVV-2B6SEH9 535 aa13.54□□□□□ -0.24
TPM4-207ENST00000588032 MPRIPQ6WCQ1 1025 aa13.54□□□□□ -0.24
TPM4-207ENST00000588032 SMARCC1Q92922 1105 aaPredicted RBP13.54□□□□□ -0.24
TPM4-207ENST00000588032 RREB1Q92766 1687 aa13.53□□□□□ -0.24
TPM4-207ENST00000588032 ZNF316A6NFI3 1004 aaPredicted RBP13.53□□□□□ -0.24
TPM4-207ENST00000588032 R3HDM1Q15032 1099 aaKnown RBP13.53□□□□□ -0.24
TPM4-207ENST00000588032 TMOD3Q9NYL9 352 aa13.53□□□□□ -0.24
TPM4-207ENST00000588032 AKAP4Q5JQC9 854 aa13.52□□□□□ -0.25
TPM4-207ENST00000588032 RNF39Q9H2S5 420 aa13.52□□□□□ -0.25
TPM4-207ENST00000588032 BTAF1O14981 1849 aa13.52□□□□□ -0.25
TPM4-207ENST00000588032 KAT6BQ8WYB5 2073 aa13.51□□□□□ -0.25
TPM4-207ENST00000588032 DOT1LQ8TEK3 1739 aa13.51□□□□□ -0.25
TPM4-207ENST00000588032 PSDA5PKW4 1024 aaPredicted RBP13.51□□□□□ -0.25
TPM4-207ENST00000588032 FCHSD2O94868 740 aa13.51□□□□□ -0.25
TPM4-207ENST00000588032 PIGBQ92521 554 aa13.51□□□□□ -0.25
TPM4-207ENST00000588032 STK32BQ9NY57 414 aa13.51□□□□□ -0.25
TPM4-207ENST00000588032 NUP188Q5SRE5 1749 aa13.5□□□□□ -0.25
TPM4-207ENST00000588032 U2AF1L5P0DN76 240 aaPredicted RBP13.5□□□□□ -0.25
TPM4-207ENST00000588032 CABP4P57796 275 aa13.5□□□□□ -0.25
TPM4-207ENST00000588032 U2AF1Q01081 240 aaKnown RBP eCLIP13.5□□□□□ -0.25
TPM4-207ENST00000588032 SLC15A2Q16348 729 aa13.5□□□□□ -0.25
TPM4-207ENST00000588032 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
TPM4-207ENST00000588032 MTHFSDQ2M296 383 aaKnown RBP13.49□□□□□ -0.25
TPM4-207ENST00000588032 GAS2L2Q8NHY3 880 aa13.49□□□□□ -0.25
TPM4-207ENST00000588032 PNNQ9H307 717 aaKnown RBP13.49□□□□□ -0.25
TPM4-207ENST00000588032 LRRC4BQ9NT99 713 aa13.49□□□□□ -0.25
TPM4-207ENST00000588032 CCNL1Q9UK58 526 aaPredicted RBP13.49□□□□□ -0.25
TPM4-207ENST00000588032 PALLDQ8WX93 1383 aa13.48□□□□□ -0.25
TPM4-207ENST00000588032 PRKAR2BP31323 418 aa13.48□□□□□ -0.25
TPM4-207ENST00000588032 RSPH6AQ9H0K4 717 aa13.48□□□□□ -0.25
TPM4-207ENST00000588032 NEFMP07197 916 aa13.47□□□□□ -0.25
TPM4-207ENST00000588032 PRKRIP1Q9H875 184 aaPredicted RBP13.47□□□□□ -0.25
TPM4-207ENST00000588032 ANO8Q9HCE9 1232 aaPredicted RBP13.47□□□□□ -0.25
TPM4-207ENST00000588032 KDM6AO15550 1401 aaPredicted RBP13.47□□□□□ -0.25
TPM4-207ENST00000588032 ATG3Q9NT62 314 aa13.46□□□□□ -0.25
TPM4-207ENST00000588032 ASAP1Q9ULH1 1129 aa13.46□□□□□ -0.25
TPM4-207ENST00000588032 TOGARAM1Q9Y4F4 1720 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 LOC102724428A0A0B4J2F2 783 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 GNAT3A8MTJ3 354 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 RNMTO43148 476 aaKnown RBP13.45□□□□□ -0.26
TPM4-207ENST00000588032 SIK1P57059 783 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 NFATC2IPQ8NCF5 419 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 AKT1S1Q96B36 256 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 ITGB4P16144 1822 aa13.45□□□□□ -0.26
TPM4-207ENST00000588032 LY75O60449 1722 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms