RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 KCNQ4P56696 695 aa15.42■□□□□ 0.06
TOP3A-210ENST00000580713 DDX54Q8TDD1 881 aaKnown RBP15.42■□□□□ 0.06
TOP3A-210ENST00000580713 KIAA1210Q9ULL0 1709 aa15.42■□□□□ 0.06
TOP3A-210ENST00000580713 TRPM1Q7Z4N2 1603 aa15.42■□□□□ 0.06
TOP3A-210ENST00000580713 ABCC6O95255 1503 aa15.42■□□□□ 0.06
TOP3A-210ENST00000580713 HSPA6P17066 643 aa15.41■□□□□ 0.06
TOP3A-210ENST00000580713 ZNF526Q8TF50 670 aaPredicted RBP15.41■□□□□ 0.06
TOP3A-210ENST00000580713 SYTL4Q96C24 671 aaPredicted RBP15.41■□□□□ 0.06
TOP3A-210ENST00000580713 ERBB3P21860 1342 aa15.41■□□□□ 0.06
TOP3A-210ENST00000580713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.39■□□□□ 0.05
TOP3A-210ENST00000580713 ANKRD24Q8TF21 1146 aa15.39■□□□□ 0.05
TOP3A-210ENST00000580713 NFAT5O94916 1531 aa15.38■□□□□ 0.05
TOP3A-210ENST00000580713 KTN1Q86UP2 1357 aaKnown RBP15.38■□□□□ 0.05
TOP3A-210ENST00000580713 GOLGB1Q14789 3259 aaKnown RBP15.37■□□□□ 0.05
TOP3A-210ENST00000580713 MSL1Q68DK7 614 aa15.37■□□□□ 0.05
TOP3A-210ENST00000580713 PRIM1P49642 420 aaKnown RBP15.36■□□□□ 0.05
TOP3A-210ENST00000580713 CCNL1Q9UK58 526 aaPredicted RBP15.35■□□□□ 0.05
TOP3A-210ENST00000580713 QSER1Q2KHR3 1735 aa15.34■□□□□ 0.05
TOP3A-210ENST00000580713 COL23A1Q86Y22 540 aaPredicted RBP15.34■□□□□ 0.05
TOP3A-210ENST00000580713 LTV1Q96GA3 475 aaPredicted RBP15.34■□□□□ 0.05
TOP3A-210ENST00000580713 NME9Q86XW9 330 aa15.33■□□□□ 0.04
TOP3A-210ENST00000580713 COL24A1Q17RW2 1714 aa15.32■□□□□ 0.04
TOP3A-210ENST00000580713 CD2APQ9Y5K6 639 aa15.32■□□□□ 0.04
TOP3A-210ENST00000580713 TUBGCP6Q96RT7 1819 aa15.31■□□□□ 0.04
TOP3A-210ENST00000580713 USP31Q70CQ4 1352 aa15.31■□□□□ 0.04
TOP3A-210ENST00000580713 ANKRD36BQ8N2N9 1353 aa15.3■□□□□ 0.04
TOP3A-210ENST00000580713 WWC3Q9ULE0 1092 aa15.3■□□□□ 0.04
TOP3A-210ENST00000580713 POLA2Q14181 598 aa15.29■□□□□ 0.04
TOP3A-210ENST00000580713 ADCY9O60503 1353 aa15.28■□□□□ 0.04
TOP3A-210ENST00000580713 USP47Q96K76 1375 aa15.28■□□□□ 0.04
TOP3A-210ENST00000580713 ZCRB1Q8TBF4 217 aaKnown RBP15.28■□□□□ 0.04
TOP3A-210ENST00000580713 TMC1Q8TDI8 760 aa15.28■□□□□ 0.04
TOP3A-210ENST00000580713 APLP1P51693 650 aa15.27■□□□□ 0.04
TOP3A-210ENST00000580713 HDGFL2Q7Z4V5 671 aaPredicted RBP15.27■□□□□ 0.04
TOP3A-210ENST00000580713 FLAD1Q8NFF5 587 aa15.27■□□□□ 0.04
TOP3A-210ENST00000580713 IP6K1Q92551 441 aa15.27■□□□□ 0.04
TOP3A-210ENST00000580713 LTN1O94822 1766 aa15.26■□□□□ 0.03
TOP3A-210ENST00000580713 NSD2O96028 1365 aa15.26■□□□□ 0.03
TOP3A-210ENST00000580713 KIF3CO14782 793 aa15.26■□□□□ 0.03
TOP3A-210ENST00000580713 IGSF1Q8N6C5 1336 aa15.25■□□□□ 0.03
TOP3A-210ENST00000580713 ROCK2O75116 1388 aaKnown RBP15.24■□□□□ 0.03
TOP3A-210ENST00000580713 LY75O60449 1722 aa15.24■□□□□ 0.03
TOP3A-210ENST00000580713 L3MBTL2Q969R5 705 aa15.24■□□□□ 0.03
TOP3A-210ENST00000580713 SBNO2Q9Y2G9 1366 aa15.24■□□□□ 0.03
TOP3A-210ENST00000580713 DOT1LQ8TEK3 1739 aa15.23■□□□□ 0.03
TOP3A-210ENST00000580713 HMGB2P26583 209 aaKnown RBP15.23■□□□□ 0.03
TOP3A-210ENST00000580713 MON2Q7Z3U7 1717 aa15.23■□□□□ 0.03
TOP3A-210ENST00000580713 AMPHP49418 695 aa15.22■□□□□ 0.03
TOP3A-210ENST00000580713 SLC12A5Q9H2X9 1139 aa15.22■□□□□ 0.03
TOP3A-210ENST00000580713 PHF14O94880 888 aa15.21■□□□□ 0.03
TOP3A-210ENST00000580713 AK7Q96M32 723 aa15.21■□□□□ 0.03
TOP3A-210ENST00000580713 EDC4Q6P2E9 1401 aaKnown RBP15.2■□□□□ 0.02
TOP3A-210ENST00000580713 DNAJC5GQ8N7S2 189 aa15.2■□□□□ 0.02
TOP3A-210ENST00000580713 TERF2IPQ9NYB0 399 aa15.2■□□□□ 0.02
TOP3A-210ENST00000580713 TOMM70O94826 608 aa15.19■□□□□ 0.02
TOP3A-210ENST00000580713 HOXC9P31274 260 aa15.19■□□□□ 0.02
TOP3A-210ENST00000580713 USP54Q70EL1 1684 aa15.19■□□□□ 0.02
TOP3A-210ENST00000580713 MPRIPQ6WCQ1 1025 aa15.18■□□□□ 0.02
TOP3A-210ENST00000580713 RAPGEF4Q8WZA2 1011 aa15.18■□□□□ 0.02
TOP3A-210ENST00000580713 PALLDQ8WX93 1383 aa15.18■□□□□ 0.02
TOP3A-210ENST00000580713 CD163L1Q9NR16 1453 aa15.18■□□□□ 0.02
TOP3A-210ENST00000580713 MAP3K19Q56UN5 1328 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 MEGF6O75095 1541 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 FAM208AQ9UK61 1670 aaKnown RBP15.17■□□□□ 0.02
TOP3A-210ENST00000580713 FBLN1P23142 703 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 SMIM5Q71RC9 77 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 USHBP1Q8N6Y0 703 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 COG3Q96JB2 828 aa15.17■□□□□ 0.02
TOP3A-210ENST00000580713 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.16■□□□□ 0.02
TOP3A-210ENST00000580713 TATP17735 454 aaPredicted RBP15.16■□□□□ 0.02
TOP3A-210ENST00000580713 C5P01031 1676 aa15.16■□□□□ 0.02
TOP3A-210ENST00000580713 COL13A1Q5TAT6 717 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-210ENST00000580713 NBPF6Q5VWK0 638 aa15.15■□□□□ 0.02
TOP3A-210ENST00000580713 C16orf71Q8IYS4 520 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-210ENST00000580713 SMARCC1Q92922 1105 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-210ENST00000580713 NBPF4Q96M43 638 aa15.15■□□□□ 0.02
TOP3A-210ENST00000580713 CGNL1Q0VF96 1302 aa15.15■□□□□ 0.02
TOP3A-210ENST00000580713 A0A1W2PP64 1363 aa15.14■□□□□ 0.01
TOP3A-210ENST00000580713 NEUROD1Q13562 356 aa15.14■□□□□ 0.01
TOP3A-210ENST00000580713 AMIGO3Q86WK7 504 aa15.14■□□□□ 0.01
TOP3A-210ENST00000580713 NMRK2Q9NPI5 230 aa15.14■□□□□ 0.01
TOP3A-210ENST00000580713 ARHGAP27Q6ZUM4 889 aa15.13■□□□□ 0.01
TOP3A-210ENST00000580713 NSD3Q9BZ95 1437 aa15.13■□□□□ 0.01
TOP3A-210ENST00000580713 BCS1LQ9Y276 419 aa15.13■□□□□ 0.01
TOP3A-210ENST00000580713 PCDH11XQ9BZA7 1347 aa15.13■□□□□ 0.01
TOP3A-210ENST00000580713 PCDH11YQ9BZA8 1340 aa15.13■□□□□ 0.01
TOP3A-210ENST00000580713 SSFA2P28290 1259 aa15.12■□□□□ 0.01
TOP3A-210ENST00000580713 HTRA3P83110 453 aa15.12■□□□□ 0.01
TOP3A-210ENST00000580713 TNS4Q8IZW8 715 aa15.12■□□□□ 0.01
TOP3A-210ENST00000580713 SIN3AQ96ST3 1273 aa15.12■□□□□ 0.01
TOP3A-210ENST00000580713 CARD11Q9BXL7 1154 aa15.12■□□□□ 0.01
TOP3A-210ENST00000580713 RGPD2P0DJD1 1756 aa15.11■□□□□ 0.01
TOP3A-210ENST00000580713 RRS1Q15050 365 aaKnown RBP15.11■□□□□ 0.01
TOP3A-210ENST00000580713 KLRG1Q96E93 195 aa15.11■□□□□ 0.01
TOP3A-210ENST00000580713 SMG6Q86US8 1419 aaKnown RBP15.1■□□□□ 0.01
TOP3A-210ENST00000580713 C4BP0C0L5 1744 aa15.1■□□□□ 0.01
TOP3A-210ENST00000580713 MMP10P09238 476 aa15.1■□□□□ 0.01
TOP3A-210ENST00000580713 RBM46Q8TBY0 533 aaKnown RBP15.1■□□□□ 0.01
TOP3A-210ENST00000580713 TAF1LQ8IZX4 1826 aa15.1■□□□□ 0.01
TOP3A-210ENST00000580713 A0A0G2JLW4 131 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms