RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 SYTL4Q96C24 671 aaPredicted RBP22.29■■□□□ 1.16
VAPA-204ENST00000577901 ANKRD36BQ8N2N9 1353 aa22.28■■□□□ 1.16
VAPA-204ENST00000577901 PRIM1P49642 420 aaKnown RBP22.28■■□□□ 1.16
VAPA-204ENST00000577901 CDCA8Q53HL2 280 aa22.28■■□□□ 1.16
VAPA-204ENST00000577901 ZCRB1Q8TBF4 217 aaKnown RBP22.27■■□□□ 1.16
VAPA-204ENST00000577901 MAP3K5Q99683 1374 aa22.25■■□□□ 1.15
VAPA-204ENST00000577901 EIF4G2P78344 907 aaKnown RBP eCLIP22.25■■□□□ 1.15
VAPA-204ENST00000577901 SLC16A10Q8TF71 515 aa22.25■■□□□ 1.15
VAPA-204ENST00000577901 KAT6BQ8WYB5 2073 aa22.25■■□□□ 1.15
VAPA-204ENST00000577901 MEGF6O75095 1541 aa22.25■■□□□ 1.15
VAPA-204ENST00000577901 RTL1A6NKG5 1358 aa22.25■■□□□ 1.15
VAPA-204ENST00000577901 DOT1LQ8TEK3 1739 aa22.24■■□□□ 1.15
VAPA-204ENST00000577901 KCNQ4P56696 695 aa22.24■■□□□ 1.15
VAPA-204ENST00000577901 RRS1Q15050 365 aaKnown RBP22.24■■□□□ 1.15
VAPA-204ENST00000577901 NSD2O96028 1365 aa22.24■■□□□ 1.15
VAPA-204ENST00000577901 FYB1O15117 783 aa22.23■■□□□ 1.15
VAPA-204ENST00000577901 ZNF784Q8NCA9 323 aaPredicted RBP22.23■■□□□ 1.15
VAPA-204ENST00000577901 GGNBP2Q9H3C7 697 aa22.23■■□□□ 1.15
VAPA-204ENST00000577901 TFCP2L1Q9NZI6 479 aa22.23■■□□□ 1.15
VAPA-204ENST00000577901 PNPLA7Q6ZV29 1317 aa22.23■■□□□ 1.15
VAPA-204ENST00000577901 QSER1Q2KHR3 1735 aa22.23■■□□□ 1.15
VAPA-204ENST00000577901 RGPD2P0DJD1 1756 aa22.22■■□□□ 1.15
VAPA-204ENST00000577901 NBPF6Q5VWK0 638 aa22.22■■□□□ 1.15
VAPA-204ENST00000577901 NBPF4Q96M43 638 aa22.22■■□□□ 1.15
VAPA-204ENST00000577901 SHANK3Q9BYB0 1731 aa22.22■■□□□ 1.15
VAPA-204ENST00000577901 POLD1P28340 1107 aa22.21■■□□□ 1.15
VAPA-204ENST00000577901 USHBP1Q8N6Y0 703 aa22.2■■□□□ 1.14
VAPA-204ENST00000577901 SMG6Q86US8 1419 aaKnown RBP22.2■■□□□ 1.14
VAPA-204ENST00000577901 RAPGEF4Q8WZA2 1011 aa22.19■■□□□ 1.14
VAPA-204ENST00000577901 CCNL1Q9UK58 526 aaPredicted RBP22.19■■□□□ 1.14
VAPA-204ENST00000577901 CGNL1Q0VF96 1302 aa22.19■■□□□ 1.14
VAPA-204ENST00000577901 LY75O60449 1722 aa22.19■■□□□ 1.14
VAPA-204ENST00000577901 KLHL34Q8N239 644 aa22.18■■□□□ 1.14
VAPA-204ENST00000577901 HSPA5P11021 654 aaKnown RBP22.17■■□□□ 1.14
VAPA-204ENST00000577901 GPR162Q16538 588 aa22.17■■□□□ 1.14
VAPA-204ENST00000577901 TUBGCP6Q96RT7 1819 aa22.16■■□□□ 1.14
VAPA-204ENST00000577901 GOLGB1Q14789 3259 aaKnown RBP22.16■■□□□ 1.14
VAPA-204ENST00000577901 COL24A1Q17RW2 1714 aa22.16■■□□□ 1.14
VAPA-204ENST00000577901 INSRP06213 1382 aa22.15■■□□□ 1.14
VAPA-204ENST00000577901 TATP17735 454 aaPredicted RBP22.15■■□□□ 1.14
VAPA-204ENST00000577901 HSP90AB2PQ58FF8 381 aa22.15■■□□□ 1.14
VAPA-204ENST00000577901 FLT4P35916 1363 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 PCDH11XQ9BZA7 1347 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 PCDH11YQ9BZA8 1340 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 CHD4Q14839 1912 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 KIF20BQ96Q89 1820 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 KIF24Q5T7B8 1368 aa22.12■■□□□ 1.13
VAPA-204ENST00000577901 PELP1Q8IZL8 1130 aaKnown RBP22.11■■□□□ 1.13
VAPA-204ENST00000577901 COL23A1Q86Y22 540 aaPredicted RBP22.1■■□□□ 1.13
VAPA-204ENST00000577901 NLGN2Q8NFZ4 835 aa22.1■■□□□ 1.13
VAPA-204ENST00000577901 POLR3GLQ9BT43 218 aa22.09■■□□□ 1.13
VAPA-204ENST00000577901 CARD14Q9BXL6 1004 aa22.09■■□□□ 1.13
VAPA-204ENST00000577901 MPRIPQ6WCQ1 1025 aa22.07■■□□□ 1.12
VAPA-204ENST00000577901 NSD3Q9BZ95 1437 aa22.06■■□□□ 1.12
VAPA-204ENST00000577901 CYP27B1O15528 508 aa22.06■■□□□ 1.12
VAPA-204ENST00000577901 EMILIN1Q9Y6C2 1016 aa22.06■■□□□ 1.12
VAPA-204ENST00000577901 PALLDQ8WX93 1383 aa22.06■■□□□ 1.12
VAPA-204ENST00000577901 C5P01031 1676 aa22.06■■□□□ 1.12
VAPA-204ENST00000577901 HMGB2P26583 209 aaKnown RBP22.05■■□□□ 1.12
VAPA-204ENST00000577901 MSL1Q68DK7 614 aa22.05■■□□□ 1.12
VAPA-204ENST00000577901 PPM1GO15355 546 aaPredicted RBP22.03■■□□□ 1.12
VAPA-204ENST00000577901 C1QTNF8P60827 252 aa22.03■■□□□ 1.12
VAPA-204ENST00000577901 FLAD1Q8NFF5 587 aa22.03■■□□□ 1.12
VAPA-204ENST00000577901 SMARCC1Q92922 1105 aaPredicted RBP22.02■■□□□ 1.12
VAPA-204ENST00000577901 TOGARAM1Q9Y4F4 1720 aa22.01■■□□□ 1.11
VAPA-204ENST00000577901 NCAPD2Q15021 1401 aa22.01■■□□□ 1.11
VAPA-204ENST00000577901 YBX3P16989 372 aaKnown RBP eCLIP22.01■■□□□ 1.113e-29■■■■□ 25.6
VAPA-204ENST00000577901 PKD1L3Q7Z443 1732 aa22■■□□□ 1.11
VAPA-204ENST00000577901 GRIN3BO60391 1043 aa22■■□□□ 1.11
VAPA-204ENST00000577901 SPG7Q9UQ90 795 aa22■■□□□ 1.11
VAPA-204ENST00000577901 SENP3-EIF4A1A0A087X0R7 540 aa21.99■■□□□ 1.11
VAPA-204ENST00000577901 NKX1-1Q15270 411 aaPredicted RBP21.99■■□□□ 1.11
VAPA-204ENST00000577901 PIGBQ92521 554 aa21.99■■□□□ 1.11
VAPA-204ENST00000577901 AK7Q96M32 723 aa21.99■■□□□ 1.11
VAPA-204ENST00000577901 WASHC2AQ641Q2 1341 aa21.99■■□□□ 1.11
VAPA-204ENST00000577901 TAF1LQ8IZX4 1826 aa21.99■■□□□ 1.11
VAPA-204ENST00000577901 C4BP0C0L5 1744 aa21.97■■□□□ 1.11
VAPA-204ENST00000577901 ANKRD26Q9UPS8 1709 aa21.97■■□□□ 1.11
VAPA-204ENST00000577901 ITGB4P16144 1822 aa21.97■■□□□ 1.11
VAPA-204ENST00000577901 GIGYF1O75420 1035 aaPredicted RBP21.97■■□□□ 1.11
VAPA-204ENST00000577901 CD2APQ9Y5K6 639 aa21.97■■□□□ 1.11
VAPA-204ENST00000577901 EYA1Q99502 592 aa21.96■■□□□ 1.11
VAPA-204ENST00000577901 AMIGO3Q86WK7 504 aa21.95■■□□□ 1.1
VAPA-204ENST00000577901 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.95■■□□□ 1.1
VAPA-204ENST00000577901 PHF14O94880 888 aa21.94■■□□□ 1.1
VAPA-204ENST00000577901 PANK3Q9H999 370 aa21.94■■□□□ 1.1
VAPA-204ENST00000577901 POLKQ9UBT6 870 aa21.94■■□□□ 1.1
VAPA-204ENST00000577901 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.93■■□□□ 1.1
VAPA-204ENST00000577901 LOC102724428A0A0B4J2F2 783 aa21.93■■□□□ 1.1
VAPA-204ENST00000577901 SIK1P57059 783 aa21.93■■□□□ 1.1
VAPA-204ENST00000577901 SMIM5Q71RC9 77 aa21.93■■□□□ 1.1
VAPA-204ENST00000577901 TMOD3Q9NYL9 352 aa21.93■■□□□ 1.1
VAPA-204ENST00000577901 KIF7Q2M1P5 1343 aa21.91■■□□□ 1.1
VAPA-204ENST00000577901 PHKG2P15735 406 aa21.91■■□□□ 1.1
VAPA-204ENST00000577901 IFNL2Q8IZJ0 200 aa21.91■■□□□ 1.1
VAPA-204ENST00000577901 LINC00116Q8NCU8 138 aa21.91■■□□□ 1.1
VAPA-204ENST00000577901 MAP2P11137 1827 aaKnown RBP21.9■■□□□ 1.1
VAPA-204ENST00000577901 SSFA2P28290 1259 aa21.9■■□□□ 1.1
VAPA-204ENST00000577901 ASAP1Q9ULH1 1129 aa21.9■■□□□ 1.1
VAPA-204ENST00000577901 UBR3Q6ZT12 1888 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms