RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 SENP3-EIF4A1A0A087X0R7 540 aa16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 AMPHP49418 695 aa16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 PRIM1P49642 420 aaKnown RBP16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 C1QTNF8P60827 252 aa16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 GOLGB1Q14789 3259 aaKnown RBP16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 MAP3K19Q56UN5 1328 aa16.43■□□□□ 0.22
CTDNEP1-212ENST00000576613 RGPD2P0DJD1 1756 aa16.42■□□□□ 0.22
CTDNEP1-212ENST00000576613 SLC24A1O60721 1099 aa16.42■□□□□ 0.22
CTDNEP1-212ENST00000576613 HOXC9P31274 260 aa16.42■□□□□ 0.22
CTDNEP1-212ENST00000576613 PELP1Q8IZL8 1130 aaKnown RBP16.41■□□□□ 0.22
CTDNEP1-212ENST00000576613 ZCRB1Q8TBF4 217 aaKnown RBP16.41■□□□□ 0.22
CTDNEP1-212ENST00000576613 MEGF6O75095 1541 aa16.4■□□□□ 0.22
CTDNEP1-212ENST00000576613 RTL1A6NKG5 1358 aa16.4■□□□□ 0.22
CTDNEP1-212ENST00000576613 NSD2O96028 1365 aa16.4■□□□□ 0.22
CTDNEP1-212ENST00000576613 CCNL1Q9UK58 526 aaPredicted RBP16.4■□□□□ 0.22
CTDNEP1-212ENST00000576613 USP47Q96K76 1375 aa16.39■□□□□ 0.21
CTDNEP1-212ENST00000576613 SMG6Q86US8 1419 aaKnown RBP16.39■□□□□ 0.21
CTDNEP1-212ENST00000576613 KCNQ4P56696 695 aa16.39■□□□□ 0.21
CTDNEP1-212ENST00000576613 CGNL1Q0VF96 1302 aa16.39■□□□□ 0.21
CTDNEP1-212ENST00000576613 GIGYF1O75420 1035 aaPredicted RBP16.38■□□□□ 0.21
CTDNEP1-212ENST00000576613 MSH5O43196 834 aa16.37■□□□□ 0.21
CTDNEP1-212ENST00000576613 HMGB2P26583 209 aaKnown RBP16.37■□□□□ 0.21
CTDNEP1-212ENST00000576613 TESK2Q96S53 571 aa16.37■□□□□ 0.21
CTDNEP1-212ENST00000576613 C5P01031 1676 aa16.37■□□□□ 0.21
CTDNEP1-212ENST00000576613 ST20-MTHFSA0A0A6YYL1 179 aa16.36■□□□□ 0.21
CTDNEP1-212ENST00000576613 GRIN3BO60391 1043 aa16.36■□□□□ 0.21
CTDNEP1-212ENST00000576613 NLGN2Q8NFZ4 835 aa16.36■□□□□ 0.21
CTDNEP1-212ENST00000576613 RAPGEF4Q8WZA2 1011 aa16.36■□□□□ 0.21
CTDNEP1-212ENST00000576613 FBLN1P23142 703 aa16.34■□□□□ 0.21
CTDNEP1-212ENST00000576613 TATP17735 454 aaPredicted RBP16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 RRS1Q15050 365 aaKnown RBP16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 NBPF6Q5VWK0 638 aa16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 COL23A1Q86Y22 540 aaPredicted RBP16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 NBPF4Q96M43 638 aa16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 PCDH11XQ9BZA7 1347 aa16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 PCDH11YQ9BZA8 1340 aa16.33■□□□□ 0.2
CTDNEP1-212ENST00000576613 USHBP1Q8N6Y0 703 aa16.32■□□□□ 0.2
CTDNEP1-212ENST00000576613 FLAD1Q8NFF5 587 aa16.32■□□□□ 0.2
CTDNEP1-212ENST00000576613 KIF20BQ96Q89 1820 aa16.32■□□□□ 0.2
CTDNEP1-212ENST00000576613 TAF1LQ8IZX4 1826 aa16.31■□□□□ 0.2
CTDNEP1-212ENST00000576613 YBX3P16989 372 aaKnown RBP eCLIP16.31■□□□□ 0.22e-6■■□□□ 13.2
CTDNEP1-212ENST00000576613 GGNBP2Q9H3C7 697 aa16.31■□□□□ 0.2
CTDNEP1-212ENST00000576613 INSRP06213 1382 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 KIF24Q5T7B8 1368 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 PALLDQ8WX93 1383 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 FYB1O15117 783 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 TMF1P82094 1093 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 MSL1Q68DK7 614 aa16.3■□□□□ 0.2
CTDNEP1-212ENST00000576613 FLT4P35916 1363 aa16.29■□□□□ 0.2
CTDNEP1-212ENST00000576613 CD2APQ9Y5K6 639 aa16.29■□□□□ 0.2
CTDNEP1-212ENST00000576613 MPRIPQ6WCQ1 1025 aa16.28■□□□□ 0.2
CTDNEP1-212ENST00000576613 C4BP0C0L5 1744 aa16.28■□□□□ 0.2
CTDNEP1-212ENST00000576613 ITGB4P16144 1822 aa16.27■□□□□ 0.2
CTDNEP1-212ENST00000576613 HSP90AB2PQ58FF8 381 aa16.27■□□□□ 0.2
CTDNEP1-212ENST00000576613 SMARCC1Q92922 1105 aaPredicted RBP16.27■□□□□ 0.2
CTDNEP1-212ENST00000576613 PKD1L3Q7Z443 1732 aa16.27■□□□□ 0.19
CTDNEP1-212ENST00000576613 TOGARAM1Q9Y4F4 1720 aa16.27■□□□□ 0.19
CTDNEP1-212ENST00000576613 NSD3Q9BZ95 1437 aa16.27■□□□□ 0.19
CTDNEP1-212ENST00000576613 CDCA8Q53HL2 280 aa16.26■□□□□ 0.19
CTDNEP1-212ENST00000576613 AK7Q96M32 723 aa16.26■□□□□ 0.19
CTDNEP1-212ENST00000576613 CEP350Q5VT06 3117 aa16.26■□□□□ 0.19
CTDNEP1-212ENST00000576613 ATP10DQ9P241 1426 aa16.25■□□□□ 0.19
CTDNEP1-212ENST00000576613 CYP27B1O15528 508 aa16.24■□□□□ 0.19
CTDNEP1-212ENST00000576613 UBR3Q6ZT12 1888 aa16.24■□□□□ 0.19
CTDNEP1-212ENST00000576613 GPBP1L1Q9HC44 474 aaPredicted RBP16.22■□□□□ 0.19
CTDNEP1-212ENST00000576613 ANKRD26Q9UPS8 1709 aa16.22■□□□□ 0.19
CTDNEP1-212ENST00000576613 SPG7Q9UQ90 795 aa16.21■□□□□ 0.19
CTDNEP1-212ENST00000576613 NCAPD2Q15021 1401 aa16.2■□□□□ 0.18
CTDNEP1-212ENST00000576613 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.2■□□□□ 0.18
CTDNEP1-212ENST00000576613 PHF14O94880 888 aa16.2■□□□□ 0.18
CTDNEP1-212ENST00000576613 SSFA2P28290 1259 aa16.2■□□□□ 0.18
CTDNEP1-212ENST00000576613 MAP2P11137 1827 aaKnown RBP16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 ADCY9O60503 1353 aa16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 NKX1-1Q15270 411 aaPredicted RBP16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 PIGBQ92521 554 aa16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 EMILIN1Q9Y6C2 1016 aa16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 IGSF1Q8N6C5 1336 aa16.19■□□□□ 0.18
CTDNEP1-212ENST00000576613 LOC102724428A0A0B4J2F2 783 aa16.18■□□□□ 0.18
CTDNEP1-212ENST00000576613 PPM1GO15355 546 aaPredicted RBP16.18■□□□□ 0.18
CTDNEP1-212ENST00000576613 SIK1P57059 783 aa16.18■□□□□ 0.18
CTDNEP1-212ENST00000576613 TMOD3Q9NYL9 352 aa16.18■□□□□ 0.18
CTDNEP1-212ENST00000576613 AMIGO3Q86WK7 504 aa16.17■□□□□ 0.18
CTDNEP1-212ENST00000576613 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.17■□□□□ 0.18
CTDNEP1-212ENST00000576613 IFFO2Q5TF58 517 aa16.16■□□□□ 0.18
CTDNEP1-212ENST00000576613 ZNF526Q8TF50 670 aaPredicted RBP16.16■□□□□ 0.18
CTDNEP1-212ENST00000576613 CARD14Q9BXL6 1004 aa16.16■□□□□ 0.18
CTDNEP1-212ENST00000576613 WASHC2AQ641Q2 1341 aa16.16■□□□□ 0.18
CTDNEP1-212ENST00000576613 LINC00116Q8NCU8 138 aa16.15■□□□□ 0.18
CTDNEP1-212ENST00000576613 GNPATO15228 680 aa16.14■□□□□ 0.17
CTDNEP1-212ENST00000576613 HSPA6P17066 643 aa16.14■□□□□ 0.17
CTDNEP1-212ENST00000576613 IFNL2Q8IZJ0 200 aa16.14■□□□□ 0.17
CTDNEP1-212ENST00000576613 CICQ96RK0 1608 aaPredicted RBP16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 ATP6V1AP38606 617 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 SMIM5Q71RC9 77 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 EYA1Q99502 592 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 WWC3Q9ULE0 1092 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 ASAP1Q9ULH1 1129 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 PLEKHG2Q9H7P9 1386 aa16.13■□□□□ 0.17
CTDNEP1-212ENST00000576613 PHKG2P15735 406 aa16.12■□□□□ 0.17
CTDNEP1-212ENST00000576613 KIF13BQ9NQT8 1826 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms