RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 L3MBTL2Q969R5 705 aa23.15■■□□□ 1.3
CLK3-223ENST00000568488 IP6K1Q92551 441 aa23.14■■□□□ 1.29
CLK3-223ENST00000568488 WWC3Q9ULE0 1092 aa23.13■■□□□ 1.29
CLK3-223ENST00000568488 HDGFL2Q7Z4V5 671 aaPredicted RBP23.12■■□□□ 1.29
CLK3-223ENST00000568488 ZCRB1Q8TBF4 217 aaKnown RBP23.12■■□□□ 1.29
CLK3-223ENST00000568488 NSD2O96028 1365 aa23.12■■□□□ 1.29
CLK3-223ENST00000568488 USP47Q96K76 1375 aa23.12■■□□□ 1.29
CLK3-223ENST00000568488 MON2Q7Z3U7 1717 aa23.11■■□□□ 1.29
CLK3-223ENST00000568488 ROCK2O75116 1388 aaKnown RBP23.11■■□□□ 1.29
CLK3-223ENST00000568488 SBNO2Q9Y2G9 1366 aa23.11■■□□□ 1.29
CLK3-223ENST00000568488 ADCY9O60503 1353 aa23.1■■□□□ 1.29
CLK3-223ENST00000568488 LY75O60449 1722 aa23.1■■□□□ 1.29
CLK3-223ENST00000568488 DOT1LQ8TEK3 1739 aa23.08■■□□□ 1.29
CLK3-223ENST00000568488 SLC12A5Q9H2X9 1139 aa23.08■■□□□ 1.29
CLK3-223ENST00000568488 FLAD1Q8NFF5 587 aa23.07■■□□□ 1.28
CLK3-223ENST00000568488 IGSF1Q8N6C5 1336 aa23.06■■□□□ 1.28
CLK3-223ENST00000568488 KIF3CO14782 793 aa23.05■■□□□ 1.28
CLK3-223ENST00000568488 USP54Q70EL1 1684 aa23.05■■□□□ 1.28
CLK3-223ENST00000568488 CD163L1Q9NR16 1453 aa23.05■■□□□ 1.28
CLK3-223ENST00000568488 AMPHP49418 695 aa23.04■■□□□ 1.28
CLK3-223ENST00000568488 APLP1P51693 650 aa23.03■■□□□ 1.28
CLK3-223ENST00000568488 TERF2IPQ9NYB0 399 aa23.03■■□□□ 1.28
CLK3-223ENST00000568488 EDC4Q6P2E9 1401 aaKnown RBP23.02■■□□□ 1.28
CLK3-223ENST00000568488 HOXC9P31274 260 aa23.02■■□□□ 1.28
CLK3-223ENST00000568488 FBLN1P23142 703 aa23.01■■□□□ 1.27
CLK3-223ENST00000568488 HMGB2P26583 209 aaKnown RBP23.01■■□□□ 1.27
CLK3-223ENST00000568488 MAP3K19Q56UN5 1328 aa23■■□□□ 1.27
CLK3-223ENST00000568488 FAM208AQ9UK61 1670 aaKnown RBP23■■□□□ 1.27
CLK3-223ENST00000568488 MEGF6O75095 1541 aa22.99■■□□□ 1.27
CLK3-223ENST00000568488 PHF14O94880 888 aa22.99■■□□□ 1.27
CLK3-223ENST00000568488 AK7Q96M32 723 aa22.99■■□□□ 1.27
CLK3-223ENST00000568488 SIN3AQ96ST3 1273 aa22.99■■□□□ 1.27
CLK3-223ENST00000568488 NEUROD1Q13562 356 aa22.98■■□□□ 1.27
CLK3-223ENST00000568488 MPRIPQ6WCQ1 1025 aa22.98■■□□□ 1.27
CLK3-223ENST00000568488 SMIM5Q71RC9 77 aa22.98■■□□□ 1.27
CLK3-223ENST00000568488 USHBP1Q8N6Y0 703 aa22.98■■□□□ 1.27
CLK3-223ENST00000568488 COG3Q96JB2 828 aa22.98■■□□□ 1.27
CLK3-223ENST00000568488 RAPGEF4Q8WZA2 1011 aa22.97■■□□□ 1.27
CLK3-223ENST00000568488 A0A1W2PP64 1363 aa22.97■■□□□ 1.27
CLK3-223ENST00000568488 PALLDQ8WX93 1383 aa22.97■■□□□ 1.27
CLK3-223ENST00000568488 NBPF6Q5VWK0 638 aa22.96■■□□□ 1.27
CLK3-223ENST00000568488 DNAJC5GQ8N7S2 189 aa22.96■■□□□ 1.27
CLK3-223ENST00000568488 NBPF4Q96M43 638 aa22.96■■□□□ 1.27
CLK3-223ENST00000568488 C5P01031 1676 aa22.96■■□□□ 1.27
CLK3-223ENST00000568488 TOMM70O94826 608 aa22.95■■□□□ 1.26
CLK3-223ENST00000568488 RGPD2P0DJD1 1756 aa22.94■■□□□ 1.26
CLK3-223ENST00000568488 TATP17735 454 aaPredicted RBP22.94■■□□□ 1.26
CLK3-223ENST00000568488 AMIGO3Q86WK7 504 aa22.94■■□□□ 1.26
CLK3-223ENST00000568488 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.93■■□□□ 1.26
CLK3-223ENST00000568488 CGNL1Q0VF96 1302 aa22.92■■□□□ 1.26
CLK3-223ENST00000568488 CARD11Q9BXL7 1154 aa22.92■■□□□ 1.26
CLK3-223ENST00000568488 CAPN15O75808 1086 aa22.91■■□□□ 1.26
CLK3-223ENST00000568488 SMARCC1Q92922 1105 aaPredicted RBP22.91■■□□□ 1.26
CLK3-223ENST00000568488 RRS1Q15050 365 aaKnown RBP22.9■■□□□ 1.26
CLK3-223ENST00000568488 PCDH11XQ9BZA7 1347 aa22.88■■□□□ 1.25
CLK3-223ENST00000568488 PCDH11YQ9BZA8 1340 aa22.88■■□□□ 1.25
CLK3-223ENST00000568488 TAF1LQ8IZX4 1826 aa22.88■■□□□ 1.25
CLK3-223ENST00000568488 C4BP0C0L5 1744 aa22.88■■□□□ 1.25
CLK3-223ENST00000568488 COL13A1Q5TAT6 717 aaPredicted RBP22.87■■□□□ 1.25
CLK3-223ENST00000568488 NMRK2Q9NPI5 230 aa22.87■■□□□ 1.25
CLK3-223ENST00000568488 BCS1LQ9Y276 419 aa22.87■■□□□ 1.25
CLK3-223ENST00000568488 SSFA2P28290 1259 aa22.86■■□□□ 1.25
CLK3-223ENST00000568488 ARHGAP27Q6ZUM4 889 aa22.86■■□□□ 1.25
CLK3-223ENST00000568488 NSD3Q9BZ95 1437 aa22.85■■□□□ 1.25
CLK3-223ENST00000568488 HTRA3P83110 453 aa22.85■■□□□ 1.25
CLK3-223ENST00000568488 SMG6Q86US8 1419 aaKnown RBP22.84■■□□□ 1.25
CLK3-223ENST00000568488 CYP27B1O15528 508 aa22.84■■□□□ 1.25
CLK3-223ENST00000568488 C16orf71Q8IYS4 520 aaPredicted RBP22.84■■□□□ 1.25
CLK3-223ENST00000568488 A0A0G2JLW4 131 aa22.83■■□□□ 1.25
CLK3-223ENST00000568488 MMP10P09238 476 aa22.83■■□□□ 1.25
CLK3-223ENST00000568488 LINC00116Q8NCU8 138 aa22.83■■□□□ 1.25
CLK3-223ENST00000568488 PIGBQ92521 554 aa22.83■■□□□ 1.25
CLK3-223ENST00000568488 PUS7Q96PZ0 661 aaKnown RBP22.83■■□□□ 1.25
CLK3-223ENST00000568488 RTL1A6NKG5 1358 aa22.83■■□□□ 1.25
CLK3-223ENST00000568488 GNPATO15228 680 aa22.82■■□□□ 1.24
CLK3-223ENST00000568488 TOGARAM1Q9Y4F4 1720 aa22.82■■□□□ 1.24
CLK3-223ENST00000568488 LOC102724428A0A0B4J2F2 783 aa22.81■■□□□ 1.24
CLK3-223ENST00000568488 SIK1P57059 783 aa22.81■■□□□ 1.24
CLK3-223ENST00000568488 KLRG1Q96E93 195 aa22.81■■□□□ 1.24
CLK3-223ENST00000568488 UBR3Q6ZT12 1888 aa22.81■■□□□ 1.24
CLK3-223ENST00000568488 TGFB2P61812 414 aa22.8■■□□□ 1.24
CLK3-223ENST00000568488 HSP90AB2PQ58FF8 381 aa22.8■■□□□ 1.24
CLK3-223ENST00000568488 RBM46Q8TBY0 533 aaKnown RBP22.8■■□□□ 1.24
CLK3-223ENST00000568488 GGNBP2Q9H3C7 697 aa22.8■■□□□ 1.24
CLK3-223ENST00000568488 FCHSD2O94868 740 aa22.79■■□□□ 1.24
CLK3-223ENST00000568488 CICQ96RK0 1608 aaPredicted RBP22.79■■□□□ 1.24
CLK3-223ENST00000568488 ATP6V1AP38606 617 aa22.78■■□□□ 1.24
CLK3-223ENST00000568488 TNS4Q8IZW8 715 aa22.78■■□□□ 1.24
CLK3-223ENST00000568488 PXDNLA1KZ92 1463 aa22.78■■□□□ 1.24
CLK3-223ENST00000568488 WDR90Q96KV7 1748 aa22.77■■□□□ 1.23
CLK3-223ENST00000568488 ITGB4P16144 1822 aa22.76■■□□□ 1.23
CLK3-223ENST00000568488 ITPK1Q13572 414 aa22.76■■□□□ 1.23
CLK3-223ENST00000568488 JMYQ8N9B5 988 aa22.76■■□□□ 1.23
CLK3-223ENST00000568488 FYB1O15117 783 aa22.75■■□□□ 1.23
CLK3-223ENST00000568488 DPEP1P16444 411 aa22.75■■□□□ 1.23
CLK3-223ENST00000568488 C9orf131Q5VYM1 1079 aa22.75■■□□□ 1.23
CLK3-223ENST00000568488 TMOD3Q9NYL9 352 aa22.75■■□□□ 1.23
CLK3-223ENST00000568488 ASAP1Q9ULH1 1129 aa22.75■■□□□ 1.23
CLK3-223ENST00000568488 N4BP2Q86UW6 1770 aaPredicted RBP22.74■■□□□ 1.23
CLK3-223ENST00000568488 TMF1P82094 1093 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms