RNA–Protein interactions for RNA: ENST00000568095.5

LINC01541-202, Transcript of long intergenic non-protein coding RNA 1541, humanhuman

TSL 1 (best) BASIC

Gene LINC01541, Length 3,105 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01541-202ENST00000568095 KCNA6P17658 529 aa6.86□□□□□ -1.31
LINC01541-202ENST00000568095 UPF2Q9HAU5 1272 aaKnown RBP6.86□□□□□ -1.31
LINC01541-202ENST00000568095 LTN1O94822 1766 aa6.86□□□□□ -1.31
LINC01541-202ENST00000568095 ABCA3Q99758 1704 aa6.86□□□□□ -1.31
LINC01541-202ENST00000568095 CLEC17AQ6ZS10 378 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 SNX21Q969T3 373 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 NCKAP5LQ9HCH0 1330 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 NHSL1Q5SYE7 1610 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 PLEKHG3A1L390 1219 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 GAS2L3Q86XJ1 694 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 GTPBP6O43824 516 aaPredicted RBP6.85□□□□□ -1.31
LINC01541-202ENST00000568095 RIPK4P57078 832 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 SMC5Q8IY18 1101 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 PCDHB15Q9Y5E8 787 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 NFAT5O94916 1531 aa6.85□□□□□ -1.31
LINC01541-202ENST00000568095 SLIT3O75094 1523 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 PTMSP20962 102 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 BCL11BQ9C0K0 894 aaPredicted RBP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 PDZRN3Q9UPQ7 1066 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 MED1Q15648 1581 aaPredicted RBP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 USP31Q70CQ4 1352 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 CDK12Q9NYV4 1490 aaPredicted RBP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 RBM25P49756 843 aaKnown RBP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 CCDC173Q0VFZ6 552 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 SAFB2Q14151 953 aaKnown RBP eCLIP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 SKOR2Q2VWA4 1001 aaPredicted RBP6.84□□□□□ -1.31
LINC01541-202ENST00000568095 HS1BP3Q53T59 392 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 PLCD3Q8N3E9 789 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 MAP7D2Q96T17 732 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 LTBP4Q8N2S1 1624 aa6.84□□□□□ -1.31
LINC01541-202ENST00000568095 AATKQ6ZMQ8 1374 aa6.84□□□□□ -1.32
LINC01541-202ENST00000568095 RAB3GAP1Q15042 981 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 NUDT16Q96DE0 195 aaKnown RBP6.83□□□□□ -1.32
LINC01541-202ENST00000568095 C22orf23Q9BZE7 217 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 GZF1Q9H116 711 aaPredicted RBP6.83□□□□□ -1.32
LINC01541-202ENST00000568095 KNSTRNQ9Y448 316 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 KIAA1211Q6ZU35 1233 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 PANK1Q8TE04 598 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 LMO7Q8WWI1 1683 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 DLG5Q8TDM6 1919 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 APAF1O14727 1248 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 FYB1O15117 783 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 RARSP54136 660 aaKnown RBP6.83□□□□□ -1.32
LINC01541-202ENST00000568095 NKX1-1Q15270 411 aaPredicted RBP6.83□□□□□ -1.32
LINC01541-202ENST00000568095 ZSCAN30Q86W11 494 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 CABP1Q9NZU7 370 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 COG6Q9Y2V7 657 aa6.83□□□□□ -1.32
LINC01541-202ENST00000568095 COL18A1P39060 1754 aa6.82□□□□□ -1.32
LINC01541-202ENST00000568095 CCDC61Q9Y6R9 512 aa6.82□□□□□ -1.32
LINC01541-202ENST00000568095 SRPK2P78362 688 aaKnown RBP6.82□□□□□ -1.32
LINC01541-202ENST00000568095 WWC1Q8IX03 1113 aa6.82□□□□□ -1.32
LINC01541-202ENST00000568095 TNPO1Q92973 898 aaKnown RBP6.82□□□□□ -1.32
LINC01541-202ENST00000568095 ZNF500O60304 480 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 SMAP1Q8IYB5 467 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 RWDD1Q9H446 243 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 SLC24A3Q9HC58 644 aa6.81□□□□□ -1.32
LINC01541-202ENST00000568095 C1orf167Q5SNV9 1468 aa6.81□□□□□ -1.32
LINC01541-202ENST00000568095 PXDNQ92626 1479 aa6.81□□□□□ -1.32
LINC01541-202ENST00000568095 ABCB7O75027 752 aa6.81□□□□□ -1.32
LINC01541-202ENST00000568095 RLBP1P12271 317 aa6.81□□□□□ -1.32
LINC01541-202ENST00000568095 TRIM44Q96DX7 344 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 HDAC1Q13547 482 aaPredicted RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 ZC3H15Q8WU90 426 aaKnown RBP6.81□□□□□ -1.32
LINC01541-202ENST00000568095 CCDC27Q2M243 656 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 CCDC146Q8IYE0 955 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 PDLIM2Q96JY6 352 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 TERF2IPQ9NYB0 399 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 ABCC6O95255 1503 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.8□□□□□ -1.32
LINC01541-202ENST00000568095 LRRC37A3O60309 1634 aa6.8□□□□□ -1.32
LINC01541-202ENST00000568095 RGPD2P0DJD1 1756 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 ZNF445P59923 1031 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 MTERF4Q7Z6M4 381 aaKnown RBP6.79□□□□□ -1.32
LINC01541-202ENST00000568095 WDR63Q8IWG1 891 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 HSCBQ8IWL3 235 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 NOL7Q9UMY1 257 aaKnown RBP6.79□□□□□ -1.32
LINC01541-202ENST00000568095 ACEP12821 1306 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 GBP4Q96PP9 640 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 KIF2CQ99661 725 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 RGPD5Q99666 1765 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 MVPQ14764 893 aaKnown RBP6.79□□□□□ -1.32
LINC01541-202ENST00000568095 UTP14CQ5TAP6 766 aaKnown RBP6.79□□□□□ -1.32
LINC01541-202ENST00000568095 C1orf115Q9H7X2 142 aa6.79□□□□□ -1.32
LINC01541-202ENST00000568095 TTC21BQ7Z4L5 1316 aa6.78□□□□□ -1.32
LINC01541-202ENST00000568095 COL22A1Q8NFW1 1626 aaPredicted RBP6.78□□□□□ -1.32
LINC01541-202ENST00000568095 NCAPD2Q15021 1401 aa6.78□□□□□ -1.32
LINC01541-202ENST00000568095 KLHL40Q2TBA0 621 aa6.78□□□□□ -1.32
LINC01541-202ENST00000568095 TTC21AQ8NDW8 1320 aa6.78□□□□□ -1.32
LINC01541-202ENST00000568095 TMEM94Q12767 1356 aa6.78□□□□□ -1.32
LINC01541-202ENST00000568095 HDGFL2Q7Z4V5 671 aaPredicted RBP6.78□□□□□ -1.32
LINC01541-202ENST00000568095 FAM208AQ9UK61 1670 aaKnown RBP6.78□□□□□ -1.32
LINC01541-202ENST00000568095 DYNC1I1O14576 645 aa6.77□□□□□ -1.33
LINC01541-202ENST00000568095 MCM5P33992 734 aa6.77□□□□□ -1.33
LINC01541-202ENST00000568095 NASPP49321 788 aaPredicted RBP6.77□□□□□ -1.33
LINC01541-202ENST00000568095 HSPA2P54652 639 aa6.77□□□□□ -1.33
LINC01541-202ENST00000568095 TNNQ9UQP3 1299 aa6.77□□□□□ -1.33
LINC01541-202ENST00000568095 ADAMTS7Q9UKP4 1686 aa6.77□□□□□ -1.33
LINC01541-202ENST00000568095 CT47B1P0C2W7 299 aaPredicted RBP6.77□□□□□ -1.33
LINC01541-202ENST00000568095 AHDC1Q5TGY3 1603 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms