RNA–Protein interactions for RNA: ENST00000564642.1

SYNGR3-204, Transcript of synaptogyrin 3, humanhuman

TSL 2

Gene SYNGR3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGR3-204ENST00000564642 LRP5O75197 1615 aa25.04■■□□□ 1.6
SYNGR3-204ENST00000564642 RREB1Q92766 1687 aa25.04■■□□□ 1.6
SYNGR3-204ENST00000564642 PSDA5PKW4 1024 aaPredicted RBP25.03■■□□□ 1.6
SYNGR3-204ENST00000564642 AMER1Q5JTC6 1135 aaPredicted RBP25.03■■□□□ 1.6
SYNGR3-204ENST00000564642 NHSQ6T4R5 1651 aa25.02■■□□□ 1.6
SYNGR3-204ENST00000564642 NBPF14Q5TI25 921 aa25.02■■□□□ 1.6
SYNGR3-204ENST00000564642 RGPD3A6NKT7 1758 aaPredicted RBP25.01■■□□□ 1.59
SYNGR3-204ENST00000564642 RGPD4Q7Z3J3 1758 aa25.01■■□□□ 1.59
SYNGR3-204ENST00000564642 PER1O15534 1290 aaPredicted RBP25.01■■□□□ 1.59
SYNGR3-204ENST00000564642 NUP188Q5SRE5 1749 aa25■■□□□ 1.59
SYNGR3-204ENST00000564642 R3HDM1Q15032 1099 aaKnown RBP25■■□□□ 1.59
SYNGR3-204ENST00000564642 EYA1Q99502 592 aa25■■□□□ 1.59
SYNGR3-204ENST00000564642 EIF4A2Q14240 407 aaKnown RBP24.99■■□□□ 1.59
SYNGR3-204ENST00000564642 SHANK3Q9BYB0 1731 aa24.99■■□□□ 1.59
SYNGR3-204ENST00000564642 CC2D1BQ5T0F9 858 aaKnown RBP24.97■■□□□ 1.59
SYNGR3-204ENST00000564642 PCDH11XQ9BZA7 1347 aa24.95■■□□□ 1.58
SYNGR3-204ENST00000564642 PCDH11YQ9BZA8 1340 aa24.95■■□□□ 1.58
SYNGR3-204ENST00000564642 SYTL4Q96C24 671 aaPredicted RBP24.95■■□□□ 1.58
SYNGR3-204ENST00000564642 BTAF1O14981 1849 aa24.95■■□□□ 1.58
SYNGR3-204ENST00000564642 NCAPD2Q15021 1401 aa24.95■■□□□ 1.58
SYNGR3-204ENST00000564642 TXNRD1Q16881 649 aa24.94■■□□□ 1.58
SYNGR3-204ENST00000564642 DOT1LQ8TEK3 1739 aa24.93■■□□□ 1.58
SYNGR3-204ENST00000564642 PRIM1P49642 420 aaKnown RBP24.93■■□□□ 1.58
SYNGR3-204ENST00000564642 CNGB1Q14028 1251 aaPredicted RBP24.93■■□□□ 1.58
SYNGR3-204ENST00000564642 PROM2Q8N271 834 aa24.93■■□□□ 1.58
SYNGR3-204ENST00000564642 SPG7Q9UQ90 795 aa24.93■■□□□ 1.58
SYNGR3-204ENST00000564642 IFFO2Q5TF58 517 aa24.91■■□□□ 1.58
SYNGR3-204ENST00000564642 NPC1L1Q9UHC9 1359 aa24.9■■□□□ 1.58
SYNGR3-204ENST00000564642 PKD1L3Q7Z443 1732 aa24.89■■□□□ 1.58
SYNGR3-204ENST00000564642 IGSF1Q8N6C5 1336 aa24.89■■□□□ 1.58
SYNGR3-204ENST00000564642 YY1P25490 414 aa24.89■■□□□ 1.58
SYNGR3-204ENST00000564642 MTHFSP49914 203 aa24.89■■□□□ 1.58
SYNGR3-204ENST00000564642 CYP27B1O15528 508 aa24.88■■□□□ 1.57
SYNGR3-204ENST00000564642 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.88■■□□□ 1.57
SYNGR3-204ENST00000564642 STK32BQ9NY57 414 aa24.84■■□□□ 1.57
SYNGR3-204ENST00000564642 IL13P35225 146 aa24.83■■□□□ 1.57
SYNGR3-204ENST00000564642 IFNL2Q8IZJ0 200 aa24.83■■□□□ 1.57
SYNGR3-204ENST00000564642 ANO8Q9HCE9 1232 aaPredicted RBP24.83■■□□□ 1.57
SYNGR3-204ENST00000564642 NKX1-1Q15270 411 aaPredicted RBP24.82■■□□□ 1.56
SYNGR3-204ENST00000564642 PLEKHG2Q9H7P9 1386 aa24.81■■□□□ 1.56
SYNGR3-204ENST00000564642 PLEKHO1Q53GL0 409 aaPredicted RBP24.81■■□□□ 1.56
SYNGR3-204ENST00000564642 SULT6B1Q6IMI4 303 aa24.81■■□□□ 1.56
SYNGR3-204ENST00000564642 SLC27A3Q5K4L6 730 aa24.8■■□□□ 1.56
SYNGR3-204ENST00000564642 MPRIPQ6WCQ1 1025 aa24.8■■□□□ 1.56
SYNGR3-204ENST00000564642 PHKG2P15735 406 aa24.79■■□□□ 1.56
SYNGR3-204ENST00000564642 SLC15A2Q16348 729 aa24.79■■□□□ 1.56
SYNGR3-204ENST00000564642 ITGB4P16144 1822 aa24.79■■□□□ 1.56
SYNGR3-204ENST00000564642 DIAPH1O60610 1272 aaKnown RBP24.78■■□□□ 1.56
SYNGR3-204ENST00000564642 AMOTQ4VCS5 1084 aa24.78■■□□□ 1.56
SYNGR3-204ENST00000564642 AEBP1Q8IUX7 1158 aa24.78■■□□□ 1.56
SYNGR3-204ENST00000564642 LRRC4BQ9NT99 713 aa24.78■■□□□ 1.56
SYNGR3-204ENST00000564642 LY75O60449 1722 aa24.77■■□□□ 1.56
SYNGR3-204ENST00000564642 TOGARAM1Q9Y4F4 1720 aa24.77■■□□□ 1.56
SYNGR3-204ENST00000564642 HSP90AB1P08238 724 aaKnown RBP24.74■■□□□ 1.55
SYNGR3-204ENST00000564642 ZNF530Q6P9A1 599 aaPredicted RBP24.74■■□□□ 1.55
SYNGR3-204ENST00000564642 CCNL1Q9UK58 526 aaPredicted RBP24.74■■□□□ 1.55
SYNGR3-204ENST00000564642 KDRP35968 1356 aa24.74■■□□□ 1.55
SYNGR3-204ENST00000564642 KCNQ4P56696 695 aa24.73■■□□□ 1.55
SYNGR3-204ENST00000564642 SPON1Q9HCB6 807 aa24.73■■□□□ 1.55
SYNGR3-204ENST00000564642 TMOD3Q9NYL9 352 aa24.73■■□□□ 1.55
SYNGR3-204ENST00000564642 PAPPAQ13219 1627 aa24.72■■□□□ 1.55
SYNGR3-204ENST00000564642 HMOX1P09601 288 aa24.72■■□□□ 1.55
SYNGR3-204ENST00000564642 C1orf141Q5JVX7 400 aa24.72■■□□□ 1.55
SYNGR3-204ENST00000564642 PIGBQ92521 554 aa24.72■■□□□ 1.55
SYNGR3-204ENST00000564642 SMARCC1Q92922 1105 aaPredicted RBP24.72■■□□□ 1.55
SYNGR3-204ENST00000564642 CFAP53Q96M91 514 aa24.71■■□□□ 1.55
SYNGR3-204ENST00000564642 PALLDQ8WX93 1383 aa24.7■■□□□ 1.55
SYNGR3-204ENST00000564642 HMGB2P26583 209 aaKnown RBP24.7■■□□□ 1.54
SYNGR3-204ENST00000564642 DCAF5Q96JK2 942 aa24.7■■□□□ 1.54
SYNGR3-204ENST00000564642 PDGFDQ9GZP0 370 aaPredicted RBP24.7■■□□□ 1.54
SYNGR3-204ENST00000564642 CASZ1Q86V15 1759 aa24.7■■□□□ 1.54
SYNGR3-204ENST00000564642 U2SURPO15042 1029 aaKnown RBP24.69■■□□□ 1.54
SYNGR3-204ENST00000564642 ZNF827Q17R98 1081 aa24.69■■□□□ 1.54
SYNGR3-204ENST00000564642 AKT1S1Q96B36 256 aa24.68■■□□□ 1.54
SYNGR3-204ENST00000564642 ERVV-2B6SEH9 535 aa24.67■■□□□ 1.54
SYNGR3-204ENST00000564642 PPP2R1AP30153 589 aa24.67■■□□□ 1.54
SYNGR3-204ENST00000564642 TFCP2L1Q9NZI6 479 aa24.67■■□□□ 1.54
SYNGR3-204ENST00000564642 COL3A1P02461 1466 aaPredicted RBP24.66■■□□□ 1.54
SYNGR3-204ENST00000564642 ZBTB7AO95365 584 aa24.66■■□□□ 1.54
SYNGR3-204ENST00000564642 ZEB1P37275 1124 aaPredicted RBP24.66■■□□□ 1.54
SYNGR3-204ENST00000564642 PPP1R1BQ9UD71 204 aaPredicted RBP24.65■■□□□ 1.54
SYNGR3-204ENST00000564642 CABP4P57796 275 aa24.64■■□□□ 1.54
SYNGR3-204ENST00000564642 AKAP4Q5JQC9 854 aa24.64■■□□□ 1.54
SYNGR3-204ENST00000564642 ASAP1Q9ULH1 1129 aa24.64■■□□□ 1.54
SYNGR3-204ENST00000564642 NUDCQ9Y266 331 aa24.63■■□□□ 1.53
SYNGR3-204ENST00000564642 ATF5Q9Y2D1 282 aaPredicted RBP24.63■■□□□ 1.53
SYNGR3-204ENST00000564642 C5P01031 1676 aa24.62■■□□□ 1.53
SYNGR3-204ENST00000564642 QSER1Q2KHR3 1735 aa24.62■■□□□ 1.53
SYNGR3-204ENST00000564642 TAF1LQ8IZX4 1826 aa24.62■■□□□ 1.53
SYNGR3-204ENST00000564642 KDM6AO15550 1401 aaPredicted RBP24.61■■□□□ 1.53
SYNGR3-204ENST00000564642 DDX10Q13206 875 aaKnown RBP24.61■■□□□ 1.53
SYNGR3-204ENST00000564642 MTFR1LQ9H019 292 aa24.61■■□□□ 1.53
SYNGR3-204ENST00000564642 ATG3Q9NT62 314 aa24.61■■□□□ 1.53
SYNGR3-204ENST00000564642 LOC102724428A0A0B4J2F2 783 aa24.6■■□□□ 1.53
SYNGR3-204ENST00000564642 SIK1P57059 783 aa24.6■■□□□ 1.53
SYNGR3-204ENST00000564642 TUBGCP6Q96RT7 1819 aa24.59■■□□□ 1.53
SYNGR3-204ENST00000564642 MTHFSDQ2M296 383 aaKnown RBP24.59■■□□□ 1.53
SYNGR3-204ENST00000564642 SCN11AQ9UI33 1791 aa24.59■■□□□ 1.53
SYNGR3-204ENST00000564642 PNPLA7Q6ZV29 1317 aa24.59■■□□□ 1.53
SYNGR3-204ENST00000564642 SENP3-EIF4A1A0A087X0R7 540 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms