RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 SERPINB4P48594 390 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 SLC10A4Q96EP9 437 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 UNCXA6NJT0 531 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 USP4Q13107 963 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 NKX2-3Q8TAU0 364 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 FCF1Q9Y324 198 aaKnown RBP4.35□□□□□ -1.71
CHD9-209ENST00000564255 PCDHB11Q9Y5F2 797 aa4.35□□□□□ -1.71
CHD9-209ENST00000564255 MAP4K5Q9Y4K4 846 aa4.34□□□□□ -1.71
CHD9-209ENST00000564255 PRMT3O60678 531 aa4.34□□□□□ -1.72
CHD9-209ENST00000564255 NBPF20Q3BBV1 942 aa4.34□□□□□ -1.72
CHD9-209ENST00000564255 PRIMPOLQ96LW4 560 aa4.34□□□□□ -1.72
CHD9-209ENST00000564255 WEE1P30291 646 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 SCNN1AP37088 669 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 TPCN2Q8NHX9 752 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 AGERQ15109 404 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 ECM1Q16610 540 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 COL26A1Q96A83 441 aa4.33□□□□□ -1.72
CHD9-209ENST00000564255 ICMTO60725 284 aa4.32□□□□□ -1.72
CHD9-209ENST00000564255 IGSF5Q9NSI5 407 aa4.32□□□□□ -1.72
CHD9-209ENST00000564255 RBM19Q9Y4C8 960 aaKnown RBP4.32□□□□□ -1.72
CHD9-209ENST00000564255 VARSP26640 1264 aaKnown RBP4.32□□□□□ -1.72
CHD9-209ENST00000564255 KCTD15Q96SI1 283 aaPredicted RBP4.32□□□□□ -1.72
CHD9-209ENST00000564255 ZNF358Q9NW07 568 aa4.32□□□□□ -1.72
CHD9-209ENST00000564255 PTPN5P54829 565 aa4.32□□□□□ -1.72
CHD9-209ENST00000564255 MARSP56192 900 aaKnown RBP4.32□□□□□ -1.72
CHD9-209ENST00000564255 ERVK-9P63128 1117 aa4.32□□□□□ -1.72
CHD9-209ENST00000564255 WASLO00401 505 aaPredicted RBP4.31□□□□□ -1.72
CHD9-209ENST00000564255 MYCP01106 439 aaPredicted RBP4.31□□□□□ -1.72
CHD9-209ENST00000564255 WNT7BP56706 349 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 SKOR1P84550 965 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 INTS6LQ5JSJ4 861 aaKnown RBP4.31□□□□□ -1.72
CHD9-209ENST00000564255 MPNDQ8N594 471 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.31□□□□□ -1.72
CHD9-209ENST00000564255 TMEM229AB2RXF0 380 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 PPEF1O14829 653 aaPredicted RBP4.31□□□□□ -1.72
CHD9-209ENST00000564255 PTCD1O75127 700 aaKnown RBP4.31□□□□□ -1.72
CHD9-209ENST00000564255 IGFBP4P22692 258 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 RPIAP49247 311 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 NPAS4Q8IUM7 802 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 CDK15Q96Q40 435 aa4.31□□□□□ -1.72
CHD9-209ENST00000564255 ERVH48-1M5A8F1 160 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 ITGBL1O95965 494 aaPredicted RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 PSME1Q06323 249 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 FKBP5Q13451 457 aaPredicted RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 ANKLE1Q8NAG6 615 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 FOXO3O43524 673 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 C21orf2O43822 256 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 NPR3P17342 541 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 SCTRP47872 440 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 PLA2G2CQ5R387 149 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 CC2D2BQ6DHV5 1058 aa4.3□□□□□ -1.72
CHD9-209ENST00000564255 TSEN2Q8NCE0 465 aaKnown RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 PURBQ96QR8 312 aaKnown RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 BIN2Q9UBW5 565 aaPredicted RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 DNMT3AQ9Y6K1 912 aaPredicted RBP4.3□□□□□ -1.72
CHD9-209ENST00000564255 SCNN1DP51172 638 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 TRIM32Q13049 653 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 ZNF211Q13398 564 aaPredicted RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 GTF3C2Q8WUA4 911 aaPredicted RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 HINFPQ9BQA5 517 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 OSBPL3Q9H4L5 887 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 RNF223E7ERA6 249 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 H3BRB1 525 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 ZBTB24O43167 697 aaPredicted RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 ZNF16P17020 682 aaPredicted RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 EPHA4P54764 986 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 SF3B2Q13435 895 aaKnown RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 GAS2L2Q8NHY3 880 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 TRIM52Q96A61 297 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 TUT1Q9H6E5 874 aaKnown RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 KIAA1522Q9P206 1035 aaPredicted RBP4.29□□□□□ -1.72
CHD9-209ENST00000564255 SEPT3Q9UH03 358 aa4.29□□□□□ -1.72
CHD9-209ENST00000564255 ANKRD33BA6NCL7 494 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 VASH1Q7L8A9 365 aaPredicted RBP4.28□□□□□ -1.72
CHD9-209ENST00000564255 ABL1P00519 1130 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 ARHGAP4P98171 946 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 FKBP4Q02790 459 aaKnown RBP eCLIP4.28□□□□□ -1.72
CHD9-209ENST00000564255 COL19A1Q14993 1142 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 FBXO33Q7Z6M2 555 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 ASB16Q96NS5 453 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 SLC4A9Q96Q91 983 aa4.28□□□□□ -1.72
CHD9-209ENST00000564255 LGR5O75473 907 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 VAMP1P23763 118 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 GDF10P55107 478 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 FOXK2Q01167 660 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 KCNC4Q03721 635 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 CAPN12Q6ZSI9 719 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 GLYCTKQ8IVS8 523 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 BCL2L13Q9BXK5 485 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 ANO2Q9NQ90 1003 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 DCTN4Q9UJW0 460 aa4.28□□□□□ -1.73
CHD9-209ENST00000564255 BACH1O14867 736 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 GRM5P41594 1212 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 DHX9Q08211 1270 aaKnown RBP4.27□□□□□ -1.73
CHD9-209ENST00000564255 STAG2Q8N3U4 1231 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 HELQQ8TDG4 1101 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 MRRFQ96E11 262 aaKnown RBP4.27□□□□□ -1.73
CHD9-209ENST00000564255 SIAH2O43255 324 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 LILRA1O75019 489 aa4.27□□□□□ -1.73
CHD9-209ENST00000564255 INHAP05111 366 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms