RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ATP7BP35670 1465 aa16.28■□□□□ 0.2
CLN3-210ENST00000563874 INTS3Q68E01 1043 aaKnown RBP16.28■□□□□ 0.2
CLN3-210ENST00000563874 CEP85Q6P2H3 762 aa16.28■□□□□ 0.2
CLN3-210ENST00000563874 KNDC1Q76NI1 1749 aa16.28■□□□□ 0.2
CLN3-210ENST00000563874 NUDT16Q96DE0 195 aaKnown RBP16.27■□□□□ 0.2
CLN3-210ENST00000563874 SOX12O15370 315 aa16.27■□□□□ 0.2
CLN3-210ENST00000563874 FOXD4L5Q5VV16 416 aaPredicted RBP16.27■□□□□ 0.2
CLN3-210ENST00000563874 FOXD4L4Q8WXT5 416 aaPredicted RBP16.27■□□□□ 0.2
CLN3-210ENST00000563874 BCL11BQ9C0K0 894 aaPredicted RBP16.27■□□□□ 0.2
CLN3-210ENST00000563874 MIS18AQ9NYP9 233 aa16.27■□□□□ 0.2
CLN3-210ENST00000563874 EDC4Q6P2E9 1401 aaKnown RBP16.27■□□□□ 0.19
CLN3-210ENST00000563874 MSH6P52701 1360 aa16.27■□□□□ 0.19
CLN3-210ENST00000563874 MLECQ14165 292 aa16.27■□□□□ 0.19
CLN3-210ENST00000563874 ATP10DQ9P241 1426 aa16.26■□□□□ 0.19
CLN3-210ENST00000563874 CLEC17AQ6ZS10 378 aa16.26■□□□□ 0.19
CLN3-210ENST00000563874 CDK12Q9NYV4 1490 aaPredicted RBP16.26■□□□□ 0.19
CLN3-210ENST00000563874 NUTM2FA1L443 756 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 CPSF1Q10570 1443 aaKnown RBP16.25■□□□□ 0.19
CLN3-210ENST00000563874 NUCB2P80303 420 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 CCDC173Q0VFZ6 552 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 ANP32BQ92688 251 aaKnown RBP16.25■□□□□ 0.19
CLN3-210ENST00000563874 PRPF40AO75400 957 aaKnown RBP16.25■□□□□ 0.19
CLN3-210ENST00000563874 TSHZ3Q63HK5 1081 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 SLC4A10Q6U841 1118 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 LMBRD1Q9NUN5 540 aa16.25■□□□□ 0.19
CLN3-210ENST00000563874 CPS1P31327 1500 aa16.24■□□□□ 0.19
CLN3-210ENST00000563874 RPAP2Q8IXW5 612 aaPredicted RBP16.24■□□□□ 0.19
CLN3-210ENST00000563874 RBM27Q9P2N5 1060 aaKnown RBP16.24■□□□□ 0.19
CLN3-210ENST00000563874 DLG5Q8TDM6 1919 aa16.24■□□□□ 0.19
CLN3-210ENST00000563874 EIF4A2Q14240 407 aaKnown RBP16.24■□□□□ 0.19
CLN3-210ENST00000563874 HSP90AA2PQ14568 343 aaPredicted RBP16.24■□□□□ 0.19
CLN3-210ENST00000563874 ZSCAN23Q3MJ62 389 aa16.24■□□□□ 0.19
CLN3-210ENST00000563874 CASC1Q6TDU7 716 aa16.24■□□□□ 0.19
CLN3-210ENST00000563874 RTL1A6NKG5 1358 aa16.24■□□□□ 0.19
CLN3-210ENST00000563874 F6X3S4 739 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 SLC4A2P04920 1241 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 RGS12O14924 1447 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 ST18O60284 1047 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 CYP2E1P05181 493 aaPredicted RBP16.23■□□□□ 0.19
CLN3-210ENST00000563874 FGD1P98174 961 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 CCDC61Q9Y6R9 512 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 METP08581 1390 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 AATKQ6ZMQ8 1374 aa16.23■□□□□ 0.19
CLN3-210ENST00000563874 PPP1R9BQ96SB3 815 aa16.22■□□□□ 0.19
CLN3-210ENST00000563874 CHL1O00533 1208 aa16.22■□□□□ 0.19
CLN3-210ENST00000563874 ZDHHC9Q9Y397 364 aa16.22■□□□□ 0.19
CLN3-210ENST00000563874 RICTORQ6R327 1708 aa16.22■□□□□ 0.19
CLN3-210ENST00000563874 KIF24Q5T7B8 1368 aa16.21■□□□□ 0.19
CLN3-210ENST00000563874 HSP90AB2PQ58FF8 381 aa16.21■□□□□ 0.19
CLN3-210ENST00000563874 G2E3Q7L622 706 aa16.21■□□□□ 0.19
CLN3-210ENST00000563874 RBSNQ9H1K0 784 aa16.21■□□□□ 0.19
CLN3-210ENST00000563874 PRIM1P49642 420 aaKnown RBP16.2■□□□□ 0.18
CLN3-210ENST00000563874 NOL8Q76FK4 1167 aaKnown RBP16.2■□□□□ 0.18
CLN3-210ENST00000563874 ZSCAN30Q86W11 494 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 GPT2Q8TD30 523 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 ZMYND15Q9H091 742 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 EXOC6BQ9Y2D4 811 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 FOXO3O43524 673 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 REC8O95072 547 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 ZNF445P59923 1031 aa16.2■□□□□ 0.18
CLN3-210ENST00000563874 A2ML1A8K2U0 1454 aa16.19■□□□□ 0.18
CLN3-210ENST00000563874 ERC2O15083 957 aa16.19■□□□□ 0.18
CLN3-210ENST00000563874 REREQ9P2R6 1566 aa16.19■□□□□ 0.18
CLN3-210ENST00000563874 NEK4P51957 841 aa16.19■□□□□ 0.18
CLN3-210ENST00000563874 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLN3-210ENST00000563874 IBTKQ9P2D0 1353 aaPredicted RBP16.19■□□□□ 0.18
CLN3-210ENST00000563874 MSNP26038 577 aaKnown RBP16.18■□□□□ 0.18
CLN3-210ENST00000563874 KIAA1211Q6ZU35 1233 aa16.18■□□□□ 0.18
CLN3-210ENST00000563874 NSFL1CQ9UNZ2 370 aaKnown RBP16.18■□□□□ 0.18
CLN3-210ENST00000563874 PRR36Q9H6K5 1346 aa16.18■□□□□ 0.18
CLN3-210ENST00000563874 CWC22Q9HCG8 908 aaKnown RBP16.18■□□□□ 0.18
CLN3-210ENST00000563874 PDE1AP54750 535 aa16.17■□□□□ 0.18
CLN3-210ENST00000563874 DLC1Q96QB1 1528 aa16.17■□□□□ 0.18
CLN3-210ENST00000563874 PTPRCP08575 1304 aa16.17■□□□□ 0.18
CLN3-210ENST00000563874 HAP1P54257 671 aaPredicted RBP16.16■□□□□ 0.18
CLN3-210ENST00000563874 FOXD4L6Q3SYB3 417 aaPredicted RBP16.16■□□□□ 0.18
CLN3-210ENST00000563874 FOXD4L3Q6VB84 417 aaPredicted RBP16.16■□□□□ 0.18
CLN3-210ENST00000563874 SYCE3A1L190 88 aa16.16■□□□□ 0.18
CLN3-210ENST00000563874 NECTIN2Q92692 538 aa16.16■□□□□ 0.18
CLN3-210ENST00000563874 RRP9O43818 475 aaKnown RBP16.15■□□□□ 0.18
CLN3-210ENST00000563874 HMMRO75330 724 aa16.15■□□□□ 0.18
CLN3-210ENST00000563874 TMEM63CQ9P1W3 806 aa16.15■□□□□ 0.18
CLN3-210ENST00000563874 TMX3Q96JJ7 454 aa16.15■□□□□ 0.18
CLN3-210ENST00000563874 TSPYL4Q9UJ04 414 aa16.15■□□□□ 0.18
CLN3-210ENST00000563874 PALD1Q9ULE6 856 aa16.15■□□□□ 0.18
CLN3-210ENST00000563874 RNF214Q8ND24 703 aa16.14■□□□□ 0.17
CLN3-210ENST00000563874 RILPL2Q969X0 211 aa16.14■□□□□ 0.17
CLN3-210ENST00000563874 KIAA0232Q92628 1395 aa16.13■□□□□ 0.17
CLN3-210ENST00000563874 TTC21BQ7Z4L5 1316 aa16.13■□□□□ 0.17
CLN3-210ENST00000563874 TRIM6-TRIM34B2RNG4 842 aa16.13■□□□□ 0.17
CLN3-210ENST00000563874 ANO2Q9NQ90 1003 aa16.13■□□□□ 0.17
CLN3-210ENST00000563874 MTHFSDQ2M296 383 aaKnown RBP16.12■□□□□ 0.17
CLN3-210ENST00000563874 ACEP12821 1306 aa16.12■□□□□ 0.17
CLN3-210ENST00000563874 GLIPR1L2Q4G1C9 344 aa16.12■□□□□ 0.17
CLN3-210ENST00000563874 VSIG10Q8N0Z9 540 aa16.12■□□□□ 0.17
CLN3-210ENST00000563874 RTF1Q92541 710 aaKnown RBP16.12■□□□□ 0.17
CLN3-210ENST00000563874 UPF3BQ9BZI7 483 aaKnown RBP16.12■□□□□ 0.17
CLN3-210ENST00000563874 PNMA6EA0A0J9YXQ4 647 aa16.11■□□□□ 0.17
CLN3-210ENST00000563874 XPCQ01831 940 aaPredicted RBP16.11■□□□□ 0.17
CLN3-210ENST00000563874 MAP3K19Q56UN5 1328 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 487.4 ms