RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 NBPF6Q5VWK0 638 aa23.57■■□□□ 1.36
HDGFL3-203ENST00000563404 NBPF4Q96M43 638 aa23.57■■□□□ 1.36
HDGFL3-203ENST00000563404 KCNQ4P56696 695 aa23.56■■□□□ 1.36
HDGFL3-203ENST00000563404 DOT1LQ8TEK3 1739 aa23.56■■□□□ 1.36
HDGFL3-203ENST00000563404 ZCRB1Q8TBF4 217 aaKnown RBP23.55■■□□□ 1.36
HDGFL3-203ENST00000563404 TRIM26Q12899 539 aaPredicted RBP23.54■■□□□ 1.36
HDGFL3-203ENST00000563404 SLC27A3Q5K4L6 730 aa23.54■■□□□ 1.36
HDGFL3-203ENST00000563404 USHBP1Q8N6Y0 703 aa23.54■■□□□ 1.36
HDGFL3-203ENST00000563404 SYTL4Q96C24 671 aaPredicted RBP23.54■■□□□ 1.36
HDGFL3-203ENST00000563404 ARXQ96QS3 562 aa23.53■■□□□ 1.36
HDGFL3-203ENST00000563404 PNPLA7Q6ZV29 1317 aa23.52■■□□□ 1.36
HDGFL3-203ENST00000563404 HSP90AB2PQ58FF8 381 aa23.5■■□□□ 1.35
HDGFL3-203ENST00000563404 LY75O60449 1722 aa23.5■■□□□ 1.35
HDGFL3-203ENST00000563404 QSER1Q2KHR3 1735 aa23.5■■□□□ 1.35
HDGFL3-203ENST00000563404 CARD14Q9BXL6 1004 aa23.49■■□□□ 1.35
HDGFL3-203ENST00000563404 TUBGCP6Q96RT7 1819 aa23.49■■□□□ 1.35
HDGFL3-203ENST00000563404 KIF20BQ96Q89 1820 aa23.48■■□□□ 1.35
HDGFL3-203ENST00000563404 INSRP06213 1382 aa23.48■■□□□ 1.35
HDGFL3-203ENST00000563404 MAP3K5Q99683 1374 aa23.48■■□□□ 1.35
HDGFL3-203ENST00000563404 CGNL1Q0VF96 1302 aa23.46■■□□□ 1.35
HDGFL3-203ENST00000563404 COL24A1Q17RW2 1714 aa23.46■■□□□ 1.35
HDGFL3-203ENST00000563404 SMG6Q86US8 1419 aaKnown RBP23.46■■□□□ 1.35
HDGFL3-203ENST00000563404 SLC16A10Q8TF71 515 aa23.46■■□□□ 1.35
HDGFL3-203ENST00000563404 TFCP2L1Q9NZI6 479 aa23.46■■□□□ 1.35
HDGFL3-203ENST00000563404 FLT4P35916 1363 aa23.45■■□□□ 1.34
HDGFL3-203ENST00000563404 RAPGEF4Q8WZA2 1011 aa23.45■■□□□ 1.34
HDGFL3-203ENST00000563404 TATP17735 454 aaPredicted RBP23.44■■□□□ 1.34
HDGFL3-203ENST00000563404 CDCA8Q53HL2 280 aa23.44■■□□□ 1.34
HDGFL3-203ENST00000563404 CCNL1Q9UK58 526 aaPredicted RBP23.44■■□□□ 1.34
HDGFL3-203ENST00000563404 NSD3Q9BZ95 1437 aa23.43■■□□□ 1.34
HDGFL3-203ENST00000563404 EMILIN1Q9Y6C2 1016 aa23.43■■□□□ 1.34
HDGFL3-203ENST00000563404 KIF24Q5T7B8 1368 aa23.42■■□□□ 1.34
HDGFL3-203ENST00000563404 ZNF784Q8NCA9 323 aaPredicted RBP23.41■■□□□ 1.34
HDGFL3-203ENST00000563404 CYP27B1O15528 508 aa23.4■■□□□ 1.34
HDGFL3-203ENST00000563404 PCDH11XQ9BZA7 1347 aa23.39■■□□□ 1.34
HDGFL3-203ENST00000563404 PCDH11YQ9BZA8 1340 aa23.39■■□□□ 1.34
HDGFL3-203ENST00000563404 POLD1P28340 1107 aa23.39■■□□□ 1.33
HDGFL3-203ENST00000563404 COL23A1Q86Y22 540 aaPredicted RBP23.38■■□□□ 1.33
HDGFL3-203ENST00000563404 NCAPD2Q15021 1401 aa23.37■■□□□ 1.33
HDGFL3-203ENST00000563404 KLHL34Q8N239 644 aa23.37■■□□□ 1.33
HDGFL3-203ENST00000563404 GOLGB1Q14789 3259 aaKnown RBP23.37■■□□□ 1.33
HDGFL3-203ENST00000563404 TOGARAM1Q9Y4F4 1720 aa23.36■■□□□ 1.33
HDGFL3-203ENST00000563404 NLGN2Q8NFZ4 835 aa23.36■■□□□ 1.33
HDGFL3-203ENST00000563404 CHD4Q14839 1912 aa23.35■■□□□ 1.33
HDGFL3-203ENST00000563404 PKD1L3Q7Z443 1732 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 ANKRD26Q9UPS8 1709 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 GPR162Q16538 588 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 MPRIPQ6WCQ1 1025 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 TIMELESSQ9UNS1 1208 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 PALLDQ8WX93 1383 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 C5P01031 1676 aa23.34■■□□□ 1.33
HDGFL3-203ENST00000563404 PPM1GO15355 546 aaPredicted RBP23.33■■□□□ 1.33
HDGFL3-203ENST00000563404 MSH5O43196 834 aa23.33■■□□□ 1.33
HDGFL3-203ENST00000563404 WASHC2AQ641Q2 1341 aa23.33■■□□□ 1.32
HDGFL3-203ENST00000563404 MSL1Q68DK7 614 aa23.31■■□□□ 1.32
HDGFL3-203ENST00000563404 ITGB4P16144 1822 aa23.31■■□□□ 1.32
HDGFL3-203ENST00000563404 NKX1-1Q15270 411 aaPredicted RBP23.3■■□□□ 1.32
HDGFL3-203ENST00000563404 EYA1Q99502 592 aa23.3■■□□□ 1.32
HDGFL3-203ENST00000563404 TAF1LQ8IZX4 1826 aa23.3■■□□□ 1.32
HDGFL3-203ENST00000563404 AMIGO3Q86WK7 504 aa23.29■■□□□ 1.32
HDGFL3-203ENST00000563404 PIGBQ92521 554 aa23.29■■□□□ 1.32
HDGFL3-203ENST00000563404 POLKQ9UBT6 870 aa23.29■■□□□ 1.32
HDGFL3-203ENST00000563404 PELP1Q8IZL8 1130 aaKnown RBP23.28■■□□□ 1.32
HDGFL3-203ENST00000563404 MAP2P11137 1827 aaKnown RBP23.28■■□□□ 1.32
HDGFL3-203ENST00000563404 C4BP0C0L5 1744 aa23.26■■□□□ 1.31
HDGFL3-203ENST00000563404 PCGF6Q9BYE7 350 aa23.26■■□□□ 1.31
HDGFL3-203ENST00000563404 SPG7Q9UQ90 795 aa23.26■■□□□ 1.31
HDGFL3-203ENST00000563404 YBX3P16989 372 aaKnown RBP eCLIP23.25■■□□□ 1.31
HDGFL3-203ENST00000563404 SMIM5Q71RC9 77 aa23.25■■□□□ 1.31
HDGFL3-203ENST00000563404 SMARCC1Q92922 1105 aaPredicted RBP23.25■■□□□ 1.31
HDGFL3-203ENST00000563404 POLR3GLQ9BT43 218 aa23.25■■□□□ 1.31
HDGFL3-203ENST00000563404 CLSPNQ9HAW4 1339 aa23.25■■□□□ 1.31
HDGFL3-203ENST00000563404 TNNT2P45379 298 aaPredicted RBP23.23■■□□□ 1.31
HDGFL3-203ENST00000563404 EIF4A2Q14240 407 aaKnown RBP23.23■■□□□ 1.31
HDGFL3-203ENST00000563404 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.23■■□□□ 1.31
HDGFL3-203ENST00000563404 FLAD1Q8NFF5 587 aa23.22■■□□□ 1.31
HDGFL3-203ENST00000563404 PHKG2P15735 406 aa23.21■■□□□ 1.31
HDGFL3-203ENST00000563404 LINC00116Q8NCU8 138 aa23.21■■□□□ 1.31
HDGFL3-203ENST00000563404 AK7Q96M32 723 aa23.21■■□□□ 1.31
HDGFL3-203ENST00000563404 UBR3Q6ZT12 1888 aa23.2■■□□□ 1.3
HDGFL3-203ENST00000563404 LOC102724428A0A0B4J2F2 783 aa23.2■■□□□ 1.3
HDGFL3-203ENST00000563404 SIK1P57059 783 aa23.2■■□□□ 1.3
HDGFL3-203ENST00000563404 ASAP1Q9ULH1 1129 aa23.2■■□□□ 1.3
HDGFL3-203ENST00000563404 HSPA5P11021 654 aaKnown RBP23.19■■□□□ 1.3
HDGFL3-203ENST00000563404 HMGB2P26583 209 aaKnown RBP23.19■■□□□ 1.3
HDGFL3-203ENST00000563404 IFNL2Q8IZJ0 200 aa23.19■■□□□ 1.3
HDGFL3-203ENST00000563404 PHF14O94880 888 aa23.18■■□□□ 1.3
HDGFL3-203ENST00000563404 ITPK1Q13572 414 aa23.18■■□□□ 1.3
HDGFL3-203ENST00000563404 TMOD3Q9NYL9 352 aa23.18■■□□□ 1.3
HDGFL3-203ENST00000563404 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.17■■□□□ 1.3
HDGFL3-203ENST00000563404 C1QTNF8P60827 252 aa23.17■■□□□ 1.3
HDGFL3-203ENST00000563404 PANK3Q9H999 370 aa23.17■■□□□ 1.3
HDGFL3-203ENST00000563404 CD2APQ9Y5K6 639 aa23.17■■□□□ 1.3
HDGFL3-203ENST00000563404 IGSF1Q8N6C5 1336 aa23.16■■□□□ 1.3
HDGFL3-203ENST00000563404 ATG3Q9NT62 314 aa23.16■■□□□ 1.3
HDGFL3-203ENST00000563404 GRIN3BO60391 1043 aa23.15■■□□□ 1.3
HDGFL3-203ENST00000563404 EIF4G2P78344 907 aaKnown RBP eCLIP23.15■■□□□ 1.3
HDGFL3-203ENST00000563404 SSFA2P28290 1259 aa23.14■■□□□ 1.29
HDGFL3-203ENST00000563404 ATP6V1AP38606 617 aa23.13■■□□□ 1.29
HDGFL3-203ENST00000563404 PLEKHG2Q9H7P9 1386 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms