RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 CHL1O00533 1208 aa12.06□□□□□ -0.48
LINC00838-201ENST00000562956 TWISTNBQ3B726 338 aaPredicted RBP12.06□□□□□ -0.48
LINC00838-201ENST00000562956 ATF7IPQ6VMQ6 1270 aa12.06□□□□□ -0.48
LINC00838-201ENST00000562956 FTSJ3Q8IY81 847 aaKnown RBP12.06□□□□□ -0.48
LINC00838-201ENST00000562956 ZNF428Q96B54 188 aa12.06□□□□□ -0.48
LINC00838-201ENST00000562956 DEKP35659 375 aaKnown RBP12.05□□□□□ -0.48
LINC00838-201ENST00000562956 MVPQ14764 893 aaKnown RBP12.05□□□□□ -0.48
LINC00838-201ENST00000562956 RTF1Q92541 710 aaKnown RBP12.05□□□□□ -0.48
LINC00838-201ENST00000562956 KIF16BQ96L93 1317 aa12.05□□□□□ -0.48
LINC00838-201ENST00000562956 IGHDP01880 384 aa12.04□□□□□ -0.48
LINC00838-201ENST00000562956 LRRC59Q96AG4 307 aaKnown RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 TCERG1O14776 1098 aaKnown RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 BRPF1P55201 1214 aaPredicted RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 KRT24Q2M2I5 525 aa12.04□□□□□ -0.48
LINC00838-201ENST00000562956 ANO8Q9HCE9 1232 aaPredicted RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 AXIN2Q9Y2T1 843 aa12.04□□□□□ -0.48
LINC00838-201ENST00000562956 PHRF1Q9P1Y6 1649 aaKnown RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 MRPL50Q8N5N7 158 aaKnown RBP12.04□□□□□ -0.48
LINC00838-201ENST00000562956 MIS18AQ9NYP9 233 aa12.04□□□□□ -0.48
LINC00838-201ENST00000562956 NPHP3Q7Z494 1330 aa12.03□□□□□ -0.48
LINC00838-201ENST00000562956 MS4A1P11836 297 aa12.03□□□□□ -0.48
LINC00838-201ENST00000562956 NBR1Q14596 966 aa12.03□□□□□ -0.48
LINC00838-201ENST00000562956 ALS2Q96Q42 1657 aa12.03□□□□□ -0.48
LINC00838-201ENST00000562956 IPO8O15397 1037 aaKnown RBP12.03□□□□□ -0.48
LINC00838-201ENST00000562956 PCDHB15Q9Y5E8 787 aa12.03□□□□□ -0.48
LINC00838-201ENST00000562956 MED1Q15648 1581 aaPredicted RBP12.03□□□□□ -0.48
LINC00838-201ENST00000562956 XIRP1Q702N8 1843 aaKnown RBP12.02□□□□□ -0.48
LINC00838-201ENST00000562956 GNAT3A8MTJ3 354 aa12.02□□□□□ -0.48
LINC00838-201ENST00000562956 ZC3H6P61129 1189 aaKnown RBP12.02□□□□□ -0.48
LINC00838-201ENST00000562956 AAMPQ13685 434 aa12.02□□□□□ -0.48
LINC00838-201ENST00000562956 HTATSF1O43719 755 aaKnown RBP12.02□□□□□ -0.49
LINC00838-201ENST00000562956 BRINP3Q76B58 766 aa12.02□□□□□ -0.49
LINC00838-201ENST00000562956 TMEM57Q8N5G2 664 aa12.02□□□□□ -0.49
LINC00838-201ENST00000562956 ANKRD24Q8TF21 1146 aa12.02□□□□□ -0.49
LINC00838-201ENST00000562956 ITPRIPQ8IWB1 547 aa12.01□□□□□ -0.49
LINC00838-201ENST00000562956 CABLES1Q8TDN4 633 aa12.01□□□□□ -0.49
LINC00838-201ENST00000562956 MAP3K5Q99683 1374 aa12.01□□□□□ -0.49
LINC00838-201ENST00000562956 PXDNQ92626 1479 aa12.01□□□□□ -0.49
LINC00838-201ENST00000562956 IL17REQ8NFR9 667 aa12□□□□□ -0.49
LINC00838-201ENST00000562956 TNS3Q68CZ2 1445 aa12□□□□□ -0.49
LINC00838-201ENST00000562956 TSPYL4Q9UJ04 414 aa12□□□□□ -0.49
LINC00838-201ENST00000562956 KIAA0232Q92628 1395 aa12□□□□□ -0.49
LINC00838-201ENST00000562956 SLAIN2Q9P270 581 aa12□□□□□ -0.49
LINC00838-201ENST00000562956 SPATA31A3Q5VYP0 1347 aa11.99□□□□□ -0.49
LINC00838-201ENST00000562956 ARHGAP45Q92619 1136 aa11.99□□□□□ -0.49
LINC00838-201ENST00000562956 DDX19BQ9UMR2 479 aa11.99□□□□□ -0.49
LINC00838-201ENST00000562956 NCAPD2Q15021 1401 aa11.98□□□□□ -0.49
LINC00838-201ENST00000562956 ERBB3P21860 1342 aa11.98□□□□□ -0.49
LINC00838-201ENST00000562956 LRRC37A3O60309 1634 aa11.97□□□□□ -0.49
LINC00838-201ENST00000562956 RGPD2P0DJD1 1756 aa11.97□□□□□ -0.49
LINC00838-201ENST00000562956 ZBTB40Q9NUA8 1239 aa11.97□□□□□ -0.49
LINC00838-201ENST00000562956 HAP1P54257 671 aaPredicted RBP11.96□□□□□ -0.49
LINC00838-201ENST00000562956 ABCC4O15439 1325 aa11.96□□□□□ -0.5
LINC00838-201ENST00000562956 TAF7Q15545 349 aaPredicted RBP11.96□□□□□ -0.5
LINC00838-201ENST00000562956 LGR6Q9HBX8 967 aa11.96□□□□□ -0.5
LINC00838-201ENST00000562956 PDE4AP27815 886 aa11.95□□□□□ -0.5
LINC00838-201ENST00000562956 RGS3P49796 1198 aa11.95□□□□□ -0.5
LINC00838-201ENST00000562956 CHRNA2Q15822 529 aa11.95□□□□□ -0.5
LINC00838-201ENST00000562956 PLEKHO1Q53GL0 409 aaPredicted RBP11.95□□□□□ -0.5
LINC00838-201ENST00000562956 ZNF530Q6P9A1 599 aaPredicted RBP11.95□□□□□ -0.5
LINC00838-201ENST00000562956 CEMIPQ8WUJ3 1361 aa11.95□□□□□ -0.5
LINC00838-201ENST00000562956 RWDD1Q9H446 243 aaPredicted RBP11.95□□□□□ -0.5
LINC00838-201ENST00000562956 AMOTQ4VCS5 1084 aa11.94□□□□□ -0.5
LINC00838-201ENST00000562956 AKAP4Q5JQC9 854 aa11.94□□□□□ -0.5
LINC00838-201ENST00000562956 API5Q9BZZ5 524 aaKnown RBP11.94□□□□□ -0.5
LINC00838-201ENST00000562956 SOS2Q07890 1332 aaPredicted RBP11.94□□□□□ -0.5
LINC00838-201ENST00000562956 ZBTB7BO15156 539 aaPredicted RBP11.94□□□□□ -0.5
LINC00838-201ENST00000562956 CAMTA1Q9Y6Y1 1673 aa11.94□□□□□ -0.5
LINC00838-201ENST00000562956 SLC4A2P04920 1241 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 BACH2Q9BYV9 841 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 NLRP2Q9NX02 1062 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 MPRIPQ6WCQ1 1025 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 BABAM1Q9NWV8 329 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 RGS12O14924 1447 aa11.93□□□□□ -0.5
LINC00838-201ENST00000562956 RTN4Q9NQC3 1192 aaKnown RBP11.93□□□□□ -0.5
LINC00838-201ENST00000562956 CPDO75976 1380 aa11.92□□□□□ -0.5
LINC00838-201ENST00000562956 RGPD5Q99666 1765 aa11.92□□□□□ -0.5
LINC00838-201ENST00000562956 HDAC1Q13547 482 aaPredicted RBP11.92□□□□□ -0.5
LINC00838-201ENST00000562956 LMO7Q8WWI1 1683 aa11.92□□□□□ -0.5
LINC00838-201ENST00000562956 CRYBG1Q9Y4K1 1723 aa11.92□□□□□ -0.5
LINC00838-201ENST00000562956 COL18A1P39060 1754 aa11.92□□□□□ -0.5
LINC00838-201ENST00000562956 CSB-PGBD3P0DP91 1061 aa11.91□□□□□ -0.5
LINC00838-201ENST00000562956 C1orf141Q5JVX7 400 aa11.91□□□□□ -0.5
LINC00838-201ENST00000562956 G2E3Q7L622 706 aa11.91□□□□□ -0.5
LINC00838-201ENST00000562956 PTPRCP08575 1304 aa11.91□□□□□ -0.5
LINC00838-201ENST00000562956 RNMTO43148 476 aaKnown RBP11.9□□□□□ -0.5
LINC00838-201ENST00000562956 NECTIN2Q92692 538 aa11.9□□□□□ -0.5
LINC00838-201ENST00000562956 C1orf115Q9H7X2 142 aa11.9□□□□□ -0.5
LINC00838-201ENST00000562956 PDZRN3Q9UPQ7 1066 aa11.9□□□□□ -0.5
LINC00838-201ENST00000562956 RAPGEF4Q8WZA2 1011 aa11.9□□□□□ -0.5
LINC00838-201ENST00000562956 TEFQ10587 303 aa11.9□□□□□ -0.51
LINC00838-201ENST00000562956 INTS3Q68E01 1043 aaKnown RBP11.9□□□□□ -0.51
LINC00838-201ENST00000562956 KCNQ3O43525 872 aa11.89□□□□□ -0.51
LINC00838-201ENST00000562956 ABCC6O95255 1503 aa11.89□□□□□ -0.51
LINC00838-201ENST00000562956 EIF4A1P60842 406 aaKnown RBP11.89□□□□□ -0.51
LINC00838-201ENST00000562956 CCDC30Q5VVM6 783 aa11.89□□□□□ -0.51
LINC00838-201ENST00000562956 STK31Q9BXU1 1019 aa11.89□□□□□ -0.51
LINC00838-201ENST00000562956 CHMP4BQ9H444 224 aaKnown RBP11.89□□□□□ -0.51
LINC00838-201ENST00000562956 MEGF6O75095 1541 aa11.88□□□□□ -0.51
LINC00838-201ENST00000562956 BTBD11A6QL63 1104 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms