RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, human

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHF-208	ENST00000560734	TSPYL6	Q8N831	410 aa		31.98	■■■□□ 2.71
SHF-208	ENST00000560734	RWDD1	Q9H446	243 aa	Predicted RBP	31.98	■■■□□ 2.71
SHF-208	ENST00000560734	C8orf58	Q8NAV2	365 aa		31.97	■■■□□ 2.71
SHF-208	ENST00000560734	BACH2	Q9BYV9	841 aa		31.97	■■■□□ 2.71
SHF-208	ENST00000560734	PDE4A	P27815	886 aa		31.97	■■■□□ 2.71
SHF-208	ENST00000560734	CADPS2	Q86UW7	1296 aa		31.97	■■■□□ 2.71
SHF-208	ENST00000560734	LRRC37A3	O60309	1634 aa		31.97	■■■□□ 2.71
SHF-208	ENST00000560734	ARHGEF25	Q86VW2	580 aa		31.96	■■■□□ 2.71
SHF-208	ENST00000560734	BABAM1	Q9NWV8	329 aa		31.96	■■■□□ 2.71
SHF-208	ENST00000560734	PCDHB15	Q9Y5E8	787 aa		31.96	■■■□□ 2.71
SHF-208	ENST00000560734	GC	P02774	474 aa		31.95	■■■□□ 2.71
SHF-208	ENST00000560734	MCM10	Q7L590	875 aa		31.95	■■■□□ 2.71
SHF-208	ENST00000560734	ILDR1	Q86SU0	546 aa	Predicted RBP	31.95	■■■□□ 2.71
SHF-208	ENST00000560734	ALS2	Q96Q42	1657 aa		31.95	■■■□□ 2.7
SHF-208	ENST00000560734	NCAPD2	Q15021	1401 aa		31.94	■■■□□ 2.7
SHF-208	ENST00000560734	MSH5	O43196	834 aa		31.92	■■■□□ 2.7
SHF-208	ENST00000560734	GNAT3	A8MTJ3	354 aa		31.92	■■■□□ 2.7
SHF-208	ENST00000560734	ITPRIP	Q8IWB1	547 aa		31.92	■■■□□ 2.7
SHF-208	ENST00000560734	TMEM57	Q8N5G2	664 aa		31.92	■■■□□ 2.7
SHF-208	ENST00000560734	API5	Q9BZZ5	524 aa	Known RBP	31.91	■■■□□ 2.7
SHF-208	ENST00000560734	SOS1	Q07889	1333 aa	Predicted RBP	31.91	■■■□□ 2.7
SHF-208	ENST00000560734	HDAC1	Q13547	482 aa	Predicted RBP	31.9	■■■□□ 2.7
SHF-208	ENST00000560734	ZBTB40	Q9NUA8	1239 aa		31.9	■■■□□ 2.7
SHF-208	ENST00000560734	MAP3K5	Q99683	1374 aa		31.9	■■■□□ 2.7
SHF-208	ENST00000560734	MSH6	P52701	1360 aa		31.89	■■■□□ 2.7
SHF-208	ENST00000560734	ABCC4	O15439	1325 aa		31.88	■■■□□ 2.69
SHF-208	ENST00000560734	LTV1	Q96GA3	475 aa	Predicted RBP	31.86	■■■□□ 2.69
SHF-208	ENST00000560734	NPHP3	Q7Z494	1330 aa		31.86	■■■□□ 2.69
SHF-208	ENST00000560734	CAMTA1	Q9Y6Y1	1673 aa		31.86	■■■□□ 2.69
SHF-208	ENST00000560734	ELL2	O00472	640 aa	Predicted RBP	31.84	■■■□□ 2.69
SHF-208	ENST00000560734	NBPF6	Q5VWK0	638 aa		31.84	■■■□□ 2.69
SHF-208	ENST00000560734	NBPF4	Q96M43	638 aa		31.84	■■■□□ 2.69
SHF-208	ENST00000560734	ABCC6	O95255	1503 aa		31.83	■■■□□ 2.69
SHF-208	ENST00000560734	XPC	Q01831	940 aa	Predicted RBP	31.83	■■■□□ 2.69
SHF-208	ENST00000560734	TSPYL4	Q9UJ04	414 aa		31.83	■■■□□ 2.69
SHF-208	ENST00000560734	PTPRC	P08575	1304 aa		31.81	■■■□□ 2.68
SHF-208	ENST00000560734	FAM161A	Q3B820	660 aa		31.81	■■■□□ 2.68
SHF-208	ENST00000560734	AMOT	Q4VCS5	1084 aa		31.8	■■■□□ 2.68
SHF-208	ENST00000560734	MED1	Q15648	1581 aa	Predicted RBP	31.8	■■■□□ 2.68
SHF-208	ENST00000560734	XIRP1	Q702N8	1843 aa	Known RBP	31.79	■■■□□ 2.68
SHF-208	ENST00000560734	ZBTB7B	O15156	539 aa	Predicted RBP	31.79	■■■□□ 2.68
SHF-208	ENST00000560734	ANP32A	P39687	249 aa	Known RBP	31.79	■■■□□ 2.68
SHF-208	ENST00000560734	CEMIP	Q8WUJ3	1361 aa		31.79	■■■□□ 2.68
SHF-208	ENST00000560734	SKAP1	Q86WV1	359 aa		31.78	■■■□□ 2.68
SHF-208	ENST00000560734	PLEKHG2	Q9H7P9	1386 aa		31.77	■■■□□ 2.68
SHF-208	ENST00000560734	TNS3	Q68CZ2	1445 aa		31.77	■■■□□ 2.68
SHF-208	ENST00000560734	TAF7	Q15545	349 aa	Predicted RBP	31.77	■■■□□ 2.68
SHF-208	ENST00000560734	LMOD2	Q6P5Q4	547 aa		31.77	■■■□□ 2.68
SHF-208	ENST00000560734	IL17RE	Q8NFR9	667 aa		31.77	■■■□□ 2.68
SHF-208	ENST00000560734	PXDN	Q92626	1479 aa		31.77	■■■□□ 2.68
SHF-208	ENST00000560734	OVOS2	A0A0G2JMS6	1433 aa		31.76	■■■□□ 2.67
SHF-208	ENST00000560734	LMO7	Q8WWI1	1683 aa		31.75	■■■□□ 2.67
SHF-208	ENST00000560734	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.75	■■■□□ 2.67
SHF-208	ENST00000560734	ANKRD24	Q8TF21	1146 aa		31.75	■■■□□ 2.67
SHF-208	ENST00000560734	RGS3	P49796	1198 aa		31.75	■■■□□ 2.67
SHF-208	ENST00000560734	INTS3	Q68E01	1043 aa	Known RBP	31.75	■■■□□ 2.67
SHF-208	ENST00000560734	SMC5	Q8IY18	1101 aa		31.75	■■■□□ 2.67
SHF-208	ENST00000560734	ERICH6	Q7L0X2	663 aa		31.74	■■■□□ 2.67
SHF-208	ENST00000560734	USHBP1	Q8N6Y0	703 aa		31.73	■■■□□ 2.67
SHF-208	ENST00000560734	RGPD2	P0DJD1	1756 aa		31.72	■■■□□ 2.67
SHF-208	ENST00000560734	AKAP4	Q5JQC9	854 aa		31.72	■■■□□ 2.67
SHF-208	ENST00000560734	CERK	Q8TCT0	537 aa		31.72	■■■□□ 2.67
SHF-208	ENST00000560734	FBXO41	Q8TF61	875 aa		31.72	■■■□□ 2.67
SHF-208	ENST00000560734	PDZRN3	Q9UPQ7	1066 aa		31.72	■■■□□ 2.67
SHF-208	ENST00000560734	KRT24	Q2M2I5	525 aa		31.71	■■■□□ 2.67
SHF-208	ENST00000560734	C8orf34	Q49A92	452 aa		31.71	■■■□□ 2.67
SHF-208	ENST00000560734	SPATA31A3	Q5VYP0	1347 aa		31.71	■■■□□ 2.67
SHF-208	ENST00000560734	RGS12	O14924	1447 aa		31.7	■■■□□ 2.67
SHF-208	ENST00000560734	CHMP4A	Q9BY43	222 aa		31.7	■■■□□ 2.67
SHF-208	ENST00000560734	LTBP4	Q8N2S1	1624 aa		31.69	■■■□□ 2.66
SHF-208	ENST00000560734	ZBTB7C	A1YPR0	619 aa		31.69	■■■□□ 2.66
SHF-208	ENST00000560734	MIS18A	Q9NYP9	233 aa		31.69	■■■□□ 2.66
SHF-208	ENST00000560734	LRRC59	Q96AG4	307 aa	Known RBP	31.68	■■■□□ 2.66
SHF-208	ENST00000560734	IPO9	Q96P70	1041 aa	Known RBP	31.68	■■■□□ 2.66
SHF-208	ENST00000560734	ERBB3	P21860	1342 aa		31.68	■■■□□ 2.66
SHF-208	ENST00000560734	CRYBG1	Q9Y4K1	1723 aa		31.68	■■■□□ 2.66
SHF-208	ENST00000560734	CPD	O75976	1380 aa		31.66	■■■□□ 2.66
SHF-208	ENST00000560734	AXIN2	Q9Y2T1	843 aa		31.66	■■■□□ 2.66
SHF-208	ENST00000560734	COL18A1	P39060	1754 aa		31.66	■■■□□ 2.66
SHF-208	ENST00000560734	FAM208A	Q9UK61	1670 aa	Known RBP	31.66	■■■□□ 2.66
SHF-208	ENST00000560734	CACNA1F	O60840	1977 aa		31.65	■■■□□ 2.66
SHF-208	ENST00000560734	CCDC30	Q5VVM6	783 aa		31.65	■■■□□ 2.66
SHF-208	ENST00000560734	SLC4A2	P04920	1241 aa		31.64	■■■□□ 2.66
SHF-208	ENST00000560734	HOXB7	P09629	217 aa		31.64	■■■□□ 2.66
SHF-208	ENST00000560734	STK31	Q9BXU1	1019 aa		31.63	■■■□□ 2.65
SHF-208	ENST00000560734	VIRMA	Q69YN4	1812 aa	Known RBP	31.63	■■■□□ 2.65
SHF-208	ENST00000560734	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.63	■■■□□ 2.65
SHF-208	ENST00000560734	BRINP3	Q76B58	766 aa		31.63	■■■□□ 2.65
SHF-208	ENST00000560734	GCC1	Q96CN9	775 aa		31.63	■■■□□ 2.65
SHF-208	ENST00000560734	NOP58	Q9Y2X3	529 aa	Known RBP	31.63	■■■□□ 2.65
SHF-208	ENST00000560734	KDM3B	Q7LBC6	1761 aa		31.61	■■■□□ 2.65
SHF-208	ENST00000560734	ADAMTS7	Q9UKP4	1686 aa		31.6	■■■□□ 2.65
SHF-208	ENST00000560734	C1orf141	Q5JVX7	400 aa		31.6	■■■□□ 2.65
SHF-208	ENST00000560734	RGPD5	Q99666	1765 aa		31.6	■■■□□ 2.65
SHF-208	ENST00000560734	ZC3H6	P61129	1189 aa	Known RBP	31.59	■■■□□ 2.65
SHF-208	ENST00000560734	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.59	■■■□□ 2.65
SHF-208	ENST00000560734	SOS2	Q07890	1332 aa	Predicted RBP	31.59	■■■□□ 2.65
SHF-208	ENST00000560734	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.59	■■■□□ 2.65
SHF-208	ENST00000560734	SLAIN2	Q9P270	581 aa		31.58	■■■□□ 2.65
SHF-208	ENST00000560734	NUCB1	Q02818	461 aa		31.58	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms