RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SHANK3Q9BYB0 1731 aa25.31■■□□□ 1.64
TSPAN3-208ENST00000560514 SIN3AQ96ST3 1273 aa25.3■■□□□ 1.64
TSPAN3-208ENST00000560514 CCNL1Q9UK58 526 aaPredicted RBP25.3■■□□□ 1.64
TSPAN3-208ENST00000560514 DOT1LQ8TEK3 1739 aa25.29■■□□□ 1.64
TSPAN3-208ENST00000560514 CD163L1Q9NR16 1453 aa25.29■■□□□ 1.64
TSPAN3-208ENST00000560514 SLC12A5Q9H2X9 1139 aa25.29■■□□□ 1.64
TSPAN3-208ENST00000560514 LY75O60449 1722 aa25.29■■□□□ 1.64
TSPAN3-208ENST00000560514 YBX3P16989 372 aaKnown RBP eCLIP25.27■■□□□ 1.642e-12■■■□□ 18.9
TSPAN3-208ENST00000560514 ZCRB1Q8TBF4 217 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-208ENST00000560514 CARD11Q9BXL7 1154 aa25.26■■□□□ 1.63
TSPAN3-208ENST00000560514 USP47Q96K76 1375 aa25.26■■□□□ 1.63
TSPAN3-208ENST00000560514 HMGB2P26583 209 aaKnown RBP25.24■■□□□ 1.63
TSPAN3-208ENST00000560514 AMPHP49418 695 aa25.24■■□□□ 1.63
TSPAN3-208ENST00000560514 A0A1W2PP64 1363 aa25.23■■□□□ 1.63
TSPAN3-208ENST00000560514 COL23A1Q86Y22 540 aaPredicted RBP25.23■■□□□ 1.63
TSPAN3-208ENST00000560514 MSL1Q68DK7 614 aa25.22■■□□□ 1.63
TSPAN3-208ENST00000560514 COG3Q96JB2 828 aa25.22■■□□□ 1.63
TSPAN3-208ENST00000560514 GPBP1L1Q9HC44 474 aaPredicted RBP25.22■■□□□ 1.63
TSPAN3-208ENST00000560514 ATP10DQ9P241 1426 aa25.21■■□□□ 1.63
TSPAN3-208ENST00000560514 NSD2O96028 1365 aa25.21■■□□□ 1.63
TSPAN3-208ENST00000560514 CEP350Q5VT06 3117 aa25.21■■□□□ 1.63
TSPAN3-208ENST00000560514 HOXC9P31274 260 aa25.2■■□□□ 1.62
TSPAN3-208ENST00000560514 MAP3K19Q56UN5 1328 aa25.18■■□□□ 1.62
TSPAN3-208ENST00000560514 CD2APQ9Y5K6 639 aa25.18■■□□□ 1.62
TSPAN3-208ENST00000560514 RGPD2P0DJD1 1756 aa25.18■■□□□ 1.62
TSPAN3-208ENST00000560514 FLAD1Q8NFF5 587 aa25.17■■□□□ 1.62
TSPAN3-208ENST00000560514 PUS7Q96PZ0 661 aaKnown RBP25.16■■□□□ 1.62
TSPAN3-208ENST00000560514 MEGF6O75095 1541 aa25.16■■□□□ 1.62
TSPAN3-208ENST00000560514 CGNL1Q0VF96 1302 aa25.15■■□□□ 1.62
TSPAN3-208ENST00000560514 RAPGEF4Q8WZA2 1011 aa25.15■■□□□ 1.62
TSPAN3-208ENST00000560514 C5P01031 1676 aa25.14■■□□□ 1.62
TSPAN3-208ENST00000560514 ZNF526Q8TF50 670 aaPredicted RBP25.14■■□□□ 1.62
TSPAN3-208ENST00000560514 SMG6Q86US8 1419 aaKnown RBP25.12■■□□□ 1.61
TSPAN3-208ENST00000560514 HSPA6P17066 643 aa25.11■■□□□ 1.61
TSPAN3-208ENST00000560514 RTL1A6NKG5 1358 aa25.1■■□□□ 1.61
TSPAN3-208ENST00000560514 TATP17735 454 aaPredicted RBP25.1■■□□□ 1.61
TSPAN3-208ENST00000560514 FBLN1P23142 703 aa25.1■■□□□ 1.61
TSPAN3-208ENST00000560514 NBPF6Q5VWK0 638 aa25.09■■□□□ 1.61
TSPAN3-208ENST00000560514 USHBP1Q8N6Y0 703 aa25.09■■□□□ 1.61
TSPAN3-208ENST00000560514 AK7Q96M32 723 aa25.09■■□□□ 1.61
TSPAN3-208ENST00000560514 NBPF4Q96M43 638 aa25.09■■□□□ 1.61
TSPAN3-208ENST00000560514 PALLDQ8WX93 1383 aa25.08■■□□□ 1.61
TSPAN3-208ENST00000560514 MPRIPQ6WCQ1 1025 aa25.08■■□□□ 1.61
TSPAN3-208ENST00000560514 PCDH11XQ9BZA7 1347 aa25.08■■□□□ 1.6
TSPAN3-208ENST00000560514 PCDH11YQ9BZA8 1340 aa25.08■■□□□ 1.6
TSPAN3-208ENST00000560514 TAF1LQ8IZX4 1826 aa25.07■■□□□ 1.6
TSPAN3-208ENST00000560514 RRS1Q15050 365 aaKnown RBP25.06■■□□□ 1.6
TSPAN3-208ENST00000560514 SLC24A1O60721 1099 aa25.05■■□□□ 1.6
TSPAN3-208ENST00000560514 SMARCC1Q92922 1105 aaPredicted RBP25.05■■□□□ 1.6
TSPAN3-208ENST00000560514 ADCY9O60503 1353 aa25.05■■□□□ 1.6
TSPAN3-208ENST00000560514 IGSF1Q8N6C5 1336 aa25.04■■□□□ 1.6
TSPAN3-208ENST00000560514 PHF14O94880 888 aa25.03■■□□□ 1.6
TSPAN3-208ENST00000560514 WWC3Q9ULE0 1092 aa25.03■■□□□ 1.6
TSPAN3-208ENST00000560514 C4BP0C0L5 1744 aa25.03■■□□□ 1.6
TSPAN3-208ENST00000560514 NSD3Q9BZ95 1437 aa25.03■■□□□ 1.6
TSPAN3-208ENST00000560514 TONSLQ96HA7 1378 aa25■■□□□ 1.59
TSPAN3-208ENST00000560514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.99■■□□□ 1.59
TSPAN3-208ENST00000560514 GGNBP2Q9H3C7 697 aa24.99■■□□□ 1.59
TSPAN3-208ENST00000560514 ITGB4P16144 1822 aa24.98■■□□□ 1.59
TSPAN3-208ENST00000560514 ST20-MTHFSA0A0A6YYL1 179 aa24.97■■□□□ 1.59
TSPAN3-208ENST00000560514 UBR3Q6ZT12 1888 aa24.97■■□□□ 1.59
TSPAN3-208ENST00000560514 INSRP06213 1382 aa24.96■■□□□ 1.59
TSPAN3-208ENST00000560514 FYB1O15117 783 aa24.96■■□□□ 1.59
TSPAN3-208ENST00000560514 HSP90AB2PQ58FF8 381 aa24.96■■□□□ 1.59
TSPAN3-208ENST00000560514 TESK2Q96S53 571 aa24.96■■□□□ 1.59
TSPAN3-208ENST00000560514 SSFA2P28290 1259 aa24.95■■□□□ 1.58
TSPAN3-208ENST00000560514 FLT4P35916 1363 aa24.94■■□□□ 1.58
TSPAN3-208ENST00000560514 CYP27B1O15528 508 aa24.94■■□□□ 1.58
TSPAN3-208ENST00000560514 KIF3CO14782 793 aa24.93■■□□□ 1.58
TSPAN3-208ENST00000560514 AMIGO3Q86WK7 504 aa24.93■■□□□ 1.58
TSPAN3-208ENST00000560514 TOGARAM1Q9Y4F4 1720 aa24.92■■□□□ 1.58
TSPAN3-208ENST00000560514 APLP1P51693 650 aa24.92■■□□□ 1.58
TSPAN3-208ENST00000560514 PIGBQ92521 554 aa24.92■■□□□ 1.58
TSPAN3-208ENST00000560514 KIF24Q5T7B8 1368 aa24.92■■□□□ 1.58
TSPAN3-208ENST00000560514 LOC102724428A0A0B4J2F2 783 aa24.91■■□□□ 1.58
TSPAN3-208ENST00000560514 SIK1P57059 783 aa24.91■■□□□ 1.58
TSPAN3-208ENST00000560514 SMIM5Q71RC9 77 aa24.91■■□□□ 1.58
TSPAN3-208ENST00000560514 SPG7Q9UQ90 795 aa24.9■■□□□ 1.58
TSPAN3-208ENST00000560514 KIF20BQ96Q89 1820 aa24.89■■□□□ 1.58
TSPAN3-208ENST00000560514 GNPATO15228 680 aa24.89■■□□□ 1.58
TSPAN3-208ENST00000560514 TMOD3Q9NYL9 352 aa24.89■■□□□ 1.58
TSPAN3-208ENST00000560514 TMF1P82094 1093 aa24.88■■□□□ 1.57
TSPAN3-208ENST00000560514 LINC00116Q8NCU8 138 aa24.88■■□□□ 1.57
TSPAN3-208ENST00000560514 PKD1L3Q7Z443 1732 aa24.88■■□□□ 1.57
TSPAN3-208ENST00000560514 TOMM70O94826 608 aa24.86■■□□□ 1.57
TSPAN3-208ENST00000560514 ATP6V1AP38606 617 aa24.86■■□□□ 1.57
TSPAN3-208ENST00000560514 MMP10P09238 476 aa24.85■■□□□ 1.57
TSPAN3-208ENST00000560514 NKX1-1Q15270 411 aaPredicted RBP24.85■■□□□ 1.57
TSPAN3-208ENST00000560514 BCS1LQ9Y276 419 aa24.85■■□□□ 1.57
TSPAN3-208ENST00000560514 MAP2P11137 1827 aaKnown RBP24.84■■□□□ 1.57
TSPAN3-208ENST00000560514 CICQ96RK0 1608 aaPredicted RBP24.84■■□□□ 1.57
TSPAN3-208ENST00000560514 PPM1GO15355 546 aaPredicted RBP24.84■■□□□ 1.57
TSPAN3-208ENST00000560514 TGFB2P61812 414 aa24.83■■□□□ 1.57
TSPAN3-208ENST00000560514 ARHGAP27Q6ZUM4 889 aa24.82■■□□□ 1.56
TSPAN3-208ENST00000560514 CDCA8Q53HL2 280 aa24.81■■□□□ 1.56
TSPAN3-208ENST00000560514 ASAP1Q9ULH1 1129 aa24.81■■□□□ 1.56
TSPAN3-208ENST00000560514 EMILIN1Q9Y6C2 1016 aa24.81■■□□□ 1.56
TSPAN3-208ENST00000560514 N4BP2Q86UW6 1770 aaPredicted RBP24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 ITPK1Q13572 414 aa24.8■■□□□ 1.56
TSPAN3-208ENST00000560514 TRAPPC3LQ5T215 181 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms