RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 MARCH10Q8NA82 808 aaPredicted RBP17.5■□□□□ 0.39
NEDD8-208ENST00000560427 ZCRB1Q8TBF4 217 aaKnown RBP17.5■□□□□ 0.39
NEDD8-208ENST00000560427 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.5■□□□□ 0.396e-8■■□□□ 11.8
NEDD8-208ENST00000560427 PCDH11XQ9BZA7 1347 aa17.48■□□□□ 0.39
NEDD8-208ENST00000560427 PCDH11YQ9BZA8 1340 aa17.48■□□□□ 0.39
NEDD8-208ENST00000560427 SHANK3Q9BYB0 1731 aa17.48■□□□□ 0.39
NEDD8-208ENST00000560427 MYBBP1AQ9BQG0 1328 aaKnown RBP17.47■□□□□ 0.39
NEDD8-208ENST00000560427 SF3B2Q13435 895 aaKnown RBP17.47■□□□□ 0.39
NEDD8-208ENST00000560427 FAM182BQ5T319 152 aa17.47■□□□□ 0.39
NEDD8-208ENST00000560427 EP400Q96L91 3159 aa17.46■□□□□ 0.39
NEDD8-208ENST00000560427 SPG7Q9UQ90 795 aa17.46■□□□□ 0.39
NEDD8-208ENST00000560427 NUDCQ9Y266 331 aa17.46■□□□□ 0.39
NEDD8-208ENST00000560427 TNS1Q9HBL0 1735 aaKnown RBP17.45■□□□□ 0.38
NEDD8-208ENST00000560427 SULT6B1Q6IMI4 303 aa17.45■□□□□ 0.38
NEDD8-208ENST00000560427 PRKRIP1Q9H875 184 aaPredicted RBP17.45■□□□□ 0.38
NEDD8-208ENST00000560427 AMOTQ4VCS5 1084 aa17.44■□□□□ 0.38
NEDD8-208ENST00000560427 DDX54Q8TDD1 881 aaKnown RBP17.44■□□□□ 0.38
NEDD8-208ENST00000560427 NHSQ6T4R5 1651 aa17.43■□□□□ 0.38
NEDD8-208ENST00000560427 AEBP1Q8IUX7 1158 aa17.43■□□□□ 0.38
NEDD8-208ENST00000560427 TRIM37O94972 964 aa17.42■□□□□ 0.38
NEDD8-208ENST00000560427 BAG6P46379 1132 aa17.42■□□□□ 0.38
NEDD8-208ENST00000560427 PLEKHO1Q53GL0 409 aaPredicted RBP17.42■□□□□ 0.38
NEDD8-208ENST00000560427 BCL11BQ9C0K0 894 aaPredicted RBP17.42■□□□□ 0.38
NEDD8-208ENST00000560427 SBF2Q86WG5 1849 aa17.42■□□□□ 0.38
NEDD8-208ENST00000560427 U2SURPO15042 1029 aaKnown RBP17.41■□□□□ 0.38
NEDD8-208ENST00000560427 RGPD3A6NKT7 1758 aaPredicted RBP17.4■□□□□ 0.38
NEDD8-208ENST00000560427 RGPD4Q7Z3J3 1758 aa17.4■□□□□ 0.38
NEDD8-208ENST00000560427 IFNL2Q8IZJ0 200 aa17.4■□□□□ 0.38
NEDD8-208ENST00000560427 CYP27B1O15528 508 aa17.39■□□□□ 0.37
NEDD8-208ENST00000560427 NKX1-1Q15270 411 aaPredicted RBP17.39■□□□□ 0.37
NEDD8-208ENST00000560427 DOT1LQ8TEK3 1739 aa17.38■□□□□ 0.37
NEDD8-208ENST00000560427 HSP90AB1P08238 724 aaKnown RBP17.38■□□□□ 0.37
NEDD8-208ENST00000560427 HMOX1P09601 288 aa17.38■□□□□ 0.37
NEDD8-208ENST00000560427 PHKG2P15735 406 aa17.38■□□□□ 0.37
NEDD8-208ENST00000560427 U2AF1L5P0DN76 240 aaPredicted RBP17.37■□□□□ 0.37
NEDD8-208ENST00000560427 U2AF1Q01081 240 aaKnown RBP eCLIP17.37■□□□□ 0.37
NEDD8-208ENST00000560427 ANP32CO43423 234 aa17.36■□□□□ 0.37
NEDD8-208ENST00000560427 FCHSD2O94868 740 aa17.36■□□□□ 0.37
NEDD8-208ENST00000560427 APBA3O96018 575 aa17.36■□□□□ 0.37
NEDD8-208ENST00000560427 C1orf141Q5JVX7 400 aa17.35■□□□□ 0.37
NEDD8-208ENST00000560427 ZNF530Q6P9A1 599 aaPredicted RBP17.35■□□□□ 0.37
NEDD8-208ENST00000560427 RSPH6AQ9H0K4 717 aa17.35■□□□□ 0.37
NEDD8-208ENST00000560427 PLSCR1O15162 318 aa17.34■□□□□ 0.37
NEDD8-208ENST00000560427 DEFB132Q7Z7B7 95 aa17.34■□□□□ 0.37
NEDD8-208ENST00000560427 ACSBG1Q96GR2 724 aa17.34■□□□□ 0.37
NEDD8-208ENST00000560427 TOGARAM1Q9Y4F4 1720 aa17.33■□□□□ 0.37
NEDD8-208ENST00000560427 KCNQ2O43526 872 aa17.33■□□□□ 0.36
NEDD8-208ENST00000560427 PRKAR2BP31323 418 aa17.33■□□□□ 0.36
NEDD8-208ENST00000560427 AKAP4Q5JQC9 854 aa17.33■□□□□ 0.36
NEDD8-208ENST00000560427 GAS2L2Q8NHY3 880 aa17.33■□□□□ 0.36
NEDD8-208ENST00000560427 DCAF5Q96JK2 942 aa17.33■□□□□ 0.36
NEDD8-208ENST00000560427 PNNQ9H307 717 aaKnown RBP17.33■□□□□ 0.36
NEDD8-208ENST00000560427 PRIM1P49642 420 aaKnown RBP17.32■□□□□ 0.36
NEDD8-208ENST00000560427 CAMKK2Q96RR4 588 aa17.32■□□□□ 0.36
NEDD8-208ENST00000560427 BTAF1O14981 1849 aa17.32■□□□□ 0.36
NEDD8-208ENST00000560427 RREB1Q92766 1687 aa17.32■□□□□ 0.36
NEDD8-208ENST00000560427 NEFMP07197 916 aa17.31■□□□□ 0.36
NEDD8-208ENST00000560427 EN1Q05925 392 aaPredicted RBP17.31■□□□□ 0.36
NEDD8-208ENST00000560427 SYTL4Q96C24 671 aaPredicted RBP17.31■□□□□ 0.36
NEDD8-208ENST00000560427 KDM6AO15550 1401 aaPredicted RBP17.3■□□□□ 0.36
NEDD8-208ENST00000560427 ERVV-2B6SEH9 535 aa17.3■□□□□ 0.36
NEDD8-208ENST00000560427 MTHFSDQ2M296 383 aaKnown RBP17.3■□□□□ 0.36
NEDD8-208ENST00000560427 PTF1AQ7RTS3 328 aa17.3■□□□□ 0.36
NEDD8-208ENST00000560427 ADAMTS7Q9UKP4 1686 aa17.29■□□□□ 0.36
NEDD8-208ENST00000560427 MAP3K5Q99683 1374 aa17.28■□□□□ 0.36
NEDD8-208ENST00000560427 WDR43Q15061 677 aaKnown RBP eCLIP17.28■□□□□ 0.36
NEDD8-208ENST00000560427 EZH2Q15910 746 aaKnown RBP17.28■□□□□ 0.36
NEDD8-208ENST00000560427 MRC1P22897 1456 aa17.28■□□□□ 0.36
NEDD8-208ENST00000560427 TMOD3Q9NYL9 352 aa17.27■□□□□ 0.36
NEDD8-208ENST00000560427 ITGB4P16144 1822 aa17.26■□□□□ 0.35
NEDD8-208ENST00000560427 HMGB2P26583 209 aaKnown RBP17.26■□□□□ 0.35
NEDD8-208ENST00000560427 SLC27A3Q5K4L6 730 aa17.26■□□□□ 0.35
NEDD8-208ENST00000560427 MPRIPQ6WCQ1 1025 aa17.26■□□□□ 0.35
NEDD8-208ENST00000560427 SMARCC1Q92922 1105 aaPredicted RBP17.26■□□□□ 0.35
NEDD8-208ENST00000560427 PHACTR3Q96KR7 559 aa17.26■□□□□ 0.35
NEDD8-208ENST00000560427 PLEKHF1Q96S99 279 aa17.26■□□□□ 0.35
NEDD8-208ENST00000560427 SCN11AQ9UI33 1791 aa17.25■□□□□ 0.35
NEDD8-208ENST00000560427 MAPK8IP3Q9UPT6 1336 aa17.25■□□□□ 0.35
NEDD8-208ENST00000560427 NUP188Q5SRE5 1749 aa17.25■□□□□ 0.35
NEDD8-208ENST00000560427 GNAT3A8MTJ3 354 aa17.25■□□□□ 0.35
NEDD8-208ENST00000560427 PIGBQ92521 554 aa17.25■□□□□ 0.35
NEDD8-208ENST00000560427 LY75O60449 1722 aa17.24■□□□□ 0.35
NEDD8-208ENST00000560427 HTATSF1O43719 755 aaKnown RBP17.24■□□□□ 0.35
NEDD8-208ENST00000560427 TXNRD1Q16881 649 aa17.24■□□□□ 0.35
NEDD8-208ENST00000560427 PALLDQ8WX93 1383 aa17.24■□□□□ 0.35
NEDD8-208ENST00000560427 RNMTO43148 476 aaKnown RBP17.23■□□□□ 0.35
NEDD8-208ENST00000560427 CABP4P57796 275 aa17.23■□□□□ 0.35
NEDD8-208ENST00000560427 SLC52A2Q9HAB3 445 aa17.22■□□□□ 0.35
NEDD8-208ENST00000560427 CEMIPQ8WUJ3 1361 aa17.22■□□□□ 0.35
NEDD8-208ENST00000560427 KAT6BQ8WYB5 2073 aa17.22■□□□□ 0.35
NEDD8-208ENST00000560427 NBPF14Q5TI25 921 aa17.21■□□□□ 0.35
NEDD8-208ENST00000560427 PROM2Q8N271 834 aa17.21■□□□□ 0.35
NEDD8-208ENST00000560427 PAPPAQ13219 1627 aa17.21■□□□□ 0.35
NEDD8-208ENST00000560427 NFE2L2Q16236 605 aa17.2■□□□□ 0.34
NEDD8-208ENST00000560427 RTF1Q92541 710 aaKnown RBP17.2■□□□□ 0.34
NEDD8-208ENST00000560427 MRS2Q9HD23 443 aa17.2■□□□□ 0.34
NEDD8-208ENST00000560427 ADAMTS8Q9UP79 889 aa17.2■□□□□ 0.34
NEDD8-208ENST00000560427 RUNDC1Q96C34 613 aa17.19■□□□□ 0.34
NEDD8-208ENST00000560427 LGR6Q9HBX8 967 aa17.19■□□□□ 0.34
NEDD8-208ENST00000560427 ZNF831Q5JPB2 1677 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms